prot_A-nodosum_M_contig88.32.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig88.32.1
Unique Nameprot_A-nodosum_M_contig88.32.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length218
Homology
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BLAST of mRNA_A-nodosum_M_contig88.32.1 vs. uniprot
Match: A0A6H5KYY0_9PHAE (Response regulatory domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.940e-24
Identity = 67/135 (49.63%), Postives = 86/135 (63.70%), Query Frame = 0 
Query:    2 VAYSVEEGLDIAVSGDFDLVVVDLHMPTFSGIEFCRAVRGVDLESGGGAPIAGSTIAGAASVSAA--DRP----RLLLHTTAAGSVKSDELEAFLEEGLVDKYVPQPLDFRCLLDFLEILEQQEEDGGGSRGLGA 130
            VA+S EE +D+ + G + + VVDLHMP  SG EFCR VR  +LE    A +    I G A       + P    +LLLHTT+AGSVK D+LEAFLEE LVD+YVP PLD   L DFL++ E+ E+D  G+R + A
Sbjct:  852 VAHSAEEAMDMILEGYYQVAVVDLHMPRMSGTEFCRRVRAHELEVA--AAVRSVNINGRAGQEGEGLNEPQPSTKLLLHTTSAGSVKFDDLEAFLEEDLVDEYVPHPLDLGTLSDFLKLFEE-EDDQYGTRKMSA 983
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BLAST of mRNA_A-nodosum_M_contig88.32.1 vs. uniprot
Match: D7FY83_ECTSI (Response regulatory domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY83_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.740e-23
Identity = 64/135 (47.41%), Postives = 83/135 (61.48%), Query Frame = 0 
Query:    2 VAYSVEEGLDIAVSGDFDLVVVDLHMPTFSGIEFCRAVRGVDLESGGGAPIAGSTIAGAASVSAAD------RPRLLLHTTAAGSVKSDELEAFLEEGLVDKYVPQPLDFRCLLDFLEILEQQEEDGGGSRGLGA 130
            VA+S EE +D+ + G + + VVDLHMP  SG EFCR VR  +LE      I     +G A     +        +LLLHTT+AGSV  D+LEAFLEE LVD+YVP PLD   L DFL++ E+ E+D  G+R + A
Sbjct:  759 VAHSAEEAMDMILEGYYQVAVVDLHMPRMSGTEFCRRVRAHELEVA--TSIRSMNTSGRAGQEGEELNEPGPSTKLLLHTTSAGSVTFDDLEAFLEEDLVDEYVPHPLDLGTLFDFLKLFEE-EDDQYGTRKMSA 890
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BLAST of mRNA_A-nodosum_M_contig88.32.1 vs. uniprot
Match: A0A496QFI3_9BACT (DNA-binding response regulator n=2 Tax=Thermotogae TaxID=200918 RepID=A0A496QFI3_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 4.690e-6
Identity = 37/118 (31.36%), Postives = 62/118 (52.54%), Query Frame = 0 
Query:    3 AYSVEEGLDIAVSGDFDLVVVDLHMPTFSGIEFCRAVRGVDLESGGGAPIAGSTIAGAASVSAADRPRLLLHTTAAGSVKSDELEAFLEEGLVDKYVPQPLDFRCLLDFLEILEQQEE 120
            A++ E+GL++A   D+D+V++D+ +P FSG EFC A+R                          ++   +L  TA G ++S +L+ F      D Y+P+P DFR LL  +E L ++E+
Sbjct:   30 AFTGEDGLELAQVMDYDVVILDILLPDFSGFEFCAALR-------------------------KEKATPILMLTALGDIES-KLKGFSVGA--DDYLPKPFDFRELLVRVEALIRREQ 119
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BLAST of mRNA_A-nodosum_M_contig88.32.1 vs. uniprot
Match: A0A6B0GV07_9BACL (Response regulator n=2 Tax=Saccharibacillus TaxID=456492 RepID=A0A6B0GV07_9BACL)

HSP 1 Score: 53.5 bits (127), Expect = 4.080e-5
Identity = 39/131 (29.77%), Postives = 64/131 (48.85%), Query Frame = 0 
Query:    4 YSVEEGLDIAVSGDFDLVVVDLHMPTFSGIEFCRAVRGVDLESGGGAPIAGSTIAGAASVSAADRPRLLLHTTAAGSVKSDELEAFLEEGLVDKYVPQPLDFRCLLDFLEILEQQEEDGGGSRGLGAPFND 134
            Y   EGL+ A++G++DLV++DL +P  SGIE CR ++                       +A D P +++  TA G V  D +   L+ G  D Y+P+P     LL  + ++ +++E  G S  +   F D
Sbjct:   31 YEGREGLETALNGEWDLVLLDLMLPGLSGIEVCRRLK-----------------------AAKDTPVIMI--TARGGVM-DRVTG-LDTG-ADDYMPKPFAIEELLARIRVIRRRQEKAGASAPMTLTFKD 133
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig88.32.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KYY0_9PHAE3.940e-2449.63Response regulatory domain-containing protein n=1 ... [more]
D7FY83_ECTSI1.740e-2347.41Response regulatory domain-containing protein n=1 ... [more]
A0A496QFI3_9BACT4.690e-631.36DNA-binding response regulator n=2 Tax=Thermotogae... [more]
A0A6B0GV07_9BACL4.080e-529.77Response regulator n=2 Tax=Saccharibacillus TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.2300coord: 1..172
e-value: 5.5E-11
score: 44.8
IPR001789Signal transduction response regulator, receiver domainPROSITEPS50110RESPONSE_REGULATORYcoord: 1..116
score: 15.24124
IPR011006CheY-like superfamilySUPERFAMILY52172CheY-likecoord: 2..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig88contigA-nodosum_M_contig88:266966..274890 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig88.32.1mRNA_A-nodosum_M_contig88.32.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig88 266886..275240 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig88.32.1 ID=prot_A-nodosum_M_contig88.32.1|Name=mRNA_A-nodosum_M_contig88.32.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=218bp
MVAYSVEEGLDIAVSGDFDLVVVDLHMPTFSGIEFCRAVRGVDLESGGGA
PIAGSTIAGAASVSAADRPRLLLHTTAAGSVKSDELEAFLEEGLVDKYVP
QPLDFRCLLDFLEILEQQEEDGGGSRGLGAPFNDSKREAAAAAATTTRVT
RAAAAARRWGTRAPRRYCCNLEPWQPSISDPASTFFDIESLEPSARAARQ
PTEVYCNRNRPEARDGV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001789Sig_transdc_resp-reg_receiver
IPR011006CheY-like_superfamily