prot_A-nodosum_M_contig874.3.7 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig874.3.7
Unique Nameprot_A-nodosum_M_contig874.3.7
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length1212
Homology
BLAST of mRNA_A-nodosum_M_contig874.3.7 vs. uniprot
Match: D8LGZ7_ECTSI (DNA-directed RNA polymerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ7_ECTSI)

HSP 1 Score: 1464 bits (3790), Expect = 0.000e+0
Identity = 796/1208 (65.89%), Postives = 865/1208 (71.61%), Query Frame = 0
Query:    1 MSSDVSSKVSKAGIVDGALRQQRVTKGSSRQPVTGPSFTLNSIPSKATAEKRRSLVAPHVDSYNFFLGEGLAEAVKDMPPLVMEVGEGGPVLKIWVEGMAVGYPGKKNEESASSKLHPRECRERGLTYQGVLHVDLCYQVGSGPIVRTQRRAGDCPVMVGSGRCHLQGLGSAQLCRKREEAGEMGGFFIVRGIERVIRLLQVPKRNYPHAISRATFKNRGQGYSTKGIIMRCARKDQTTVTVTLHYISTGGSTLRFSVLKQEFLVPVVIILKALRDTTDREIHERLLQGDRENTFLAAHVEVLLRESKRWGLHSRMESLAFLGSTFRTLMSATSKTTDVELGKKVIDRFVLVHLTRHADKQECLLLMLRKLYALVQGRCQEDNQDALANHELLLPGHLFGMILKERVENWLEKVRQFIGRDARANASKTVMQVHDGKYVGKLLDRFGSVVGQGMSTFLSTGNITSVTGLDLMQVSGFTIVAERINFLRYLSHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGAPCGLLNHLATTCR-------------SPSSIESLLVRLGVAPAGTGAGDGSTSLPHNFLPVMLDGRVVGGGREATLARAAAELRRLKVAGGAGGLAGVW------VDPTLEVGLVPVMAGGAGPYPGLFLNTGGARMCRPVLHLATGKAEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHSLTPHRIDNKMYKVLFPQAAIVQTRRHAEYQMDDYPQGTNAVVAVISYTGYDMEDAMILNKSSFERGFGHGSVLKTSVVDLKDVAGKLASPGEVARLRFCNTAPESTGAVRGRRRDDKLHESLGWDGLPVVGSWVESGDPLYCVVDQLTGKVTVGKHKESEKACVETVRALGREGIDKTPLSRVSITLRFQRNPVVGDKFSSRHGQKGVMSILWPTEDMPFTEAGMSPDVIINPHAFPSRMTIGMLIESMAGKSGALHGTFQDATPFAFHEKDRVIDHFGEQLRAAGFAYYGSEPLYSGVNGTVMHGDIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCASCGSLLSTSARRGTVATAGFSAAAAAVAAREGEGFDVSSGGGGIRCITCSVDPARAGGSSGGERVVAVAMP 1189
            M SD     SK+    G  ++Q         P TGPSFTL SIP K TA+KRR                               +GEGGP+LK+WVEG+ VGYPGKKNEE+ ++KL PRECRERGLTY G L VDLCYQVG G +VRTQ+RAGDCPVMVGS RCHL+G G A+L R REEAGEMGG+FIVRGIERVIRLLQVPKRNY HAISR TFK+RGQGYS KG++MRCARKDQ+T+TVTLHYISTGG+TLRFSV KQEFLVPVVIILKALRDT+DREIHER+LQG ++NTFLAAHVEVLLR+ KRWGLHSRMESLAFLGSTFRT++ A +  TD+ELGKKVIDR           +       LR L+                                      L  VRQ IGRDAR + +K VMQV D K++ K LDRFGS VGQGMSTFLSTGN+ S +GLDLMQVSGFTIVAERINFLRYL+HFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDG+PCGLLNHLAT C+             SP S+ESLLVRLGVAPAGTGAGDG+ SLP +FLPV++DGRVVGGG EATL RA                          VDPTLEVG VP M GGAGPYPGLFLN+ GARMCRPVLHL +G+ EWIGPM QQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAH LTPHR DNKMYKVLFPQAAIVQTRRH EYQ+DDYPQGTNAVVAVISYTG+DMEDAMILNKSSFERGFGH SVLKT  VDL+DVAGK A P  VARL+FCN  P S GA  G     KLHE LGWDGLP+VGSWV+ GD LYCVVD+LTGKVTVGK                                                                                     TIGMLIESMAGKSGA+HGT+QDATPFAFHE+DRVIDHFGEQLR+AG+AY+GSEPLYSGV GTVMH DIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVC++CGSLLSTSARRG VATAG S                      IRCITC   PA +GG  GG +V+AVA+P
Sbjct:    1 MLSDKGKAASKSRSTGGTAQRQ----AGKSHPTTGPSFTLKSIPGKTTADKRR-------------------------------LGEGGPLLKLWVEGVTVGYPGKKNEEATNAKLTPRECRERGLTYHGALLVDLCYQVGDGDVVRTQKRAGDCPVMVGSRRCHLRGHGPARLTRGREEAGEMGGYFIVRGIERVIRLLQVPKRNYAHAISRGTFKDRGQGYSEKGVMMRCARKDQSTLTVTLHYISTGGATLRFSVRKQEFLVPVVIILKALRDTSDREIHERVLQGQKDNTFLAAHVEVLLRDGKRWGLHSRMESLAFLGSTFRTVLQAPATATDIELGKKVIDRVETGWCWPWRCRWNWPRCCLRALFVS------------------------------------LPAVRQLIGRDARMDQAKAVMQVRDAKHMAKYLDRFGSAVGQGMSTFLSTGNVISTSGLDLMQVSGFTIVAERINFLRYLAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHLATACKVVCGGGKAPPPAESPLSLESLLVRLGVAPAGTGAGDGALSLPSSFLPVLVDGRVVGGGSEATLKRAXXXXXXXXXXXXXXXXXXXXXXXXXXVDPTLEVGWVPPMKGGAGPYPGLFLNSEGARMCRPVLHLQSGRMEWIGPMAQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFERGFGHASVLKTFAVDLRDVAGKGAGPAAVARLKFCNVKPGSVGAG-GAAAATKLHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGK-------------------------------------------------------------------------------------TIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQSXXXXXXXXXXXXXXXXXXXXXXIRCITC---PA-SGGKGGGGKVLAVAIP 1047          
BLAST of mRNA_A-nodosum_M_contig874.3.7 vs. uniprot
Match: A0A835YVF9_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF9_9STRA)

HSP 1 Score: 1417 bits (3669), Expect = 0.000e+0
Identity = 730/1197 (60.99%), Postives = 895/1197 (74.77%), Query Frame = 0
Query:   32 PVTGPSFTLNSIPSKATAEKRRSLVAPHVDSYNFFLGEGLAEAVKDMPPLVMEVGEGGPVLKIWVEGMAVGYPGKKNEESASSKLHPRECRERGLTYQGVLHVDLCYQVGSGPIVRTQRRAGDCPVMVGSGRCHLQGLGSAQLCRKREEAGEMGGFFIVRGIERVIRLLQVPKRNYPHAISRATFKNRGQGYSTKGIIMRC--------------------ARKDQTTVTVTLHYISTGGSTLRFSVLKQEFLVPVVIILKALRDTTDREIHERLLQGDRENTFLAAHVEVLLRESKRWGLHSRMESLAFLGSTFRTLMSATSKTTDVELGKKVIDRFVLVHLTRHADKQECLLLMLRKLYALVQGRCQEDNQDALANHELLLPGHLFGMILKERVENWLEKVRQFIGRDARANASKTVMQVHDGKYVGKLLDRFGSVVGQGMSTFLSTGNITSVTGLDLMQVSGFTIVAERINFLRYLSHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGAPCGLLNHLATTCRSPSSIESLLVRLGVAPAGTGAGDGSTSLPHNFLPVMLDGRVVGGGREATLARAAAELRRLKVAGGAGGLAGVWVDPTLEVGLVPVMAGGAGPYPGLFLNTGGARMCRPVLHLATGKAEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHSLTPHRIDNKMYKVLFPQAAIVQTRRHAEYQMDDYPQGTNAVVAVISYTGYDMEDAMILNKSSFERGFGHGSVLKTSVVDLKDVAGKLASPGEVARLRFCNTAPESTGAVRGRRRDDKLHESLGWDGLPVVGSWVESGDPLYCVVDQLTGKVTVGKHKESEKACVETVRALGREGIDKTPLSRVSITLRFQRNPVVGDKFSSRHGQKGVMSILWPTEDMPFTEAGMSPDVIINPHAFPSRMTIGMLIESMAGKSGALHGTFQDATPFAFHEKDRVIDHFGEQLRAAGFAYYGSEPLYSGVNGTVMHGDIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCASCGSLLSTSARRGTVATAGFSAAAAAVAAREGEGFDVSSGGGGIRCITCSVDPARAGGSSGGERVVAVAMPYVFRYLANELAGMGIKVTL 1208
            P TGPS+ ++++PS ATAEK +SLV  HV+S+N FL EGL +AV D+P + + VGE GP++++W E + +GYPG+  +E++ +KL PRECRER LTY   +HV++ YQ+      R QRR G+CP+MV S RCHL GLG  ++   +EE  E+GG+FIV G+ERVIRLLQVP+RN+  AI R+ FKNRGQ YS  G+ MRC                     R+D +T TVTLHY++TGG+TLR+SV + EFLVPV++++KALR+ +DRE++ER+L GD  NT LAA +EVLL ++ R GLH+R + LAFLGS FR + + T   +D+ LG ++I+R VLVHL RH DKQE LL ML+K                        PGHLF M +KE++ + L KVR  + + +R + +K ++   D K + KL+DR+G   GQ M++FLSTGNIT+ TGLDLMQ SGFT+VAERIN LRYLSHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGAPCGLLNH+A  C+       +LV LG+ PAG G+GDGST+LP+ ++PVM+DGRVVGGG   TL   +  LRRLKVA          V+PT+EV L+P M  G+GP+PGLFL TG +RM RPVL++   K EWIGP+EQ FMEIACLA + +    TH E+DPTNMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTPAH L PH+ DNKMY++LFPQA +V TRRH E+QMD+YPQGTNAVVAVISYTG+DMEDAMILNKS+FERGF H SV+KT  +DLKD+  K  S   V ++RF NTA +  G         KL+E+L  DGLP +G+ V+ GDPLYC +D  T K   GKHKESE A VETVRA+G  GI+K  +++ S+TLRF RNP++GDKFSSRHGQKGVMSILWP  DMPFTE+GM+PD+IINPHAFPSRMTIGMLIESMAGK+GALHG FQDATPF+FHEK+RVIDHFGEQL++AG+AYYGSEPLYSG++GTVMH DIFIGLVYYQRLRHMVSDKSQVRA+G VN LTRQPIKGRKNKGG+R GEMERD+LLSHGAAFLLHDRLMNCSDRH+AHVC +CGS+LS   +R  V +AG S      A+R              R I  ++   +  G     ++ +VAMPYVFRYLANELAGMGIK+TL
Sbjct:   33 PRTGPSYDISNLPSAATAEKMQSLVDAHVNSFNQFLDEGLNDAVLDLPDVELRVGEDGPLMRLWYESVELGYPGRSRDETSGAKLVPRECRERNLTYGAPIHVNIAYQLEGSEAQRVQRRLGECPIMVRSKRCHLAGLGPKEMVALKEEDTEIGGYFIVGGLERVIRLLQVPRRNHAQAIRRSAFKNRGQVYSDLGVSMRCDHSPLQLXXXXXXXXXXXXXGRRDHSTATVTLHYLTTGGATLRWSVRRAEFLVPVMVVIKALREISDRELYERVLAGDTANTQLAARLEVLLLDAARVGLHTREQCLAFLGSRFRAVGNRTDVHSDLALGIEIINRHVLVHLKRHEDKQETLLHMLKK------------------------PGHLFTMYMKEKLFDVLVKVRSELLKQSRIDVAKALLAAQDPKTIIKLVDRYGIGTGQRMASFLSTGNITTSTGLDLMQASGFTVVAERINMLRYLSHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGAPCGLLNHMAAECQ-------ILVSLGMTPAGIGSGDGSTALPYYYMPVMVDGRVVGGGTHETLQAVSRGLRRLKVATPPA------VEPTMEVALLPPMKKGSGPFPGLFLFTGASRMIRPVLNIEFCKREWIGPLEQPFMEIACLASEAKGTGATHCEIDPTNMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLYPHKTDNKMYRILFPQAPLVMTRRHREFQMDNYPQGTNAVVAVISYTGFDMEDAMILNKSAFERGFAHASVVKTIKIDLKDLLTKSDSKTMVGKMRFTNTAADGKGG--------KLYENLDNDGLPRIGACVKEGDPLYCAIDLRTNKTKTGKHKESEMAYVETVRAVGGAGINKEAMAKASMTLRFPRNPIIGDKFSSRHGQKGVMSILWPQSDMPFTESGMTPDIIINPHAFPSRMTIGMLIESMAGKAGALHGHFQDATPFSFHEKNRVIDHFGEQLKSAGYAYYGSEPLYSGISGTVMHADIFIGLVYYQRLRHMVSDKSQVRASGAVNPLTRQPIKGRKNKGGIRFGEMERDSLLSHGAAFLLHDRLMNCSDRHLAHVCCTCGSMLSPCHQRSAVTSAGRSEEEVIQASR-------------CRYICRALKTCQDKG-----QIESVAMPYVFRYLANELAGMGIKLTL 1166          
BLAST of mRNA_A-nodosum_M_contig874.3.7 vs. uniprot
Match: W7TET2_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TET2_9STRA)

HSP 1 Score: 1325 bits (3428), Expect = 0.000e+0
Identity = 716/1242 (57.65%), Postives = 868/1242 (69.89%), Query Frame = 0
Query:   14 IVDGALRQQRVTKGSS--RQPVT--------GPSFTLNSIPSKATAEKRRSLVAPHVDSYNFFLGEGLAEAVKDMPPLVMEV---GEGGPVLKIWVEGMAVGYPGKKNEESASSKLHPRECRERGLTYQGVLHVDLCYQVGSGPIVRTQRRAGDCPVMVGSGRCHLQGLGSAQLCRKREEAGEMGGFFIVRGIERVIRLLQVPKRNYPHAISRATFKNRGQGYSTKGIIMRCARKDQTTVTVTLHYISTGGSTLRFSVLKQEFLVPVVIILKALRDTTDREIHERLLQGDRENTFLAAHVEVLLRESKRWGLHSRMESLAFLGSTFRTLMSATSKTTDVELGKKVIDRFVLVHLTRHADKQECLLLMLRKLYALVQGRCQEDNQDALANHELLLPGHLFGMILKERVENWLEKVRQFIGRDARANASKTVMQVHDGKYVGKLLDRFGSVVGQGMSTFLSTGNITSVTGLDLMQVSGFTIVAERINFLRYLSHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGAPCGLLNHLATTCR-------------SPSSIESLLVRLGVAPAGTGAGDGSTSLPHNFLPVMLDGRVVGGGREATLARAAAELRRLKVAGG------------AGGLAGVW-VDPTLEVGLVPVMAGGAGPYPGLFLNTGGARMCRPVLHLATGKAEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHSLTPHRIDNKMYKVLFPQAAIVQTRRHAEYQMDDYPQGTNAVVAVISYTGYDMEDAMILNKSSFERGFGHGSVLKTSVVDLK-DVAGKLASPGEVARLRFCNTAPESTGAVRG--RRRDDKLHESLGWDGLPVVGSWVESGDPLYCVVDQLTGKVTVGKHKESEKACVETVRALGREGIDKT--PLSRVSITLRFQRNPVVGDKFSSRHGQKGVMSILWPTEDMPFTEAGMSPDVIINPHAFPSRMTIGMLIESMAGKSGALHGTFQDATPFAFHEKDRVIDHFGEQLRAAGFAYYGSEPLYSGVNGTVMHGDIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCASCGSLLSTSARRGTV---ATAGFSAAAAAVAAREGEGFDVSSGGGGIRCITCSVDPARAGGSSGGERVVAVAMPYVFRYLANELAGMGIKVTL 1208
            I D  ++++ ++ GSS  R   T        GPSFT   +P  A   + + +VAPHV+S+N+FL  GL EAV  + P+ + +   GE GP+LK WVE   +G+P     + ++    PRECRERGL Y   +      Q   G ++R QR  G+ P+MV S RC L G  + +L   +EEA E GG+FIV GIER+IRLLQ+P+RN+  AISR TFK RG GYS KG+ MRC R DQ+++TVTLHY++ G +T R ++LKQEFLVPVV++LKALRD TD E++ER+  GD +NT+L   VE+LLRES  +   SR ++L++LGS FRT++  ++  +D + G+ ++DRFV +HL  HADKQECLL MLRKLYA VQGRC+ DN D+  N ELLLPGHL+ + +KE++E  L    Q + ++ R + ++ +    D  Y  +LL R G+ VG+  +  LSTGN+ S TG+D+MQVSG+TIVAER+NF R+LSHF+SVHRGQFFTTMKTTAVRKLLPES+GFLCPVHTPDG+PCGLLNH+AT  R                    LLV LGV+P G G+ DG+  L  + LPV+LDGRVVGG       R    LRR K                A  L G   VD TLEV  +  + GG  P PGLFL +G ARM RPVLHL TG  E+IGPMEQ FME+A L +DVR G TTH+ELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTP  S  PHR DNK+Y++L PQA IVQTRRHAEY MD++PQGTNAVVAVISYTGYDMEDAMIL+K+S++RG     V KT  V L+ D+ G    P     LRF N    +  A R    R  D L E L  DGLPVVG+WV+ GD LY  VD LTG+V VGKHKESE ACVE VR LG EG      PL  VSITLRF R P++GDKFSSRHGQKGV+SILWP EDMPFTE+GMSPD+IINPHAFPSRMTIGMLIESMAGKSG+LHG +QDATPF+FHE  R ID+FGEQLRAAG+AY+GSEPLYSG++GT+MH DIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRK  GG+R GEMERD+LLSHG ++LLHDRLMNCSDRH+AHVC  CGSL+  +  + TV   A AG   A AAVA+ + +          + C  C            G +   VA+PYVFRYL NELA M IK+ L
Sbjct:   17 ICDERIKKKHISNGSSQGRHADTEQVDPGPDGPSFTRGPLPPAAAVCRYKEVVAPHVESFNYFLDTGLREAVSCLFPVELRLSKDGESGPLLKSWVEECEIGFP---TGDGSTGLYTPRECRERGLMYAAPIRAVFRIQREGGGVMRVQRTLGELPIMVCSSRCRLAGKKAEELVALKEEACECGGYFIVNGIERIIRLLQLPRRNHAMAISRNTFKGRGTGYSDKGVTMRCVRPDQSSITVTLHYLTNGNATFRVTILKQEFLVPVVLVLKALRDLTDEELYERITLGDEDNTYLVTRVEMLLRESHDFATFSRNKALSYLGSRFRTVLGLSNAHSDADCGRALVDRFVCIHLGHHADKQECLLHMLRKLYAFVQGRCRADNPDSFMNQELLLPGHLYSVFVKEKLEETLTAAFQQLRKECREDLARALAATQDEAYWAQLLGRHGAGVGKKAAYLLSTGNLVSRTGMDMMQVSGYTIVAERLNFFRFLSHFQSVHRGQFFTTMKTTAVRKLLPESFGFLCPVHTPDGSPCGLLNHVATAARVLCHEDRLQGGRVRGGLATDLLVGLGVSPGGAGSADGALVLSKDHLPVLLDGRVVGGAPVDICRRVVRALRRFKAVSAPPPNPDAVQGPDAQRLRGKGRVDATLEVAFIHPVRGG--PAPGLFLFSGAARMVRPVLHLETGCVEYIGPMEQVFMEVALLPEDVRAGETTHQELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPTTSY-PHRTDNKLYRILTPQAPIVQTRRHAEYGMDEFPQGTNAVVAVISYTGYDMEDAMILSKASYDRGMAAADVYKTKSVSLRRDMRGGPKRPD----LRFSNLRTPAVVAKRQFPGRVGDPLFEKLEADGLPVVGTWVKEGDVLYSAVDSLTGEVEVGKHKESEVACVEAVRLLGLEGTSGATEPLDTVSITLRFPRRPIIGDKFSSRHGQKGVLSILWPQEDMPFTESGMSPDIIINPHAFPSRMTIGMLIESMAGKSGSLHGMYQDATPFSFHEDRRAIDYFGEQLRAAGYAYFGSEPLYSGLSGTLMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKRHGGIRFGEMERDSLLSHGTSYLLHDRLMNCSDRHLAHVCQECGSLVGPTMTKSTVLSAAQAGTMTAVAAVASSQAK----------VICRAC------------GGKARTVALPYVFRYLTNELAAMNIKLRL 1226          
BLAST of mRNA_A-nodosum_M_contig874.3.7 vs. uniprot
Match: A0A7S3V7B4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7B4_9STRA)

HSP 1 Score: 1276 bits (3303), Expect = 0.000e+0
Identity = 682/1266 (53.87%), Postives = 874/1266 (69.04%), Query Frame = 0
Query:   17 GALRQQRVTKGSSRQPV----TGPSFTLNSIPSKATAEKRRSLVAPHVDSYNFFLGEGLAEAVKDMPPLVMEV----------GEGGPVLKIWVEGMAVGYPGKKNEESASS---KLHPRECRERGLTYQGVLHVDLCYQVG-------------SGPIVRTQRRAGDCPVMVGSGRCHLQGLGSAQLCRKREEAGEMGGFFIVRGIERVIRLLQVPKRNYPHAISRATFKNRGQGYSTKGIIMRCAR--KDQTTVTVTLHYISTGGSTLRFSVLKQEFLVPVVIILKALRDT-------TDREIHERLLQGDRENTFLAAHVEVLLRESKRW-GLHSRMESLAFLGSTFRTLMSATSKTTDVELGKKVIDRFVLVHLTRHADKQECLLLMLRKLYALVQGRCQEDNQDALANHELLLPGHLFGMILKERVENWLEKVRQFIGRDARANASKTVMQVHDGKYVGKLLDRFGSVVGQGMST----FLSTGNITSVTGLDLMQVSGFTIVAERINFLRYLSHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGAPCGLLNHLAT-----TCRSP------SSIESLLVRLGVAPAGTG--AGDGSTSLPHNFLPVMLDGRVVGGGREATLARAAAELRRLKVAGGAGGLAGVWVDPTLEVGLVPVMAGGAGPYPGLFLNTGGARMCRPVLHLATGKAEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHSLTPHRIDNKMYKVLFPQAAIVQTRRHAEYQMDDYPQGTNAVVAVISYTGYDMEDAMILNKSSFERGFGHGSVLKTSVVDLKDVAGKLASP--GEVARLRFCNTA------PESTGAVRGRRRDDKLHESLGWDGLPVVGSWVESGDPLYCVVDQLTGKVTVGKHKESEKACVETVRALGREGIDKTPLSR---VSITLRFQRNPVVGDKFSSRHGQKGVMSILWPTEDMPFTEAGMSPDVIINPHAFPSRMTIGMLIESMAGKSGALHGTFQDATPFAFHEK-DRV-IDHFGEQLRAAGFAYYGSEPLYSGVNGTVMHGDIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCASCGSLLSTSARRGTVATAGFSAAAAAVAAREGEGFDVSSGGGGIRCIT----CSVDPARAGGSSGGERVVAVAMPYVFRYLANELAGMGIKVTL 1208
            GA  +   T   SR+ V    T PSF     PS +  ++ R+L  PHV S+++FL  GL+E +KD+ P  +++           +    +K+WVE + V  P   +  S S    +L PRECRE GL Y G +H ++C+Q+                 I R  ++ GD P+MV S  CHL G    QL + +EE  E GG+FIV GIER +RLLQ+P+RN+P AI R+ +K+RG  Y+  G+ +RCAR  +DQT++T T+HY++TGG++L+F+  KQEFL+P+++IL+AL  T       +D E++ R+LQGD ENTFL A  E+LL++S+R+ GL +  E + F+GS FR L      +TD ++G  +I +F+L+H+  + DK ECLLL++RKLY+   G C  DN D+L N E+L+PGHL    +KE+ E     +R  + ++ R + SK +  + D     K++DR+G++ G G+      FLSTGNI S +GLDLMQVSG+TIVAER+NFLRY +HFRSVHRGQFF  MKTTAVRKLLP+ WGFLCPVHTPDG PCGLL+H+A      T  +P       S++ LL++LG +P+G G  +GDG     H  +P+ LDGRV+GG         AA+LR++KV   A       V PTLEV L+P    G GPYPGLFL TG AR+ RPVLH A+GK E IGPMEQ FM+IACLA+DVR G+TTH+ELDP NMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTP HSL PHR DNK+Y++  PQAAI QT RH +Y+MD+YP GTNAVVAV+SYTG+DMEDAMILNKS++ERGFGH SV KT  VD+KD A +  S   G+  R++F N        P + G +     D+ L+ +LG DGLP VG+WV+ GDP+YCVVD+LTG+   GKHKE EKAC++ VR LG+    K  ++R   VSITLR  RNPV+GDKFSSRHGQKGV+SILWP  DMPF+E+G+SPDVIINPHAFPSRMTIGMLIESMAGKSGA+HG FQDATPF+FHE  D++ +D+FGEQL++AG++YYGSEPLYSGV+G +MH D++IG+VYYQRLRHMVSDK Q RATG VN LTRQPIKGRK  GG+RLGEMERD+LLSHG AFLLHDRL+NCSD+HVA+ C  CG LLS +  + +V TAG SA  A   AR             +R       C     R G +   E V  + +PYVFRYLANELAGM IK+T+
Sbjct:    2 GAAAESSKTPKKSREKVVIKETCPSFRRGHAPSFSDVKRLRTLSLPHVGSFDYFLERGLSEGIKDIEPFEIDLVDPKKSGSKKNKEVQTIKMWVENVRVDRPVSASGGSHSKLGGRLTPRECRELGLMYSGPMHGEICFQINHRQINDDGSISEIENSIQRIPKKFGDMPIMVMSKACHLHGKNPEQLIQMKEEQNEFGGYFIVNGIERCVRLLQIPRRNHPTAIQRSNYKSRGPTYTDLGVAIRCARHNEDQTSITNTVHYLTTGGASLKFTARKQEFLIPIILILRALSGTKYGLGGVSDEELYNRILQGDEENTFLKARAELLLQDSQRFQGLSTPNECVEFIGSRFRMLSMKADSSTDEDIGHYIIKKFILIHIPEYGDKLECLLLLIRKLYSFAAGDCGVDNADSLQNQEILMPGHLVCSFVKEKFEEMFMAIRIGMLKEMRQDFSKILGNIQDTSTFSKIVDRYGNLAGGGIGKKVQHFLSTGNIISSSGLDLMQVSGYTIVAERLNFLRYCAHFRSVHRGQFFLEMKTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHMALKSIPMTYPAPLSGDNLQSLDDLLIKLGASPSGAGGISGDGRGPSIHTHVPICLDGRVIGGASAKRCKSIAAQLRQMKVEDNA------TVPPTLEVALIPKGVKG-GPYPGLFLFTGAARLVRPVLHRASGKEEMIGPMEQPFMDIACLAEDVREGITTHQELDPMNMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPCHSL-PHRTDNKLYRLQNPQAAIAQTARHGKYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSAYERGFGHASVYKTMKVDIKDEAERAGSDTKGDKPRMKFGNKTVRRAKDPSAAGGIG--TTDEVLYPNLGEDGLPEVGTWVDEGDPIYCVVDELTGRTRPGKHKEKEKACIQQVRLLGQPSASKDKVNRDDIVSITLRIPRNPVIGDKFSSRHGQKGVLSILWPQTDMPFSESGISPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGMFQDATPFSFHESGDKIAVDYFGEQLQSAGYSYYGSEPLYSGVSGCLMHADLYIGVVYYQRLRHMVSDKYQARATGQVNALTRQPIKGRKKGGGIRLGEMERDSLLSHGTAFLLHDRLLNCSDKHVAYACRRCGDLLSPTTEKSSVLTAGQSALQAMSGAR-------------LRVFCRNPMCRDKSEREGAND--EMVEPIVLPYVFRYLANELAGMNIKMTM 1242          
BLAST of mRNA_A-nodosum_M_contig874.3.7 vs. uniprot
Match: A0A6U3PLE0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3PLE0_9STRA)

HSP 1 Score: 1236 bits (3198), Expect = 0.000e+0
Identity = 685/1289 (53.14%), Postives = 858/1289 (66.56%), Query Frame = 0
Query:   36 PSFTLNSIPSKATAEKRRSLVAPHVDSYNFFLGEGLAEAVKDMPPLVMEV-------GEGG---PV---------LKIWVEGMAVGYPGKKNEESASSKLHPRECRERGLTYQGVLHVDLCYQ-------------VGSGPIVRTQRRAGDCPVMVGSGRCHLQGLGSAQLCRKREEAGEMGGFFIVRGIERVIRLLQVPKRNYPHAISRATFKNRGQGYSTKGIIMRCAR--KDQTTVTVTLHYISTGGSTLRFSVLKQEFLVPVVIILKAL--------------------------------RDT----------TDREIHERLLQGDRENTFLAAHVEVLLRESKRWGLHSRMESLAFLGSTFRTLMSATSKTTDVELGKKVIDRFVLVHLTRHADKQECLLLMLRKLYALVQGRCQEDNQDALANHELLLPGHLFGMILKERVENWLEKVRQFIGRDARANASKTVMQVHDGKYVGKLLDRFGSV----VGQGMSTFLSTGNITSVTGLDLMQVSGFTIVAERINFLRYLSHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGAPCGLLNHLATTCR----------SPSSIESLLVRLGVAPAGTGA--GDGSTSLPHNFLPVMLDGRVVGGGREATLARAAAELRRLKVAGGAGGLAGVWVDPTLEVGLVPVMAGGAGPYPGLFLNTGGARMCRPVLHLATGKAEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHSLTPHRIDNKMYKVLFPQAAIVQTRRHAEYQMDDYPQGTNAVVAVISYTGYDMEDAMILNKSSFERGFGHGSVLKTSVVDLKDVA---GKLASPGEVARLRFCNTAPE--STGAVRGRRRDDK------LHESLGWDGLPVVGSWVESGDPLYCVVDQLTGKVTVGKHKESEKACVETVRALGREGIDKTPLSR-----------VSITLRFQRNPVVGDKFSSRHGQKGVMSILWPTEDMPFTEAGMSPDVIINPHAFPSRMTIGMLIESMAGKSGALHGTFQDATPFAFHEK-DRV-IDHFGEQLRAAGFAYYGSEPLYSGVNGTVMHGDIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCASCGSLLSTSARRGTVATAGFSAAAAAVAAREGEGFDVSSGGGGIRCITCSVDPARAGGSSGGERVVAVAMPYVFRYLANELAGMGIKVTL 1208
            PSF  + + S     K RSL APHV+S+N+FL EGL  A+ D+ PL +++        EG    P+         +K W E + +  P K  E S   +L+PRECRE GL Y G +  D CYQ             V  G + R  RR G+ P+MV S  C+L      +L + REE  E GG+FIV+GIER +RLLQ+P+RN+P AI R+ ++NRG  Y+  G+ +RC+R  +DQ+++T TLHY++TGG+TL+F V KQEFLVPVV++L+AL                                R+T          TD EI+ R++QGD  NTFL A  E+LL++++++   S +E LA+LGS FR L +  +  +D+++G  +I RF+L+HL  +A KQE LLLMLRKLYA   G C  DN D+L N E+LLPGHL   ++KE+ E  L  +R  + ++ R N +K +       + G+ +DR   +    +G+ ++TFLSTGNI S +GLDLMQVSG+TIVAER+N+LRY +HFRSVHRGQFF  MKTT+VRKLLP+ WGFLCPVHTPDG PCGLL+HLA  C           S + ++ LL+ LGV P G G    DG  +  H  LPV LDGRV+GG            LR LKVA          V  +LEV  +P    G GPYPGL+L T  AR+ RPVLH +TG AE IGPMEQ F++IACL  D+R G+TTH+ELDPTNMLSL++SLTPFSDYNQSPRNMYQCQMGKQTMGTP HSL PHR DNK+Y++  PQA +VQT RH EY+MD+YP GTNAVVAV+SYTG+DMEDAMILNKSSFERGFGH SV KT  VDL++ A   G   + GE +R++F N   +  ++G+  G            L+ ++G DGLP VG+WV+ GDPLYCV+D+LTG     KHKE E ACV++VR LG      T   R           VSITLR  RNPV+GDKFSSRHGQKGV+SILWP EDMPF+E+G+SPDVIINPHAFPSRMTIGMLIESMAGKSGA+HG FQDATPF+FHE  D++ ID+FGEQL+AAG+ YYGSEPLYSGV+G +MH D++IG+V+YQRLRHMVSDK QVRATG VNQLTRQPIKGRK  GG+RLGEMERD+LLSHG AFLLHDRL+NCSDRHV++ C  CG LLS +  R TV +AG S A A   AR      V       R   C    AR G +   + V  + +PYV+RYLANELAGM IK+TL
Sbjct:   13 PSFQKSHLHSNEYHSKIRSLSAPHVESFNYFLEEGLRRAINDIVPLEVDMIDPKAKKKEGSAEHPLKEAKGDFDSIKFWFERVKIAPPTKMTE-SGMKRLYPRECREMGLMYSGTMIGDFCYQFVSRNKTKSGVREVVEGKVNRIPRRFGEVPIMVMSKSCNLSNKKPKELVKLREEQSEFGGYFIVKGIERCVRLLQIPRRNHPTAIQRSNYRNRGNTYTDLGVAIRCSRYNEDQSSITNTLHYLTTGGATLKFMVRKQEFLVPVVLVLRALGVEGGRELDSNVDYLQNGDDLSEDEDSGEEKKRETIGPRRGTRCFTDEEIYHRVVQGDETNTFLKARAELLLQDARKFSQSSPVECLAYLGSRFRPLSNKPNSCSDIDVGHYMIQRFILIHLPSYASKQETLLLMLRKLYAFAAGDCGVDNADSLQNQEILLPGHLISNMIKEKFEESLMDLRLQLLKEMRINFAKLIENSQKEMFWGRTVDRSIGLSSGGIGKKVATFLSTGNIISSSGLDLMQVSGYTIVAERLNWLRYCAHFRSVHRGQFFMEMKTTSVRKLLPDQWGFLCPVHTPDGGPCGLLSHLALKCSILSAPARTETSNADLDELLISLGVVPCGVGGVDSDGRCASTHLSLPVCLDGRVIGGASSKVCRLIGTRLRCLKVA------EKPCVPASLEVAFIPPGIVG-GPYPGLYLFTSAARLVRPVLHRSTGCAELIGPMEQPFLDIACLPQDIREGITTHQELDPTNMLSLISSLTPFSDYNQSPRNMYQCQMGKQTMGTPVHSL-PHRTDNKLYRLQNPQAPVVQTSRHGEYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSFERGFGHASVYKTMQVDLREEAERRGSSTASGEKSRVKFGNKTIKKFASGSAAGSSSKGSSITEGFLYPNIGEDGLPEVGTWVKEGDPLYCVIDELTGADFAAKHKEKESACVQSVRLLGEHISHSTTTQRQKMAPSQQDQKVSITLRIPRNPVIGDKFSSRHGQKGVLSILWPQEDMPFSESGISPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGLFQDATPFSFHETGDKLAIDYFGEQLQAAGYNYYGSEPLYSGVSGCLMHADLYIGVVFYQRLRHMVSDKYQVRATGAVNQLTRQPIKGRKKGGGIRLGEMERDSLLSHGTAFLLHDRLLNCSDRHVSYACTRCGDLLSPATERSTVLSAGQSVAEATSKAR----LRVY-----CRNSACRNQAAREGAND--DSVEPIVLPYVYRYLANELAGMNIKMTL 1281          
BLAST of mRNA_A-nodosum_M_contig874.3.7 vs. uniprot
Match: A0A7S4JAV2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAV2_9STRA)

HSP 1 Score: 1229 bits (3180), Expect = 0.000e+0
Identity = 678/1289 (52.60%), Postives = 847/1289 (65.71%), Query Frame = 0
Query:   16 DGALRQQRVTKGSSRQPVTGPSFTLNSIPSKATAEKRRSLVAPHVDSYNFFLGEGLAEAVKDMPPLVMEV---------GEGGPV------LKIWVEGMAVGYPGKKNEESASSKLHPRECRERGLTYQGVLHVDLCYQV------GS---GPIVRTQRRAGDCPVMVGSGRCHLQGLGSAQLCRKREEAGEMGGFFIVRGIERVIRLLQVPKRNYPHAISRATFKNRGQGYSTKGIIMRCARK--DQTTVTVTLHYISTGGSTLRFSVLKQEFLVPVVIILKALRD-------------TTDREIHERLLQGDRENTFLAAHVEVLLRESKRWG-LHSRMESLAFLGSTFRTLMSATSKTTDVELGKKVIDRFVLVHLTRHADKQECLLLMLRKLYALVQGRCQEDNQDALANHELLLPGHLFGMILKERVENWLEKVRQFIGRDARANASKTVMQVHDGKYVGKLLDRFGSV------VGQGMSTFLSTGNITSVTGLDLMQVSGFTIVAERINFLRYLSHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGAPCGLLNHLATTCRSPS-----------SIESLLVRLGVAPAGTGA--GDGSTSLPHNFLPVMLDGRVVGGGREATLARAAAELRRLKVAGGAGGLAGVWVDPTLEVGLVPVMAGGAGPYPGLFLNTGGARMCRPVLHLATGKAEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHSLTPHRIDNKMYKVLFPQAAIVQTRRHAEYQMDDYPQGTNAVVAVISYTGYDMEDAMILNKSSFERGFGHGSVLKTSVVDLKDVAGKLASPGE------VARLRFCNTA--PESTGAVRG-------------RRRDDKLHESLGWDGLPVVGSWVESGDPLYCVVDQLTGKVTVGKHKESEKACVETVRALG--------------REGIDKTPLSRVSITLRFQRNPVVGDKFSSRHGQKGVMSILWPTEDMPFTEAGMSPDVIINPHAFPSRMTIGMLIESMAGKSGALHGTFQDATPFAFHE-KDRV-IDHFGEQLRAAGFAYYGSEPLYSGVNGTVMHGDIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCASCGSLLSTSARRGTVATAGFSAAAAAVAAREGEGFDVSSGGGGIRCITCSVDPARAGGSSGGERVVAVAMPYVFRYLANELAGMGIKVTL 1208
            D  + +   T  S R+  T PSF    +PS+  AE+ R++ APHV+S+++FL  GL  AV D+ P  ++V         G    V      ++ WVE   +  P K      +++L PRECRE  +TY G +  D CYQ       GS   G + R  +R GD P+M  S  CHL+G    +L R +EE  E GG+FIV GIER +R+LQ+P+RN+P AI R ++K RG  Y+  G+ +R AR   D +++T T+HY++TGG++LRF   KQEFL+PVV++L+AL                TD E++ R+++GD  NTFL A  E+LL++++R+  L    E LA+LG+ FR L      T+DV++G+ +IDRFVL+HL  H+DK E LLL+LRKLY+   G C  DN D+  N E+LLPGHL    +KE+ E  L+ VR  + ++ R + ++    V D ++  +++DR+  +      +G+ +  FLSTGNI S TGLDLMQVSG+TI+AER+NFLRY +HFRSVHRGQFF  M+TTAVRKLLP+ WGFLCPVHTPDG PCGLL+HLA  C   S            ++ LL+ +GV P GTG   GDG  +     LPV LDGRVVGG         A  LR LKVA          V PTLEV  +P       PYPGL+L TG AR+ RPVLH  TG+ E IGPMEQ FM+IACL +DVR G+TTH ELDP NMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTP HSL P+R DNK+Y++  PQA +VQT RH  + MD+YP GTNAVVAV+SYTG+DMEDAMILNKSS+ERGFGH SV KT  VDL+D A  + + G        ARL+F N    PE                    +     LH +L  DGLP+ G WV  GD LYCVVD LTGK  VG+HKE EKACV+ VR LG              R      P  ++S+TLRF RNPV+GDKFSSRHGQKGVMSILWP  DMPF+E+G+SPDVIINPHAFPSRMTIGMLIESMAGK+GALHG +QDATPF+FHE  D++ +D+FGEQL+AAG++YYGSEPLYSGV+G +M  D+++G+VYYQRLRHMVSDK QVRATG VN +TRQPIKGRK  GGVRLGEMERD+LLSHGAAFLL DRL+NCSDRHVA  C  CG LL  +  R +V +AG SAA A   AR             + C       A A G+   + V  +A+PYVFRYLANELAGM IK+TL
Sbjct:   21 DARMAKPSSTSKSPRE--TCPSFARGHLPSEEQAERYRAISAPHVESFDYFLTTGLRAAVSDVVPNELDVVDPREKREMGAASAVKEDVDCVRFWVENARISLPSKIAISGGAARLTPRECREMAMTYAGGMTADFCYQFIDRRADGSEVEGKVSRCNKRFGDMPIMTMSRACHLRGKSPEKLVRMKEEHNEFGGYFIVNGIERCVRILQIPRRNHPTAIQRGSYKKRGPTYTDLGVAVRSARHCGDCSSITNTVHYLTTGGASLRFPARKQEFLIPVVLLLRALSGXXXXXXXXXXXXXVTDEELYRRIVRGDSTNTFLRARAELLLQDARRFSDLADPSECLAYLGARFRMLSGRADSTSDVDVGRYMIDRFVLIHLPNHSDKLEYLLLLLRKLYSFAAGECGVDNADSFQNQEILLPGHLICHYVKEKFEESLQSVRLGLLKEMRVDFARAYSSVKDSRWWSRMVDRYAGIGGNASSIGKKVQHFLSTGNIVSSTGLDLMQVSGYTIIAERLNFLRYCAHFRSVHRGQFFMEMRTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHLALKCEVMSYPAETMGGKLQDLDELLIGMGVTPCGTGGAGGDGRGTPDRGHLPVCLDGRVVGGAPARLCKSIAIHLRELKVAEPE-----PIVPPTLEVAHIPSTGSDGEPYPGLYLFTGSARVVRPVLHRRTGRTERIGPMEQPFMDIACLREDVREGITTHMELDPNNMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPVHSL-PYRPDNKLYRLQNPQAPVVQTARHGAFNMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYERGFGHASVYKTMTVDLRDKAEHMGAKGGGCDGSGEARLKFSNILKKPEXXXXXXXXXXXXXXXXXKVEKNAAPWLHRTLDEDGLPMPGEWVSEGDALYCVVDTLTGKDNVGRHKEKEKACVQCVRKLGSASAGQSMNSKSGGRGSSSAVPDEKISLTLRFPRNPVIGDKFSSRHGQKGVMSILWPQVDMPFSESGISPDVIINPHAFPSRMTIGMLIESMAGKAGALHGIYQDATPFSFHETSDKLAVDYFGEQLQAAGYSYYGSEPLYSGVSGCIMQADLYLGVVYYQRLRHMVSDKYQVRATGSVNAVTRQPIKGRKQGGGVRLGEMERDSLLSHGAAFLLLDRLVNCSDRHVARACRRCGDLLGPTTERSSVLSAGQSAAEATNRARLR-----------VYCRNPRCREATAEGADD-DAVEPIALPYVFRYLANELAGMNIKMTL 1289          
BLAST of mRNA_A-nodosum_M_contig874.3.7 vs. uniprot
Match: A0A5D6YCW8_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCW8_9STRA)

HSP 1 Score: 1215 bits (3143), Expect = 0.000e+0
Identity = 661/1197 (55.22%), Postives = 822/1197 (68.67%), Query Frame = 0
Query:   32 PVTGPSFTLNSIPSKATAEKRRSLVAPHVDSYNFFLGEGLAEAVKDMPPLVMEVGEGGPVLKIWVEGMAVGYPGKKNEESASSKLHPRECRERGLTYQGVLHVDLCYQ-VGSGPIVRTQRRAGDCPVMVGSGRCHLQGLGSAQLCRKREEAGEMGGFFIVRGIERVIRLLQVPKRNYPHAISRATFKNRGQGYSTKGIIMRCARKDQTTVTVTLHYISTGGSTLRFSVLKQEFLVPVVIILKALRDTTDREIHERLLQGDRENTFLAAHVEVLLRESKRWGLHSRMESLAFLGSTFRTLM-SATSKTTDVELGKKVIDRFVLVHLTR----HADKQECLLLMLRKLYALVQGRCQEDNQDALANHELLLPGHLFGMILKERVENWLEKVRQFIGRDARANASKTVMQVHDGKYVGKLLDRFGSVVGQGMSTFLSTGNITSVTGLDLMQVSGFTIVAERINFLRYLSHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGAPCGLLNHLATTCRSPS--------------SIESLLVRLGVAPAGTGAGDGSTSLPHNFLPVMLDGRVVGGGREATLARAAAELRRLKVAGGAGGLAGVWVDPTLEVGLVPVMAGGAGPYPGLFLNTGGARMCRPVLHLATGKAEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHSLTPHRIDNKMYKVLFPQAAIVQTRRHAEYQMDDYPQGTNAVVAVISYTGYDMEDAMILNKSSFERGFGHGSVLKTSVVDLKDVAGKLASPGEVARLRFCNTAPESTGAVRGRRRDDKLHESLGWDGLPVVGSWVESGDPLYCVVDQLTGKVTVGKHKESEKACVETVRALGREGIDKTPLSRVSITLRFQRNPVVGDKFSSRHGQKGVMSILWPTEDMPFTEAGMSPDVIINPHAFPSRMTIGMLIESMAGKSGALHGTFQDATPFAFHEKDRVIDHFGEQLRAAGFAYYGSEPLYSGVNGTVMHGDIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCASCGSLLSTSARRGTVATAGFSAAAAAVAAREGEGFDVSSGGGGIRCITCSVDPARAGGSSGGERVVAVAMPYVFRYLANELAGMGIKVTL 1208
            P T PS +  S P K T EK + LV+PH+DS+NFFL EGL  AV D+  + +E+      + +W+E   VG+P  +N+ S   KL P ECR+RG++Y   L V L     GS  + R QR  GD P+MV S RCHL GL   +L ++REEA EMGG+FI  G ER +RLLQ+P+R++  A+ R  F NRG  Y+   + M+C R+DQ+ VTVT HY+  G +T+RF V KQEF++PV ++LKAL   +DREI+ER+L+G+ ENT+LAA VE++LRE+K++ L+SR E+LA+LG  FR +M +    T++V++G +++D F+ VH+ +     A K E L LMLRKLYA  +G  +EDN D++ NHELLLPGHL+ MILKE+++  L  +R  I +DA    S     V D  ++ K+ DR  ++ GQ M+ FL+TGN+ S +GLDLMQV+G+TIVAE++N+ RY SHFRSVHRGQFFT MKTTAVRKLLP+SWGFLCPVHTPDG+PCGLLNHLA  C   S               +   L  LG+ P  +G  DG+  +P+++LPVML+G+V+GG   A  AR  A LR+LK A  A   A   V   +EV L+    GG   YPGL+L+T  ARM RPV  L T + E+IGPMEQ FM+IA  ADDVRP  TTH E+ PTNMLSLVASLTPFSDYNQSPRNMYQCQM KQTMGTPAHSL  HR DNKMY++  PQ  IVQ  R  EYQ+D+YP GTNAVVAVISYTGYDMEDAMILNKSS+ERGF H SV K   VD+    GK    G  A+  F N  P S          ++   SL  DG P +G  V  GDPL C +D+ TG+    KHKESE A VE +  +G      +  ++  I LRF RNP +GDKFSSRHGQKGVMSILWP  DMPF+E+GMSPD+IINPHAFPSRMTIGMLIESMA K+GAL G + DATPF F EKDRVID+FG QL+  G+ Y GSEPLYSG++GTVMH DI++G+VYYQRLRHMVSDKSQVRATGP+N LTRQP+KGRK  GG+R GEMERD+LL+HG AFLL DRLMNCSD+H+A VC +CGSLLS + +R +V TAG    A A+ A+               C  C            G    AVAMPYVFRYLANELA M IK++L
Sbjct:   22 PATNPSSSSRSCPPK-TNEKLQKLVSPHLDSFNFFLTEGLDLAVADLAKVPVEI-PNQHQMTLWIESAQVGFPTSENQISGERKLFPSECRQRGISYTAPLVVTLARSFAGSAAVERIQRVVGDIPIMVRSKRCHLSGLSPPELVKRREEANEMGGYFICNGNERCVRLLQLPRRHHIMAVRRGAFANRGDLYTELAVFMKCVRRDQSAVTVTCHYLEDGNATVRFGVKKQEFMIPVGLVLKALYPLSDREIYERVLRGEHENTYLAARVELILREAKKFSLYSRDEALAYLGKHFRHVMPNVYEATSNVDVGSRMLDEFLFVHVPKGEKGRAQKVELLCLMLRKLYAFAKGDAREDNADSVMNHELLLPGHLYLMILKEKLQEQLAALRLNILKDATGTGSAKRTVVLDQVFLRKMWDRTPNI-GQAMTYFLNTGNLRSSSGLDLMQVAGYTIVAEKLNYYRYFSHFRSVHRGQFFTEMKTTAVRKLLPDSWGFLCPVHTPDGSPCGLLNHLAVECELVSHPAHAADDFLAHELKVARFLATLGMIPT-SGYADGALVVPYSYLPVMLNGKVLGGAPAAVCARLEAALRQLKSADDAAERAAHGVVANMEVCLILPTLGGV--YPGLYLSTDAARMSRPVRQLDTQRVEYIGPMEQVFMDIAVTADDVRPA-TTHMEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQMAKQTMGTPAHSLV-HRADNKMYRIQSPQVPIVQNERLREYQLDEYPLGTNAVVAVISYTGYDMEDAMILNKSSYERGFAHASVYKQITVDI-GADGKQGGAG-AAKKYFSNVQPGS---------GEQCATSLDRDGFPHIGQVVNYGDPLACWIDETTGQPQFQKHKESEPAIVEQINMVG-SASQASEHTKAGIKLRFCRNPTIGDKFSSRHGQKGVMSILWPQADMPFSESGMSPDIIINPHAFPSRMTIGMLIESMAAKAGALKGKYMDATPFQFSEKDRVIDYFGAQLKEHGYNYMGSEPLYSGISGTVMHADIYMGVVYYQRLRHMVSDKSQVRATGPMNSLTRQPVKGRKKGGGIRFGEMERDSLLAHGCAFLLQDRLMNCSDKHIATVCTNCGSLLSNATQRASVETAGQGEVAVAIKAKSQ-----------WYCQVCR----------DGAHCQAVAMPYVFRYLANELAAMNIKMSL 1177          
BLAST of mRNA_A-nodosum_M_contig874.3.7 vs. uniprot
Match: A0A8K1FE15_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FE15_PYTOL)

HSP 1 Score: 1203 bits (3113), Expect = 0.000e+0
Identity = 646/1197 (53.97%), Postives = 826/1197 (69.01%), Query Frame = 0
Query:   32 PVTGPSFTLNSIPSKATAEKRRSLVAPHVDSYNFFLGEGLAEAVKDMPPLVMEVGEGGPVLKIWVEGMAVGYPGKKNEESASSKLHPRECRERGLTYQGVLHVDLCYQ-VGSGPIVRTQRRAGDCPVMVGSGRCHLQGLGSAQLCRKREEAGEMGGFFIVRGIERVIRLLQVPKRNYPHAISRATFKNRGQGYSTKGIIMRCARKDQTTVTVTLHYISTGGSTLRFSVLKQEFLVPVVIILKALRDTTDREIHERLLQGDRENTFLAAHVEVLLRESKRWGLHSRMESLAFLGSTFRTLMSATSKT-TDVELGKKVIDRFVLVHLTR----HADKQECLLLMLRKLYALVQGRCQEDNQDALANHELLLPGHLFGMILKERVENWLEKVRQFIGRDARANASKTVMQVHDGKYVGKLLDRFGSVVGQGMSTFLSTGNITSVTGLDLMQVSGFTIVAERINFLRYLSHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGAPCGLLNHLATTCRSPS--------------SIESLLVRLGVAPAGTGAGDGSTSLPHNFLPVMLDGRVVGGGREATLARAAAELRRLKVAGGAGGLAGVWVDPTLEVGLVPVMAGGAGPYPGLFLNTGGARMCRPVLHLATGKAEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHSLTPHRIDNKMYKVLFPQAAIVQTRRHAEYQMDDYPQGTNAVVAVISYTGYDMEDAMILNKSSFERGFGHGSVLKTSVVDLKDVAGKLASPGEVARLRFCNTAPESTGAVRGRRRDDKLHESLGWDGLPVVGSWVESGDPLYCVVDQLTGKVTVGKHKESEKACVETVRALGREGIDKTPLSRVSITLRFQRNPVVGDKFSSRHGQKGVMSILWPTEDMPFTEAGMSPDVIINPHAFPSRMTIGMLIESMAGKSGALHGTFQDATPFAFHEKDRVIDHFGEQLRAAGFAYYGSEPLYSGVNGTVMHGDIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCASCGSLLSTSARRGTVATAGFSAAAAAVAAREGEGFDVSSGGGGIRCITCSVDPARAGGSSGGERVVAVAMPYVFRYLANELAGMGIKVTL 1208
            P T PS +  S P+K T EK ++LV+PHVDS+N+F+ EGL  AV D+P  +++V    P + +W+E   +GYP  +N+ +   KL+P ECR+RG++Y   L V L    VGS  + R QR  GD P+MV S RCHL GL   +L + REEA EMGG+FI  G ER +RLLQ+P+R++  A+ R  F NRG  Y+   + M+C ++DQ+ VTVT+HY+  G +TLRF V KQEF++PV ++LKAL   TDREI+ER+L+G+ ENT+L+A  E++LRE+K++ ++SR E+LA+LG  FR +M    ++ ++VE+G K++D ++ VH+ +       K E + LMLRKLYA  +G  +EDN D++ NHELLLPGHL+ MILKE++++ L  VR  I +D + +    VM   D  ++ K+ DR  ++ GQ M  FL+TGN+ S +GLDL+Q++G+TIVAE++N+ RY SH+RSVHRGQFFT MKTTAVRKLLP+SWGFLCPVHTPDG+PCGLLNHLA  C+  S               +   L  LG+ P  +G  DG+  +P+++LP+ML+G+V+GG       R A  LR +K A  A       V   LEV L+    GG   +PGL+L+   ARM RPV  + T + E+IGPMEQ FM+IAC   D+RP  TTH E+ PTNMLSLVASLTPFSDYNQSPRNMYQCQM KQTMGTPAHS+  HR DNKMY++  PQ  IVQ  R  EYQ+D+YP GTNAVVAVISYTGYDMEDAMILNKSS+ERGFGH SV K   VD+    GK  +  + ++  F N   + +G     + D         DG P +G  V  GDPL C +D+ TG+    KHKE+E A +E +  +G      +  ++  I LRF RNPV+GDKFSSRHGQKGVMSILWP E+MPFTE+GMSPDVIINPHAFPSRMTIGMLIESMA K+GAL G + DATPF F EKDRVID+FG+QLR  G+ Y GSEPLYSG++GTVMH DI+IG+VYYQRLRHMVSDKSQVRATG VN LTRQP+KGRK  GG+R GEMERD+LL+HG AFLL DRLMNCSD+H+A VC +CGSLLS + +R TV TAG    A A+ ++               C  C            GE   AVAMPYVFRYLANELA M IK++L
Sbjct:   31 PATNPSSSSRSCPTK-TNEKLQNLVSPHVDSFNYFITEGLDLAVADIPKAIIDV-PNQPQMALWIESAQIGYPTSENQITGERKLYPSECRQRGISYTAPLVVTLARSFVGSNNVERIQRVVGDIPIMVRSKRCHLYGLSPPELVQAREEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFANRGALYTELAVFMKCVKRDQSAVTVTMHYLEDGNATLRFGVRKQEFMIPVGLVLKALYPLTDREIYERVLRGEHENTYLSARAELILREAKKFSIYSRDEALAYLGKHFRHVMPYVYESMSNVEVGSKMLDDYLFVHIPKGEKGRTQKVELICLMLRKLYAFAKGDIREDNSDSVMNHELLLPGHLYNMILKEKLQDQLAMVRANIVKDMQTSKRAVVM---DQVFIRKMWDRTTNI-GQAMLYFLNTGNLRSSSGLDLLQIAGYTIVAEKLNYYRYFSHYRSVHRGQFFTEMKTTAVRKLLPDSWGFLCPVHTPDGSPCGLLNHLAVECQLVSYPAHNADDYLQEELKLARFLTSLGMIPT-SGYTDGALVVPYHYLPIMLNGKVLGGAPAEVCKRIAEVLRHVKSAESADERKEHGVVQNLEVCLIVPTLGGC--FPGLYLSADAARMTRPVKQMDTQRIEYIGPMEQVFMDIACTKADIRPA-TTHMEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQMAKQTMGTPAHSIV-HRTDNKMYRIQSPQIPIVQNERLREYQLDEYPLGTNAVVAVISYTGYDMEDAMILNKSSYERGFGHASVYKQIQVDI-GTEGKQGN--KASKQYFSNLKADGSGEFCTAKLDR--------DGFPHIGQVVNQGDPLACWIDETTGEAHYQKHKETEPAIIEQINMIGSSS-QASEFTKAGIKLRFCRNPVIGDKFSSRHGQKGVMSILWPQENMPFTESGMSPDVIINPHAFPSRMTIGMLIESMAAKAGALKGKYMDATPFQFSEKDRVIDYFGQQLREHGYNYMGSEPLYSGISGTVMHADIYIGVVYYQRLRHMVSDKSQVRATGKVNGLTRQPVKGRKKGGGIRFGEMERDSLLAHGCAFLLQDRLMNCSDKHIATVCTNCGSLLSNATQRATVETAGQGEVAIAMKSKTQ-----------WYCSVCQT----------GESCQAVAMPYVFRYLANELAAMNIKMSL 1183          
BLAST of mRNA_A-nodosum_M_contig874.3.7 vs. uniprot
Match: A0A1E7FFI8_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFI8_9STRA)

HSP 1 Score: 1196 bits (3093), Expect = 0.000e+0
Identity = 640/1223 (52.33%), Postives = 836/1223 (68.36%), Query Frame = 0
Query:   36 PSFTLNSIPSKATAEKRRSLVAPHVDSYNFFLGEGLAEAVKDMPPLVMEV--------------GEGGPVLKIWVEGMAVGYPGKKNEESASS-KLHPRECRERGLTYQGVLHVDLCYQV---------GSGPIVRTQRRAGDCPVMVGSGRCHLQGLGSAQLCRKREEAGEMGGFFIVRGIERVIRLLQVPKRNYPHAISRATFKNRGQGYSTKGIIMRCARK--DQTTVTVTLHYISTGGSTLRFSVLKQEFLVPVVIILKALR-DTTDREIHERLLQGDRENTFLAAHVEVLLRE-SKRW-GLHSRMESLAFLGSTFRTLMSATSKTTDVELGKKVIDRFVLVHLTRHADKQECLLLMLRKLYALVQGRCQEDNQDALANHELLLPGHLFGMILKERVENWLEKVRQFIGRDARANASKTVMQVHDGKYVGKLLDRFGSV----VGQGMSTFLSTGNITSVTGLDLMQVSGFTIVAERINFLRYLSHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGAPCGLLNHLATTC-----RSPSS------IESLLVRLGVAPAGTG--AGDGSTSLPHNFLPVMLDGRVVGGGREATLARAAAELRRLKVAGGAGGLAGVWVDPTLEVGLVPVMAGGAGPYPGLFLNTGGARMCRPVLHLATGKAEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHSLTPHRIDNKMYKVLFPQAAIVQTRRHAEYQMDDYPQGTNAVVAVISYTGYDMEDAMILNKSSFERGFGHGSVLKTSVVDLKDVAGKLASPGEVARLRFCNTAPESTGAVRGRRRDDKL-HESLGWDGLPVVGSWVESGDPLYCVVDQLTGKVTVGKHKESEKACVETVRALGREGIDKTPLSRVSITLRFQRNPVVGDKFSSRHGQKGVMSILWPTEDMPFTEAGMSPDVIINPHAFPSRMTIGMLIESMAGKSGALHGTFQDATPFAFHEK--DRVIDHFGEQLRAAGFAYYGSEPLYSGVNGTVMHGDIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCASCGSLLSTSARRGTVATAGFSAAAAAVAAREGEGFDVSSGGGGIRCITCSVDPARAGGSSGGE-RVVAVAMPYVFRYLANELAGMGIKVTL 1208
            PSF    +P+K   E+ RSL  PHV+S+N+FL  GLA+ +K +PP  +++               +    +K W E + V    K +    S  KL+P ECR+R LTY G +    CY++         GS P  +  +  G  P+MVGS  CHL+GL   +L   REE  E GG+F++ G ER +R+LQVP+R++P AI RA++K RG  Y+  G+ +RC R   DQ+++T TLHY++TGG+TL+F V KQEFL+PV+++ +AL    TD EI+ R++QG+  NTFL    ++LL++ S R+  L++  E LAF+GS FR L      T+DV++G  +I+ ++L+H+  + DK ECLLL+LRKLYA   G C  DN D+L N ELL+PGHL   ++KE+ E  L+ +RQ +  + R + +    ++ +  +  +L+DR+ S     +G+ ++TFLSTGN+TS++GLD MQ +G+TIVAER+NFLR+ SHFRSVHRG FF  MKTTAVRKLLP+ WGFLCPVHTPDG PCGLL+HL+  C       P S       + LLV LGV P G G  +G+G TS  H   PV +DGRVVG     T    AA+LR LKV   +       +  TLEV L+P    G+ PY GLFL TG ARM RPVL  ATGK E IGPMEQ FM+IACL +D+R G+TTH+ELDPTNMLSL+A+LTPFSD NQSPRNMYQCQMGKQTMGTPAHSL P+R+DNK+Y++  PQA +VQT  H EY+MD+YP GTNAVVAV+SYTG+DMED++I+NK S+ERGFGH SV KT  +DL++ A   A      ++RF N             RD +L H  L  DGLP +GS+V+  DPLYCV++++  K  VGKHKESE+A V+++R  G E  D    ++ SITLRF RNPV+GDKFSSRHGQKGV+SILWP +DMPF+E+G+SPD+IINPHAFPSRMTIGM++ESMAGK+GALHG FQDATPF+FHE      +D+FGEQLRA+G+ YYGSEPLYSGV+G +M  D++IG+VYYQRLRHMVSDK QVRATGPVN LTRQPIKGRK  GG+RLGEMERD+LLSHG AFLL DRL+NCSD+H+A+ C  CG LL  + +R T+ ++G S   A   A+             +R I  S    +     G + +V  + +PYV+RYL NELA M IK+ +
Sbjct:   28 PSFRRGHLPNKDDVERLRSLTRPHVESFNYFLQSGLAKGIKAIPPAELDIVDLKRLREDRSKIDWDEITTVKFWFEDVRVVKSAKPSSAGRSDGKLYPTECRQRSLTYSGQILGKFCYEIIQRRNGVTKGSVPY-KMPKTFGVMPIMVGSNACHLEGLTPKELVDLREEDNEAGGYFLINGNERCVRMLQVPRRDHPLAIQRASYKKRGPTYTDLGVAIRCGRHTGDQSSITNTLHYLTTGGATLKFMVRKQEFLIPVILVARALTIGITDEEIYRRIVQGNESNTFLRTRAQLLLQDASVRFPNLNTPDECLAFIGSRFRRLSQKAESTSDVDIGHYIINEYILIHVPSYRDKLECLLLVLRKLYAFAAGDCGVDNADSLQNQELLMPGHLLSTMVKEKFEEVLQTIRQGMMIEMRKDFNVFSKRILESAFWSRLMDRYSSNASGGIGKRIATFLSTGNVTSISGLDQMQQAGYTIVAERLNFLRFNSHFRSVHRGSFFMEMKTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHLSLECIPITHPDPKSGNGLTDFDGLLVSLGVIPCGAGGQSGEGRTSSSHAHFPVCVDGRVVGSASPNTCKTIAAQLRSLKVQMPS------QIPRTLEVALIPASEAGS-PYAGLFLFTGTARMVRPVLQRATGKTEMIGPMEQAFMDIACLDEDIREGITTHQELDPTNMLSLIANLTPFSDQNQSPRNMYQCQMGKQTMGTPAHSL-PYRVDNKLYRLQNPQAPVVQTSIHGEYKMDEYPNGTNAVVAVLSYTGFDMEDSVIINKCSYERGFGHASVYKTIEIDLQEEAKMAAQSSTRPQVRFANKV----------NRDGQLVHNKLEIDGLPEIGSYVDKDDPLYCVLNEVENKDRVGKHKESERAYVQSIRMFGSEKEDSQE-NKASITLRFNRNPVIGDKFSSRHGQKGVLSILWPQQDMPFSESGISPDIIINPHAFPSRMTIGMMVESMAGKAGALHGIFQDATPFSFHESGDQTSVDYFGEQLRASGYNYYGSEPLYSGVSGCLMQADLYIGVVYYQRLRHMVSDKYQVRATGPVNPLTRQPIKGRKKGGGIRLGEMERDSLLSHGCAFLLQDRLLNCSDKHIAYACCRCGDLLMPTTKRSTILSSGQSREEAMNKAK-------------LRLICRSPSCLKHVSEDGNDDQVEPIILPYVYRYLVNELAAMNIKLKM 1217          
BLAST of mRNA_A-nodosum_M_contig874.3.7 vs. uniprot
Match: A0A2D4BW55_PYTIN (DNA-directed RNA polymerase subunit beta n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW55_PYTIN)

HSP 1 Score: 1195 bits (3091), Expect = 0.000e+0
Identity = 645/1197 (53.88%), Postives = 819/1197 (68.42%), Query Frame = 0
Query:   32 PVTGPSFTLNSIPSKATAEKRRSLVAPHVDSYNFFLGEGLAEAVKDMPPLVMEVGEGGPVLKIWVEGMAVGYPGKKNEESASSKLHPRECRERGLTYQGVLHVDLCYQ-VGSGPIVRTQRRAGDCPVMVGSGRCHLQGLGSAQLCRKREEAGEMGGFFIVRGIERVIRLLQVPKRNYPHAISRATFKNRGQGYSTKGIIMRCARKDQTTVTVTLHYISTGGSTLRFSVLKQEFLVPVVIILKALRDTTDREIHERLLQGDRENTFLAAHVEVLLRESKRWGLHSRMESLAFLGSTFRTLMSAT-SKTTDVELGKKVIDRFVLVHLTR----HADKQECLLLMLRKLYALVQGRCQEDNQDALANHELLLPGHLFGMILKERVENWLEKVRQFIGRDARANASKTVMQVHDGKYVGKLLDRFGSVVGQGMSTFLSTGNITSVTGLDLMQVSGFTIVAERINFLRYLSHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGAPCGLLNHLATTCRSPS--------------SIESLLVRLGVAPAGTGAGDGSTSLPHNFLPVMLDGRVVGGGREATLARAAAELRRLKVAGGAGGLAGVWVDPTLEVGLVPVMAGGAGPYPGLFLNTGGARMCRPVLHLATGKAEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHSLTPHRIDNKMYKVLFPQAAIVQTRRHAEYQMDDYPQGTNAVVAVISYTGYDMEDAMILNKSSFERGFGHGSVLKTSVVDLKDVAGKLASPGEVARLRFCNTAPESTGAVRGRRRDDKLHESLGWDGLPVVGSWVESGDPLYCVVDQLTGKVTVGKHKESEKACVETVRALGREGIDKTPLSRVSITLRFQRNPVVGDKFSSRHGQKGVMSILWPTEDMPFTEAGMSPDVIINPHAFPSRMTIGMLIESMAGKSGALHGTFQDATPFAFHEKDRVIDHFGEQLRAAGFAYYGSEPLYSGVNGTVMHGDIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCASCGSLLSTSARRGTVATAGFSAAAAAVAAREGEGFDVSSGGGGIRCITCSVDPARAGGSSGGERVVAVAMPYVFRYLANELAGMGIKVTL 1208
            P T PS    S P + T EK + LV+PHVDS+NFFL EGL  AV D+P +++EV      +  W+E   +G+P  +N+ +   KL P ECR+RG++Y   L V L     GS  + R QR  GD P+MV S RCHL GL  A+L + REEA EMGG+FI  G ER +RLLQ+P+R++  A+ R  F NRG  Y+   + M+C ++DQT VTVT+HY+  G +TLRF V KQEF++PV ++LKAL   TDREI+ER+L+G+ ENT+L+A VE++LRE+K++ ++SR E+LA+LG  FR +M       ++VE+G K++D ++ VH+ +     A K E + LMLRKLYA  +G  +EDN D++ NHELLLPGHL+GMILKE+++  L   R  I +  + +    VM   D  ++ ++ +R  ++ G  M+ FL+TGN+ S +GLDL+QV+G+TIVAE++N+ RY SHFRSVHRGQFFT MKTTAVRKLLP+SWGFLCPVHTPDG+PCGLLNHLA  C+  +               +   L  LG+ P  +G  DG+  +P+++LPVML+G+V+GG    +  R A  LR +K A          V   LEV L+    GG   +PGL+L +  ARM RPV  + T + EWIGPMEQ FM+IAC   D+RP  TTH E+ PTNMLSLVASLTPFSDYNQSPRNMYQCQM KQTMGTPAHS+  HR DNKMY++  PQ  IVQ  R  EYQ+D+YP GTNAVVAVISYTGYDMEDAMILNKS++ERGF H SV K  VVD+     K  S     +  F N    +T  +   + D         DG P +G  V  GDPL C VD+ TG+  + KHKESE A +E +  +G      +  ++  I LRF RNPV+GDKFSSRHGQKGVMSILWP E+MPFTE+GMSPD+IINPHAFPSRMTIGMLIESMA K+GAL G + DATPF F EKDRVID+FGEQL+  G+ Y GSEPLYSG++GTVMH DI+IG+VYYQRLRHMVSDKSQVRATG +N LTRQP+KGRK  GG+R GEMERD+LL+HG AFLL DRLMNCSD+H+A VC +CGSLLS + +R +V TAG    A A+ ++  + F          C  C            G+   AVAMPYVFRYLANELA M IK++L
Sbjct:   26 PATNPSSASRSCPLE-TNEKLQRLVSPHVDSFNFFLTEGLDLAVADIPKVLVEV-PNQQTMAFWIESAQIGFPTSENQITGERKLFPSECRQRGISYTAPLVVTLARSFAGSSNVERLQRVVGDIPIMVRSKRCHLNGLSPAELVQAREEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFANRGALYTELAVFMKCVKRDQTAVTVTMHYLEDGNATLRFGVRKQEFMIPVGLMLKALYPLTDREIYERVLRGEHENTYLSARVELILREAKKFSIYSRDEALAYLGKHFRHVMPYIYDSMSNVEVGSKMLDDYLFVHIPKGEKGRAQKVELVCLMLRKLYAFAKGDIREDNSDSVMNHELLLPGHLYGMILKEKLQEMLAATRSNILKAVQTSKKAVVM---DQAFMRQMWERTANI-GNAMTYFLNTGNLRSSSGLDLLQVAGYTIVAEKLNYYRYFSHFRSVHRGQFFTEMKTTAVRKLLPDSWGFLCPVHTPDGSPCGLLNHLAVECQLVTHPPHQADDYLQQELKLARFLTSLGMIPT-SGYADGALVVPYHYLPVMLNGKVLGGAPVESCKRIAETLRLVKSAESPAERQEHGVVENLEVCLILPSLGGC--FPGLYLASDAARMTRPVKQMDTERIEWIGPMEQVFMDIACTQSDIRPA-TTHMEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQMAKQTMGTPAHSIV-HRTDNKMYRIQTPQIPIVQNERLREYQLDEYPLGTNAVVAVISYTGYDMEDAMILNKSAYERGFAHASVYKQIVVDIAGDGRKGGSSQN--KQXFSNVKANATNELYSAKLDR--------DGFPHIGQVVNQGDPLACWVDETTGEHHMQKHKESEPAIIEQINLIGSNS-QSSEFTKAGIKLRFCRNPVIGDKFSSRHGQKGVMSILWPQENMPFTESGMSPDIIINPHAFPSRMTIGMLIESMAAKTGALKGKYMDATPFQFSEKDRVIDYFGEQLKEXGYNYMGSEPLYSGISGTVMHADIYIGVVYYQRLRHMVSDKSQVRATGKMNALTRQPVKGRKKGGGIRFGEMERDSLLAHGCAFLLQDRLMNCSDKHIATVCTTCGSLLSNATQRASVETAGQGDVAIALKSKT-QWF----------CTVCQ----------SGDGCHAVAMPYVFRYLANELAAMNIKMSL 1179          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig874.3.7 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGZ7_ECTSI0.000e+065.89DNA-directed RNA polymerase (Fragment) n=1 Tax=Ect... [more]
A0A835YVF9_9STRA0.000e+060.99DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
W7TET2_9STRA0.000e+057.65DNA-directed RNA polymerase subunit beta n=2 Tax=M... [more]
A0A7S3V7B4_9STRA0.000e+053.87DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
A0A6U3PLE0_9STRA0.000e+053.14DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
A0A7S4JAV2_9STRA0.000e+052.60DNA-directed RNA polymerase subunit beta n=1 Tax=O... [more]
A0A5D6YCW8_9STRA0.000e+055.22DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A8K1FE15_PYTOL0.000e+053.97Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1E7FFI8_9STRA0.000e+052.33DNA-directed RNA polymerase subunit beta n=1 Tax=F... [more]
A0A2D4BW55_PYTIN0.000e+053.88DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014724RNA polymerase Rpb2, OB-foldGENE3D2.40.50.150coord: 730..923
e-value: 1.2E-137
score: 460.9
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 230..392
e-value: 1.2E-18
score: 67.5
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 699..1077
e-value: 8.7E-109
score: 364.1
IPR009674DNA-directed RNA polymerase I subunit RPA2, domain 4PFAMPF06883RNA_pol_Rpa2_4coord: 585..650
e-value: 6.9E-13
score: 48.3
NoneNo IPR availableGENE3D3.90.1800.10RNA polymerase alpha subunit dimerisation domaincoord: 1065..1210
e-value: 1.2E-43
score: 150.7
NoneNo IPR availableGENE3D3.90.1100.10coord: 49..206
e-value: 2.8E-15
score: 58.3
coord: 381..579
e-value: 6.0E-34
score: 119.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..44
NoneNo IPR availablePANTHERPTHR20856:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2coord: 49..1209
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 52..1210
IPR037034RNA polymerase Rpb2, domain 2 superfamilyGENE3D3.90.1110.10RNA polymerase Rpb2, domain 2coord: 207..380
e-value: 1.4E-60
score: 206.3
IPR007641RNA polymerase Rpb2, domain 7PFAMPF04560RNA_pol_Rpb2_7coord: 1080..1210
e-value: 8.9E-17
score: 61.3
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 700..1064
e-value: 1.2E-137
score: 460.9
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 480..543
e-value: 4.8E-30
score: 103.5
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 55..425
e-value: 3.2E-29
score: 102.6
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 49..1209
IPR015712DNA-directed RNA polymerase, subunit 2CDDcd00653RNA_pol_B_RPB2coord: 55..1209
e-value: 0.0
score: 938.145
IPR007121RNA polymerase, beta subunit, conserved sitePROSITEPS01166RNA_POL_BETAcoord: 927..939

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig874contigA-nodosum_M_contig874:2262..35072 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig874.3.7mRNA_A-nodosum_M_contig874.3.7Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig874 2198..35501 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig874.3.7 ID=prot_A-nodosum_M_contig874.3.7|Name=mRNA_A-nodosum_M_contig874.3.7|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1212bp
MSSDVSSKVSKAGIVDGALRQQRVTKGSSRQPVTGPSFTLNSIPSKATAE
KRRSLVAPHVDSYNFFLGEGLAEAVKDMPPLVMEVGEGGPVLKIWVEGMA
VGYPGKKNEESASSKLHPRECRERGLTYQGVLHVDLCYQVGSGPIVRTQR
RAGDCPVMVGSGRCHLQGLGSAQLCRKREEAGEMGGFFIVRGIERVIRLL
QVPKRNYPHAISRATFKNRGQGYSTKGIIMRCARKDQTTVTVTLHYISTG
GSTLRFSVLKQEFLVPVVIILKALRDTTDREIHERLLQGDRENTFLAAHV
EVLLRESKRWGLHSRMESLAFLGSTFRTLMSATSKTTDVELGKKVIDRFV
LVHLTRHADKQECLLLMLRKLYALVQGRCQEDNQDALANHELLLPGHLFG
MILKERVENWLEKVRQFIGRDARANASKTVMQVHDGKYVGKLLDRFGSVV
GQGMSTFLSTGNITSVTGLDLMQVSGFTIVAERINFLRYLSHFRSVHRGQ
FFTTMKTTAVRKLLPESWGFLCPVHTPDGAPCGLLNHLATTCRSPSSIES
LLVRLGVAPAGTGAGDGSTSLPHNFLPVMLDGRVVGGGREATLARAAAEL
RRLKVAGGAGGLAGVWVDPTLEVGLVPVMAGGAGPYPGLFLNTGGARMCR
PVLHLATGKAEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVA
SLTPFSDYNQSPRNMYQCQMGKQTMGTPAHSLTPHRIDNKMYKVLFPQAA
IVQTRRHAEYQMDDYPQGTNAVVAVISYTGYDMEDAMILNKSSFERGFGH
GSVLKTSVVDLKDVAGKLASPGEVARLRFCNTAPESTGAVRGRRRDDKLH
ESLGWDGLPVVGSWVESGDPLYCVVDQLTGKVTVGKHKESEKACVETVRA
LGREGIDKTPLSRVSITLRFQRNPVVGDKFSSRHGQKGVMSILWPTEDMP
FTEAGMSPDVIINPHAFPSRMTIGMLIESMAGKSGALHGTFQDATPFAFH
EKDRVIDHFGEQLRAAGFAYYGSEPLYSGVNGTVMHGDIFIGLVYYQRLR
HMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFL
LHDRLMNCSDRHVAHVCASCGSLLSTSARRGTVATAGFSAAAAAVAAREG
EGFDVSSGGGGIRCITCSVDPARAGGSSGGERVVAVAMPYVFRYLANELA
GMGIKVTLKTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014724RNA_pol_RPB2_OB-fold
IPR007642RNA_pol_Rpb2_2
IPR007120DNA-dir_RNAP_su2_dom
IPR009674Rpa2_dom_4
IPR037034RNA_pol_Rpb2_2_sf
IPR007641RNA_pol_Rpb2_7
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR007645RNA_pol_Rpb2_3
IPR007644RNA_pol_bsu_protrusion
IPR015712DNA-dir_RNA_pol_su2
IPR007121RNA_pol_bsu_CS