prot_A-nodosum_M_contig88.53.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig88.53.1
Unique Nameprot_A-nodosum_M_contig88.53.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length218
Homology
BLAST of mRNA_A-nodosum_M_contig88.53.1 vs. uniprot
Match: D8LNI7_ECTSI (SRP_SPB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNI7_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 1.140e-79
Identity = 124/189 (65.61%), Postives = 156/189 (82.54%), Query Frame = 0
Query:   29 ILLPTALAVRRRGVREFGVMESMQNKLINRNVGKQEKLFRDQMKDLSLLDKFDLDDYVKIIETPLEKFSAKMPWNKDKEELKNMKMQKNILDNLTPTQRKNPDLIRAGHRQAIADRIGCTVEDVNNMLAAFREIKAMHGWLSTRRKKRERIPRTQEEMNVMASDPSGTMLIKFMRMKKGGSGQRPSYGF 217
            +LLPT   V   GVR FGVM+S+Q+K+INRN  KQEK F++QM++LSL + F+LDD+ KIIE PL+KFSAK+PWNK +EEL+ MKMQK +L+ LTP QRKNP+ IR GHRQ IADR G T EDVN  LAA+RE+KAMHGWLSTRRK++ERIP TQEE++VMA+DPSGTML+ FM++K+  SG +PS+ F
Sbjct:   48 VLLPTGRGVEGAGVRGFGVMDSVQDKIINRNTAKQEKQFKEQMEELSLKESFNLDDFAKIIEEPLDKFSAKLPWNKSREELQAMKMQKKVLEGLTPLQRKNPESIRHGHRQRIADRAGVTTEDVNKALAAYRELKAMHGWLSTRRKRKERIPSTQEELHVMATDPSGTMLMNFMKVKRSNSG-KPSFAF 235          
BLAST of mRNA_A-nodosum_M_contig88.53.1 vs. uniprot
Match: A0A6A4EA06_9STRA (SRP_SPB domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EA06_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.140e-11
Identity = 50/166 (30.12%), Postives = 93/166 (56.02%), Query Frame = 0
Query:   47 VMESMQNKLINRNVGKQEKLFRDQMKDLSLLDKFDLDDYVKIIETPLEKFSAK-----MPWNKDKEELKNMKMQKNILDNLTPTQRKNPDLIRAGHRQAIADRIGCTVEDVNNMLAAFREIKAMHGWLSTRRKKRERIPRTQEEMN-VMASDPSGTMLIKFMRMKK 206
            + +++  KL  RN  KQ + ++ QM +LSL +KFDL+ +   ++   +   A      +P       ++ MK+   IL+++ P  R++P LI    ++ I+++ G + E++NNML  + ++ A+H WL  R ++  R+P T +E   ++  DP+G    KF RMK+
Sbjct:   53 IKKTVSGKLEERNQLKQGEAYKQQMIELSLKEKFDLNGFYDHLKKNADASGATGWRSMIPGVSTMTAVQQMKVFMTILESMEPEYRESPRLINGKAKRKISEKAGHSPEEINNMLRNYEQLSALHIWLKKRVERGLRVPETLDETTELVRQDPTGFPAKKF-RMKQ 217          
BLAST of mRNA_A-nodosum_M_contig88.53.1 vs. uniprot
Match: A0A225WNL9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WNL9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.840e-5
Identity = 50/177 (28.25%), Postives = 87/177 (49.15%), Query Frame = 0
Query:   43 REFGVMESMQN----KLINRNVGKQEKLFRDQMKDLSLLDKFDLDDYVKIIETPLEKFSAK--------MPWNKDKEELKNMKMQKNILDNLTPTQRKNPDLIRAGHRQAIADRIGCTVEDVNNMLAAFREIKAMHGWLSTRRKKRERIPRTQEEMN-VMASDPSGTMLIKFMRMKK 206
            R  GV+ +++N    KL  RN  KQE+ ++ QM DLS LDKFDL+ +   ++  ++   A         +P       ++ MK    ILD++     ++   +           +  + E++NNML  + ++ A+H WL  R ++   IP + +E   ++  DP+G    KF RMK+
Sbjct:   39 RSMGVLSNIKNTVSGKLEERNQHKQEEAYKQQMIDLSQLDKFDLNGFYDHLKVDIKNAEASGASGWRSMIPGVSSMTAVQQMKAFMGILDSMEIRDTEDGCFV-------FTTFVLQSPEEINNMLRNYEQLSALHIWLVKRVERGLSIPESMDETTELVRQDPTGFPAKKF-RMKQ 207          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig88.53.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNI7_ECTSI1.140e-7965.61SRP_SPB domain-containing protein n=2 Tax=Ectocarp... [more]
A0A6A4EA06_9STRA1.140e-1130.12SRP_SPB domain-containing protein n=3 Tax=Phytopht... [more]
A0A225WNL9_9STRA1.840e-528.25Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004125Signal recognition particle, SRP54 subunit, M-domainPFAMPF02978SRP_SPBcoord: 93..165
e-value: 3.3E-8
score: 34.1
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyGENE3D1.10.260.30coord: 65..190
e-value: 2.1E-13
score: 52.4
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilySUPERFAMILY47446Signal peptide-binding domaincoord: 70..169

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig88contigA-nodosum_M_contig88:490919..493673 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig88.53.1mRNA_A-nodosum_M_contig88.53.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig88 490041..497570 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig88.53.1 ID=prot_A-nodosum_M_contig88.53.1|Name=mRNA_A-nodosum_M_contig88.53.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=218bp
MAPACLGRGRRWVRGAREGEHPAREGGGILLPTALAVRRRGVREFGVMES
MQNKLINRNVGKQEKLFRDQMKDLSLLDKFDLDDYVKIIETPLEKFSAKM
PWNKDKEELKNMKMQKNILDNLTPTQRKNPDLIRAGHRQAIADRIGCTVE
DVNNMLAAFREIKAMHGWLSTRRKKRERIPRTQEEMNVMASDPSGTMLIK
FMRMKKGGSGQRPSYGF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004125Signal_recog_particle_SRP54_M
IPR036891Signal_recog_part_SRP54_M_sf