prot_A-nodosum_M_contig8713.3.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8713.3.1
Unique Nameprot_A-nodosum_M_contig8713.3.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length212
Homology
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BLAST of mRNA_A-nodosum_M_contig8713.3.1 vs. uniprot
Match: A0A6H5LHQ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHQ7_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 2.200e-32
Identity = 75/198 (37.88%), Postives = 103/198 (52.02%), Query Frame = 0 
Query:   15 PEVIIGNTPRRANELEEGQQGTTGTATKIVHTFISSQAHLLILESTPYLLRSANWMDDLSPLLSTTGCCWEAVELSAQQVGIPSTKRKMFVACVRNHPNAKKRLARWKARLTDMRVRPVKLGEFIGREGSYFLSRKKGEQKIFSFEDPIISLTRGHILGEKPPPNGYQPHPSDVDSLEDAQELHLTDFAKIATGFEDY 212
            PEV++GN  RR +    G   T  T   IV TF++S+A LL++E      R+  W D L P L +  C  E   L A  VG+P+ K+++FV  V+  P                       G F+GREG YFL R  G++ +FSF  P I+LT GHI+G + PP  YQPHP+D   +  AQ+L   DF K+ T   D+
Sbjct:  720 PEVLVGNACRRYDPERLGNTATHQTEA-IVDTFLASRAQLLVVECPAGFARTTAWRDSLRPRLESARCSVEDALLHATDVGVPTGKQRVFVIAVKPRP-----------------------GGFLGREGCYFLKRLPGDKGVFSFAKPTITLTHGHIMGRRLPPEDYQPHPTDDGPVASAQDLSWGDFVKLTTTQGDF 893
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8713.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LHQ7_9PHAE2.200e-3237.88Reverse transcriptase domain-containing protein (F... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8713contigA-nodosum_M_contig8713:9118..9753 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8713.3.1mRNA_A-nodosum_M_contig8713.3.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8713 9118..9753 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8713.3.1 ID=prot_A-nodosum_M_contig8713.3.1|Name=mRNA_A-nodosum_M_contig8713.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=212bp
LGDPEYGFWVKSQEPEVIIGNTPRRANELEEGQQGTTGTATKIVHTFISS
QAHLLILESTPYLLRSANWMDDLSPLLSTTGCCWEAVELSAQQVGIPSTK
RKMFVACVRNHPNAKKRLARWKARLTDMRVRPVKLGEFIGREGSYFLSRK
KGEQKIFSFEDPIISLTRGHILGEKPPPNGYQPHPSDVDSLEDAQELHLT
DFAKIATGFEDY
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