prot_A-nodosum_M_contig877.2.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig877.2.1
Unique Nameprot_A-nodosum_M_contig877.2.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length109
Homology
BLAST of mRNA_A-nodosum_M_contig877.2.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.610e-14
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 0
Query:    4 WHRQLWHLHSKILD-VVKLDNNERSFEDTVSDCNVCGVGKSRQLAHPKIAHHK-VNHPFQLLFVDLMGSITPEALGGYKYVSKVSDKFPKRTEIHLLKPKADALSS 107
            WH++L H + ++L+ + ++D +     D+ S C  C + KS Q  HPKIA+   +    QL+  DL+G I+P A+GGY Y++K +D   +   ++ +  K DALSS
Sbjct:  240 WHQRLGHPNVQVLEQLARIDGSGVHLRDSFSACGTCKINKSSQQNHPKIANMDGITERLQLVSTDLLGPISPSAIGGYNYMAKFTDHATRLKAVYFIAKKGDALSS 345          
BLAST of mRNA_A-nodosum_M_contig877.2.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.590e-9
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 0
Query:    7 QLWHLHSKILDVV-KLDNNERSFEDTVSDCNVCGVGKSRQLAHPKIAHHKVNHPFQLLFVDLMGSITPEALGGYKYVSKV 85
            +L +++S+ L ++ K+DNN   +  T+  C    VGKS Q  H K A + V+  FQL+  DLMG I+P ALGG++YVSK+
Sbjct:  251 RLGYINSRSLGMLRKIDNNGVDYTGTMEACGN-DVGKSSQRPHLKKATYDVSRSFQLISTDLMGPISPPALGGFRYVSKL 329          
BLAST of mRNA_A-nodosum_M_contig877.2.1 vs. uniprot
Match: UPI0002C2FD19 (uncharacterized protein LOC101310001 n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C2FD19)

HSP 1 Score: 58.9 bits (141), Expect = 7.990e-8
Identity = 33/112 (29.46%), Postives = 58/112 (51.79%), Query Frame = 0
Query:    3 LWHRQLWHLHSKILDVVKLDNNE------RSFEDTVSDCNVCGVGKSRQLAHPKIAHHKVNHPFQLLFVDLMGSITPEALGGYKYVSKVSDKFPKRTEIHLLKPKADALSSF 108
            LWHR++ HL+ +  D+VKL          +    ++  C  C +GK  + +HP ++    +   QL+++DL+G I  E++GG KYV  + D F + T +  L  K +    +
Sbjct:  741 LWHRRMCHLNHQ--DIVKLSAKSGVRGLPKLTGKSIGMCWDCKMGKLTRTSHPSLSAKPTSKVLQLVYLDLVGPIDTESVGGRKYVLVIVDDFSRFTWVKFLTSKDENFEKY 850          
BLAST of mRNA_A-nodosum_M_contig877.2.1 vs. uniprot
Match: A0A2Z7BSS5_9LAMI (Integrase catalytic domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BSS5_9LAMI)

HSP 1 Score: 58.2 bits (139), Expect = 1.430e-7
Identity = 33/110 (30.00%), Postives = 59/110 (53.64%), Query Frame = 0
Query:    3 LWHRQLWHLH----SKILDVVKLDNNERSFEDTVSDCNVCGVGKSRQLAHPKIAHHKVNHPFQLLFVDLMGSITPEALGGYKYVSKVSDKFPKRTEIHLLKPKADALSSF 108
            LWH ++ H      S + D++  D+N       V  C+VC + K ++L   K  +  V+HPF+LL +D+ G  +  ++ GY++   + D   + T ++LL+ K+D  S F
Sbjct:  450 LWHLRMGHPSPSKLSSLKDILHFDSNNVD----VHPCHVCHLSKQKRLPF-KSNNKMVDHPFELLHIDVWGPFSQYSVDGYRFFLTIVDDHTRFTWVYLLRSKSDVSSIF 554          
BLAST of mRNA_A-nodosum_M_contig877.2.1 vs. uniprot
Match: A0A438I5H1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438I5H1_VITVI)

HSP 1 Score: 53.9 bits (128), Expect = 4.470e-6
Identity = 36/112 (32.14%), Postives = 56/112 (50.00%), Query Frame = 0
Query:    3 LWHRQLWHLHSKILDVVKLDN--NERSFEDTVSDCNVCGVGKSRQLAHPKIAHHKVNH---PFQLLFVDLMGSITPEALGGYKYVSKVSDKFPKRTEIHLLKPKADALSSFQ 109
            LWH++L H+  + L+ +  D+  +   F D    C VC  GK       K    K++       L+  D+ GS+TP ALGGYKY     D F +   + L+  K+D+L+ F+
Sbjct:  343 LWHKRLGHISRQRLERLVKDSVLSNLDFSD-FETCVVCLKGKMTA----KTRKEKIDRCASTLDLIHTDICGSLTPTALGGYKYFITFIDDFSRFGYVELIHEKSDSLNVFK 449          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig877.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KAG6_9PHAE2.610e-1435.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWF9_9PHAE4.590e-943.75Integrase catalytic domain-containing protein n=1 ... [more]
UPI0002C2FD197.990e-829.46uncharacterized protein LOC101310001 n=1 Tax=Fraga... [more]
A0A2Z7BSS5_9LAMI1.430e-730.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A438I5H1_VITVI4.470e-632.14Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig877contigA-nodosum_M_contig877:129274..129600 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig877.2.1mRNA_A-nodosum_M_contig877.2.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig877 129274..129600 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig877.2.1 ID=prot_A-nodosum_M_contig877.2.1|Name=mRNA_A-nodosum_M_contig877.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=109bp
VTLWHRQLWHLHSKILDVVKLDNNERSFEDTVSDCNVCGVGKSRQLAHPK
IAHHKVNHPFQLLFVDLMGSITPEALGGYKYVSKVSDKFPKRTEIHLLKP
KADALSSFQ
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