prot_A-nodosum_M_contig875.9.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig875.9.1
Unique Nameprot_A-nodosum_M_contig875.9.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length703
Homology
BLAST of mRNA_A-nodosum_M_contig875.9.1 vs. uniprot
Match: D8LDD0_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDD0_ECTSI)

HSP 1 Score: 440 bits (1132), Expect = 5.570e-141
Identity = 314/750 (41.87%), Postives = 402/750 (53.60%), Query Frame = 0
Query:    2 QAIGIHRDDNIVAVNGIPLSSVSLSDWIEASTSKYAEAAATAASAPPHLPPHARSRTATFPVLGVPK-----TLRRPVSFSVSSSQP-------ENCQSAEPAE--CAALS----KPTEDETHAVEGEDL----GLTLTGFLRVEVVSLAEAEITIRPGKARRIELVQQREEAAEAERKEKGRLVAEEKLSLEETIEVKGEDKERSGEETMSKAMDAEQKIAVDKQLETKILEREEEATVKAVKKSRVDIAKLRTE------GKSFIFTAEYKIVAPMGLTFDLANPRAIVSEVVVDGSSEAAGVRVGDHLVRVNDRDTSEMKPTMAIKFLQRAEWPRVLTLLTPEKKKESGGDQPLLFDLVVTEPTIARGAYLIQAPGEWGYL--GEKQRLELGTGSCEFSPMVLADPASACQQDLRL-SVEKEGGGGDPLAIVLVKRGLCTFVEKAKNVQFAIQRSSERWAIVQAKSSSRDPTMVRGDEIAITTHAAAAPIVPENTSNNGTGGNRGG--------------MVLLNGEDALADMPAGNLLTDDIRIPVAMVSQRNGSSLETLLSWGVDTRATIAPVGACPFQAIFGGS----GRARKQEDNGGLFLVHSKGAGGAEFDYRQAQYGPGIIEVAGTAPYGMTVADPLDGCDDKPYKVRITGMLVAVKRGGCSFNMKTLVAQRLRAKGVIIINTAETTLRVMADPGEVEKALLPTVMVSAKAGRFL-ILAAGDDHSPMLGRFVRKSYDAER 701
            +A G+   D +V VN IPLSS+SL++WIE S +        A+ +       + +R A FP++ V       + + P S   +SS         + C +A+  +  C AL+    +PT     A     +    G  L GFL+VE+V L  AE+T RPG+AR  EL++QR +AA AERKEK R +AE K  LE                                                                     GK F FTAEYK VAPMGLTFDLAN  A+VSEV   G S+ AGV++GDHLVRVN+RDTSEMKPT A+K                                        RG YL+QAP +WG L    ++ +   + SCE   M L+DP  ACQ++LRL S   + G G    I LVKRG+CTFVEKAKNVQ A+       A+    +  +D T + G+++  +T A                                   MVLLNG+DALADMPAGNLLTDD+ IPVAM+S+ NGSS+E LLSWGV+ RA I+P GACP  +    +     +ARK +D+GG FLV SK  GG EF+YR A+YGPG+ + A  +P  + VADP+DGC+DK YKVR++GM   V+RGGCSF+MKTL AQR  A GVII NTAETTLRVMAD G+ EKAL+PTVMVSA AG FL   AAG   SP+LGRF R++++A R
Sbjct:   71 EATGVVSGDLLVKVNDIPLSSISLNEWIEQSMATILATHQPASDS-------STARLAIFPLVDVTSDGGGTSTKHPQSHPSNSSASSDDGFGNQRCAAAQLNDPMCIALASGEGRPTAGADAASPPGTMENTAGFRLKGFLKVELVGLDGAEVTFRPGEARIAELIKQRNDAAAAERKEKERALAEAKALLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKEFTFTAEYKEVAPMGLTFDLANLLAVVSEVTAGGLSDIAGVKIGDHLVRVNERDTSEMKPTAALKV---------------------------------------RGEYLMQAPKDWGGLRGASEEDVAQPSWSCEPRSMALSDPPPACQRNLRLLSGGVQVGDGREPVIALVKRGVCTFVEKAKNVQVAVLN-----AVADTAAPPQDTTALAGEDVITSTKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVLLNGDDALADMPAGNLLTDDVNIPVAMISRGNGSSVEALLSWGVEVRAAISPYGACPLPSPTPSADEQGAKARKDDDDGGRFLVLSKAQGGREFNYRLARYGPGVGD-AEASPVAIAVADPIDGCEDKAYKVRVSGMFAVVERGGCSFSMKTLAAQRAGALGVIIANTAETTLRVMADQGDGEKALIPTVMVSATAGGFLSAAAAGSSRSPILGRFTREAFEARR 768          
BLAST of mRNA_A-nodosum_M_contig875.9.1 vs. uniprot
Match: A0A835ZE01_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE01_9STRA)

HSP 1 Score: 201 bits (512), Expect = 7.120e-52
Identity = 147/444 (33.11%), Postives = 206/444 (46.40%), Query Frame = 0
Query:  233 RTEGKSFIFTAEYKIVAPMGLTFDLANPRAIVSEVVVDGSSEAAGVRVGDHLVRVNDRDTSEMKPTMAIKFLQRAEWPRVLTLLTPEKKKESGGDQPLLFDLVVTEPTIARGAYLIQAPGEWGY----------LGEKQRLELGTGSCEFSPMVLADPASAC---QQDLRLS-----VEKEGGGGDPLAIVLVKRGLCTFVEKAKNVQFAIQRSSERWAIVQAKSSSRDPTMVRGDEIAITTHAAAAPIVPENTSNNGTGGNRGGMVLLNGEDALADMPAGNLLTDDIRIPVAMVSQRNGSSLETLLSWGVDTRATIAPVGAC-------PFQAIFGGSGRARKQEDNGG-LFLVHSKGAGGAEFDYRQAQYGPGIIEVAGTAPYG----MTVADPLDGCDDKPYKVRITGMLVAVKRGGCSFNMKTLVAQRLRAKGVIIINTA 646
            R  G+ F++T E+K   PMG+TFDLAN  A++ +V    ++   G+R GD LV VN  DTS M P  A + + RAEWPR L+L  PE +K +    P   +LV+ +P + RG Y ++AP +WG                        C    +++ DP S C   QQ + L+      + +  GG   A+V+V+RG C FV+KA NVQ  +  +                                                R  +V+ N ++ L DMPAGNL T  I IPVAM+ + +   LE +L  G+     +A  G C       P +   G   R R   D GG L +V ++GA   EFD+  A YGP        AP G    + VA P D CD +   VR+ G  V  +RG CSF+MKTL  Q+  A G+I+ N A
Sbjct:  252 RARGEGFVYTVEFKEAGPMGITFDLANTTAVIGDVARGSAAATLGIRAGDQLVEVNGVDTSGMGPERAGREVMRAEWPRRLSLTVPEVEKPAS---PRDMELVILQPLLVRGVYALRAPNDWGADLPLAAVDNDXXXXXXXXXXXAVCSGVSVLVTDPDSGCATVQQAVSLAGGNFTAQADLSGG---AVVIVRRGSCPFVDKASNVQTLLGGAXXXXXXA-----------------------------------------RSAVVVANTDNELVDMPAGNLPTAGITIPVAMMRKEDSFGLEQVLGVGMPCTGLLAAPGRCAAPSLPRPERGADGKPVRNRPATDVGGRLAVVSARGA--REFDWHLALYGP-------HAPNGTVVNVVVASPSDACDAEALMVRVRGSFVIAERGVCSFSMKTLALQKAGALGMILTNNA 639          
BLAST of mRNA_A-nodosum_M_contig875.9.1 vs. uniprot
Match: A0A8J2SDR5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDR5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.100e-14
Identity = 114/483 (23.60%), Postives = 171/483 (35.40%), Query Frame = 0
Query:  250 PMGLTFDLANP--RAIVSEVVVDGSSEAAGVRVGDHLVRVN--DRD-----------TSEMKPTMA----IKFLQRAEWPRVLTLLTPEKKKESGGDQPLLFDLVVTEPTIARGAYLIQAPGEWGYLGEKQRLELGTGSCEFSPMVLADPASACQQDLRLSVEKEGGG---------GDPLAIVLVKRGLCTFVEKAKNVQFAIQRSSERWAIVQAKSSSRDPTMVRGDEIAITTHAAAAPIVPENTSNNGTGGNRGGMVLLNGEDALADMPAGNLLTDDIRIPVAMVSQRNGSSLETLLSWGVDTRATIAPVGACPFQAIFGGSGRARKQED----NGGLFLVHSKGAGGAEFDYRQAQYGPGIIEVAGTAPYGMTVADPLDGCDDKPYKVRITGMLVAVKRGG-CSFNMKTLVAQRLRAKGVIIINTAETTLRVMADPGEVEKALLPTVMVSAKAGRFLILAAGDDHSPMLGRFVRKSYDA 699
            P+G+TF         +V+ V     +  AGV  GD +V +    RD           T+ ++P       ++ +++  WP    +    +      + PL     V  P + RG         W     ++ ++L          VLADP   C   L         G          D     L KRG C+FV+KA+ +Q  +                                                     G+++ N E     MPAG + TDDI + VAMV    G  LE  L W       +A     P         R    ED    NG +     +     E  +R A +GP    +A  AP G+  A P   C     + R+ G+    +RGG C F  K  VA++L+A  ++++N+ E +L  M  P    +A +  +MV A AG  L   A        G   R +YDA
Sbjct:  314 PLGMTFGAGKSVDATLVTHVDAGKRAARAGVLRGDEVVELRWLQRDDDGAQKEVVVNTTVVRPERVTAHVMEAIKKRWWPLTFVVFRAHEVGSVEAEAPLFVS--VAAPVVLRGDQGAVTVAPWAATPVREDVDL----------VLADPLDGCAGSLLAEPAPVEDGRVKLGAPPPSDRKRFALAKRGGCSFVDKARALQAHVD----------------------------------------------------GVLIYNTEADPVKMPAGGVPTDDISVVVAMVGADQGQRLERALRWPDRDAVALALATTMPSSDAPHHPDRDFDDEDAPPVNGNVTFQCGRDV--VEARFRSAAFGP---LLAPHAPLGVGFAVPPPLCALSGVERRLAGLAAVAQRGGGCGFQEKARVAEKLQAAALVVVNS-EDSLTTMTLPEPDARASVAALMVGASAGAALEAMAAGACGRAAGVLARLAYDA 726          
BLAST of mRNA_A-nodosum_M_contig875.9.1 vs. uniprot
Match: A0A7S2RW17_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RW17_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.940e-9
Identity = 106/451 (23.50%), Postives = 171/451 (37.92%), Query Frame = 0
Query:  278 VRVGDHLVRVNDRDTSEMKPTMAIKFLQRAEWPRVLTLLTPEKKKESGGDQPLLFDLVVTEPTIARGAYLIQAPGEWGYLGEKQRLELGTGSCEFSPMVLAD------------PASACQQDLRLSVEKEG---------GGGDPL---AIVLVKRGLCTFVEKAKNVQFAIQRSSERWAIVQAKSSSRDPTMVRGDEIAITTHAAAAPIVPENTSNNGTGGNRGGMVLLNGEDALADMPAGNLLTD---DIRIPVAMVSQRNGSSLETLLSWG-----------------VDTRATIAPVGACPFQAIFGGSGRARKQEDNGGLFLVHSKGAGGAEFDYRQAQYGP---GIIEVAGTAPYGMTVA-DPLDGCDDKPYKVRITGMLVAVKRGGCSFNMKTLVAQRLRAKGVIIINTAETT---LRVMADPGEVEKALLPTVMVSAKAGRFL 677
            V +GD LV +N +  + M    +++ ++    P +L   T   +++  GD   L DL            L   P E  +LG + +L +       SP +LA             P +   Q+L LS  ++G         G  + L   ++VLV RG+C+FV K +NVQ                                                  + G +G +V+    + +A MPAG    +    I IP  M+S ++G +L+ LLS G                 +D  A  + +     +   G     +K      L +  S     A+F    A +GP   G   V    P  + ++ +P +GC+D        G +V V RG CSF+ K +  Q+    G+II+N+       L V   P E     +PT MV++ +G  L
Sbjct:    9 VSLGDRLVGINKKRFTGMTLEASVELIRNTPPPFILKFYT---ERDVDGDDISLDDLK-----------LATKPQEISHLGTEGQLIIA------SPPILAGSEFTITFASFGAPPACLLQNLTLSNPEQGKPLMACSASGLSNDLPENSLVLVLRGVCSFVTKTRNVQ--------------------------------------------------SKGGKGAIVVTRDFEPIAVMPAGAGELERGTSIDIPAGMLSWKDGLALQALLSNGPLKVLLKGANCQDLGSTLDQGAQQSEIDYSKMKTKDGRLIDRQKARSTVELLVWSSSNGMTAKFYGVFALFGPKYEGFPSVVDAKPGSLRLSPEPHNGCEDFAASSEFQGQIVVVYRGICSFSSKAINVQKAGGVGMIIVNSEPNLSDLLEVAGPPDEASLVKIPTAMVNSTSGEQL 389          
BLAST of mRNA_A-nodosum_M_contig875.9.1 vs. uniprot
Match: A0A7S2CH50_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CH50_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.690e-7
Identity = 84/322 (26.09%), Postives = 130/322 (40.37%), Query Frame = 0
Query:  374 PMVLADPASACQQDLRLSVEKEGGGGDPLAIVLVKRGLCTFVEKAKNVQFAIQRSSERWAIVQAKSSSRDPTMVRGDEIAITTHAAAAPIVPENTSNNGTGGNRGGMVLLNGEDALADMPAGNLLTDDIRIPVAMVSQRNGSSLETLLSWGVDTRATIAPVGACPFQA-------IFGGSGRARKQEDNGGLFLVHSKGA-GGAEFDYRQAQYGPGIIEVAGTAPYGMTVADPLDGCDDKPYKV----RITGMLVAVKRGGCSFNMKTLVAQRLRAKGVIIINTAETTLRVMADPG-EVEKALLPTVMVSAKAGRFLILAAG 682
            PM+LADP  AC   L  + E +       AIV+ KRG CTF  K KNV                                + +  AA  IV           N  G +   G DA            D+++ V+MV++  G+ L + +  G+   A + P+  C  Q+       +  GS  A +   N  +     KG  G A+ +Y QA +G    ++     Y +  A P + C++    +    ++ G  V ++RGGC F  K + A    A  VII+N+  +  R   +P  +  K  +P +MV+ K G  L L  G
Sbjct:  156 PMILADPPDACAAVLNNAEEIKKYD----AIVVAKRGTCTFGTKGKNV--------------------------------LASGGAALVIV----------NNEPGNMHAPGPDA-----------HDLKLSVSMVAEDEGNLLISSMEKGMALMAAMVPI-HCAAQSETVQTMDLCRGSTEADRAIANSIIEGGWVKGLPGDAKHEYLQATFG---TKIPTAKKYEIVHASPPNACNEGSELLDNAEQVAGKAVVIERGGCQFLEKAMKAWSSNASMVIIVNSETSINRYGCEPRWKGLKVDIPALMVTDKGGEALKLMKG 416          
BLAST of mRNA_A-nodosum_M_contig875.9.1 vs. uniprot
Match: A0A3F2RSJ3_9STRA (RING-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RSJ3_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.270e-5
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 0
Query:  591 YGMTVADPLDGCDDKPYKVRITGMLVAVKRGGCSFNMKTLVAQRLRAKGVIIINTAETTLRVMADP-GEVEKALLPTVMVSAKAGR 675
            + + VADP DG         ++G +V + RGGC+F  K L AQ   A GVIII T +     M D  GE +   +P  M+S+K G+
Sbjct:  150 HNVIVADPFDGAKPFQNASEMSGKIVVMTRGGCTFARKVLRAQAAGAAGVIIIQTVDVWPYTMTDSTGESKDVTIPAFMMSSKHGK 235          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig875.9.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LDD0_ECTSI5.570e-14141.87PA domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A835ZE01_9STRA7.120e-5233.11PDZ domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A8J2SDR5_9STRA3.100e-1423.60Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2RW17_9STRA5.940e-923.50Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S2CH50_9STRA2.690e-726.09Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A3F2RSJ3_9STRA3.270e-538.37RING-type domain-containing protein n=3 Tax=Phytop... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 249..319
e-value: 5.9E-5
score: 32.5
IPR001478PDZ domainPFAMPF00595PDZcoord: 259..308
e-value: 3.4E-6
score: 27.3
IPR001478PDZ domainPROSITEPS50106PDZcoord: 226..319
score: 9.3705
IPR036034PDZ superfamilyGENE3D2.30.42.10coord: 204..327
e-value: 8.7E-7
score: 30.8
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 250..318
NoneNo IPR availableGENE3D3.50.30.30coord: 557..688
e-value: 1.3E-14
score: 56.5
coord: 334..426
e-value: 4.0E-5
score: 25.6
NoneNo IPR availableCDDcd00136PDZcoord: 250..315
e-value: 1.55947E-6
score: 44.2185
NoneNo IPR availableSUPERFAMILY52025PA domaincoord: 608..683

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig875contigA-nodosum_M_contig875:117972..131369 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig875.9.1mRNA_A-nodosum_M_contig875.9.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig875 117063..131970 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig875.9.1 ID=prot_A-nodosum_M_contig875.9.1|Name=mRNA_A-nodosum_M_contig875.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=703bp
MQAIGIHRDDNIVAVNGIPLSSVSLSDWIEASTSKYAEAAATAASAPPHL
PPHARSRTATFPVLGVPKTLRRPVSFSVSSSQPENCQSAEPAECAALSKP
TEDETHAVEGEDLGLTLTGFLRVEVVSLAEAEITIRPGKARRIELVQQRE
EAAEAERKEKGRLVAEEKLSLEETIEVKGEDKERSGEETMSKAMDAEQKI
AVDKQLETKILEREEEATVKAVKKSRVDIAKLRTEGKSFIFTAEYKIVAP
MGLTFDLANPRAIVSEVVVDGSSEAAGVRVGDHLVRVNDRDTSEMKPTMA
IKFLQRAEWPRVLTLLTPEKKKESGGDQPLLFDLVVTEPTIARGAYLIQA
PGEWGYLGEKQRLELGTGSCEFSPMVLADPASACQQDLRLSVEKEGGGGD
PLAIVLVKRGLCTFVEKAKNVQFAIQRSSERWAIVQAKSSSRDPTMVRGD
EIAITTHAAAAPIVPENTSNNGTGGNRGGMVLLNGEDALADMPAGNLLTD
DIRIPVAMVSQRNGSSLETLLSWGVDTRATIAPVGACPFQAIFGGSGRAR
KQEDNGGLFLVHSKGAGGAEFDYRQAQYGPGIIEVAGTAPYGMTVADPLD
GCDDKPYKVRITGMLVAVKRGGCSFNMKTLVAQRLRAKGVIIINTAETTL
RVMADPGEVEKALLPTVMVSAKAGRFLILAAGDDHSPMLGRFVRKSYDAE
RG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf