prot_A-nodosum_M_contig8703.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig8703.1.1
Unique Name	prot_A-nodosum_M_contig8703.1.1
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	141

Homology

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BLAST of mRNA_A-nodosum_M_contig8703.1.1 vs. uniprot
Match: D8LTD5_ECTSI (Polyadenylate-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 9.750e-83
Identity = 130/137 (94.89%), Postives = 134/137 (97.81%), Query Frame = 0

Query:    4 QVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRITWSQRDPSLRRSGVGNIFVKNLDETIDNRALYDTFSLFGNILSCKVATNENGESKGYGYVHYETGVSANMAIAKINGMLIAGKQV 140
            QVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRI WSQRDPSLRRSGVGNIFVKNLDET+DN+ALYDTFSLFGNILSCKVAT++ GESKGYGYVHYE GVSANMAIAKINGMLIAGKQV
Sbjct:   64 QVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 200

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BLAST of mRNA_A-nodosum_M_contig8703.1.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA)

HSP 1 Score: 246 bits (628), Expect = 1.170e-75
Identity = 118/137 (86.13%), Postives = 127/137 (92.70%), Query Frame = 0

Query:    4 QVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRITWSQRDPSLRRSGVGNIFVKNLDETIDNRALYDTFSLFGNILSCKVATNENGESKGYGYVHYETGVSANMAIAKINGMLIAGKQV 140
            QVGPVASIRVCRDT+TRRSLGYAYVNFHNVADAERALDTMNFT IKD  CRI WSQRDPS+RRSGVGN+FVKNLDETIDN+ALYDTFSLFGNILSCKVAT++ G SKGYGYVHYET  SAN AIAKI+GM++ GKQV
Sbjct:   85 QVGPVASIRVCRDTITRRSLGYAYVNFHNVADAERALDTMNFTLIKDNPCRIMWSQRDPSMRRSGVGNVFVKNLDETIDNKALYDTFSLFGNILSCKVATDDAGNSKGYGYVHYETAESANEAIAKIDGMVVGGKQV 221

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BLAST of mRNA_A-nodosum_M_contig8703.1.1 vs. uniprot
Match: A0A6A5AH64_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AH64_9STRA)

HSP 1 Score: 228 bits (582), Expect = 5.600e-74
Identity = 111/136 (81.62%), Postives = 122/136 (89.71%), Query Frame = 0

Query:    5 VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRITWSQRDPSLRRSGVGNIFVKNLDETIDNRALYDTFSLFGNILSCKVATNENGESKGYGYVHYETGVSANMAIAKINGMLIAGKQV 140
            VGPVASIRVCRD VTRRSLGYAYVNFHNV+DAERALDTMN+T+IK   CRI WSQRDP+LR+SGVGNIFVKNLD +IDN+ALYDTFSLFGNILSCKVA + NG SKGYGYVHYET  +A +AI KINGMLIAG +V
Sbjct:   58 VGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALDTMNYTSIKSVPCRIMWSQRDPTLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAYDLNGNSKGYGYVHYETAEAAYLAIEKINGMLIAGTEV 193

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BLAST of mRNA_A-nodosum_M_contig8703.1.1 vs. uniprot
Match: A0A2D4BDJ5_PYTIN (Polyadenylate-binding protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDJ5_PYTIN)

HSP 1 Score: 235 bits (600), Expect = 6.800e-72
Identity = 116/136 (85.29%), Postives = 123/136 (90.44%), Query Frame = 0

Query:    5 VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRITWSQRDPSLRRSGVGNIFVKNLDETIDNRALYDTFSLFGNILSCKVATNENGESKGYGYVHYETGVSANMAIAKINGMLIAGKQV 140
            VGPVASIRVCRD VTRRSLGYAYVNFHNVADAERALDTMNFT+IK   CRI WSQRDPSLR+SGVGNIFVKNLD +IDN+ALYDTFSLFGNILSCKVA + NG SKGYGYVHYET  +AN AIAKINGMLIAG +V
Sbjct:   51 VGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDINGNSKGYGYVHYETAEAANEAIAKINGMLIAGTEV 186

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BLAST of mRNA_A-nodosum_M_contig8703.1.1 vs. uniprot
Match: A0A7R9WA81_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WA81_9STRA)

HSP 1 Score: 223 bits (569), Expect = 1.070e-70
Identity = 109/138 (78.99%), Postives = 123/138 (89.13%), Query Frame = 0

Query:    5 VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRITWSQRDPSLRRSGVGNIFVKNLDETIDNRALYDTFSLFGNILSCKVATN-ENGESKGYGYVHYETGVSANMAIAKINGMLIAGKQVQ 141
            VGPV+SIRVCRD VTRRSLGYAYVNFH VADAERALDTMNFTTIKD+ CRI WSQRDPS+RRS VGNIFVKNL E+IDN+ LYDTFSLFGNILSCKV T+ ++G+SKGYGYVHYET  +A  AI K++GMLI G++VQ
Sbjct:   80 VGPVSSIRVCRDAVTRRSLGYAYVNFHQVADAERALDTMNFTTIKDRPCRIMWSQRDPSIRRSNVGNIFVKNLHESIDNKQLYDTFSLFGNILSCKVVTDRDSGKSKGYGYVHYETAEAAQAAIEKLDGMLIDGQEVQ 217

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BLAST of mRNA_A-nodosum_M_contig8703.1.1 vs. uniprot
Match: A0A6G0WN78_9STRA (Polyadenylate-binding protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0WN78_9STRA)

HSP 1 Score: 230 bits (586), Expect = 1.830e-69
Identity = 113/136 (83.09%), Postives = 122/136 (89.71%), Query Frame = 0

Query:    5 VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRITWSQRDPSLRRSGVGNIFVKNLDETIDNRALYDTFSLFGNILSCKVATNENGESKGYGYVHYETGVSANMAIAKINGMLIAGKQV 140
            VGPVASIRVCRD VTRRSLGYAYVNFHNV+DAERALDTMN+T+IK   CRI WSQRDPSLR+SGVGNIFVKNLD +IDN+ALYDTFSLFGNILSCKVA + NG SKGYGYVHYET  +A  AIAKINGMLIAG +V
Sbjct:   97 VGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALDTMNYTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDINGNSKGYGYVHYETAEAAYEAIAKINGMLIAGTEV 232

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BLAST of mRNA_A-nodosum_M_contig8703.1.1 vs. uniprot
Match: K3X8Z0_GLOUD (Polyadenylate-binding protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X8Z0_GLOUD)

HSP 1 Score: 229 bits (583), Expect = 2.320e-69
Identity = 115/137 (83.94%), Postives = 122/137 (89.05%), Query Frame = 0

Query:    5 VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRITWSQRDPSLRRSGVGNIFVKNLDETIDNRALYDTFSLFGNILSCKVAT-NENGESKGYGYVHYETGVSANMAIAKINGMLIAGKQV 140
            VGPVASIRVCRD VTRRSLGYAYVNFHNVADAERALDTMNFT+IK   CRI WSQRDPSLR+SGVGNIFVKNLD +IDN+ALYDTFSLFGNILSCKVA  N  G SKGYGYVHYET  +A+ AIAKINGMLIAG +V
Sbjct:   55 VGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDNTTGASKGYGYVHYETAEAAHEAIAKINGMLIAGTEV 191

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BLAST of mRNA_A-nodosum_M_contig8703.1.1 vs. uniprot
Match: A0A0J7YQW6_BETVV (Uncharacterized protein (Fragment) n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J7YQW6_BETVV)

HSP 1 Score: 216 bits (551), Expect = 2.390e-69
Identity = 103/137 (75.18%), Postives = 118/137 (86.13%), Query Frame = 0

Query:    5 VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRITWSQRDPSLRRSGVGNIFVKNLDETIDNRALYDTFSLFGNILSCKVATNENGESKGYGYVHYETGVSANMAIAKINGMLIAGKQVQ 141
            VGPVASIRVCRD +TRRSLGY YVN+HNV DAERALDTMNFT I  + CRI WSQRDP+LR+SGVGNIFVKNLD TID++ALYDTFS+FGNILSCKVA + +GES GYG+VHYET  SA  AI K++GM+I+G  VQ
Sbjct:   18 VGPVASIRVCRDAITRRSLGYGYVNYHNVVDAERALDTMNFTNIGSKPCRIMWSQRDPALRKSGVGNIFVKNLDPTIDHKALYDTFSMFGNILSCKVAMSPSGESLGYGFVHYETEESATKAIEKVDGMVISGTHVQ 154

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BLAST of mRNA_A-nodosum_M_contig8703.1.1 vs. uniprot
Match: A0A6A3LR95_9STRA (Polyadenylate-binding protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LR95_9STRA)

HSP 1 Score: 229 bits (585), Expect = 2.610e-69
Identity = 115/137 (83.94%), Postives = 122/137 (89.05%), Query Frame = 0

Query:    5 VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRITWSQRDPSLRRSGVGNIFVKNLDETIDNRALYDTFSLFGNILSCKVATNE-NGESKGYGYVHYETGVSANMAIAKINGMLIAGKQV 140
            VGPVASIRVCRD VTRRSLGYAYVNFHNVADAERALDTMNFT+IK   CRI WSQRDPSLR+SGVGNIFVKNLD +IDN+ALYDTFSLFGNILSCKVA +  NG SKGYGYVHYET  +A  AIAKINGMLIAG +V
Sbjct:  101 VGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTNGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEV 237

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BLAST of mRNA_A-nodosum_M_contig8703.1.1 vs. uniprot
Match: A0A067BXY4_SAPPC (Polyadenylate-binding protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BXY4_SAPPC)

HSP 1 Score: 228 bits (582), Expect = 2.740e-69
Identity = 114/137 (83.21%), Postives = 123/137 (89.78%), Query Frame = 0

Query:    5 VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRITWSQRDPSLRRSGVGNIFVKNLDETIDNRALYDTFSLFGNILSCKVAT-NENGESKGYGYVHYETGVSANMAIAKINGMLIAGKQV 140
            VGPVASIRVCRD VTRRSLGYAYVNFHNV+DAERALDTMN+T+IK   CRI WSQRDPSLR+SGVGNIFVKNLD +IDN+ALYDTFSLFGNILSCKVA  N +G SKGYGYVHYET  +AN AIAKINGMLIAG +V
Sbjct:   54 VGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALDTMNYTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDVSIDNKALYDTFSLFGNILSCKVAIDNTSGGSKGYGYVHYETAEAANEAIAKINGMLIAGSEV 190

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig8703.1.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig8703.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LTD5_ECTSI	9.750e-83	94.89	Polyadenylate-binding protein n=2 Tax=Ectocarpus T...	[more]
A0A835YVH9_9STRA	1.170e-75	86.13	Polyadenylate-binding protein n=1 Tax=Tribonema mi...	[more]
A0A6A5AH64_9STRA	5.600e-74	81.62	Uncharacterized protein (Fragment) n=1 Tax=Aphanom...	[more]
A0A2D4BDJ5_PYTIN	6.800e-72	85.29	Polyadenylate-binding protein n=2 Tax=Pythium TaxI...	[more]
A0A7R9WA81_9STRA	1.070e-70	78.99	Hypothetical protein (Fragment) n=1 Tax=Pseudictyo...	[more]
A0A6G0WN78_9STRA	1.830e-69	83.09	Polyadenylate-binding protein n=2 Tax=Aphanomyces ...	[more]
K3X8Z0_GLOUD	2.320e-69	83.94	Polyadenylate-binding protein n=2 Tax=Pythiaceae T...	[more]
A0A0J7YQW6_BETVV	2.390e-69	75.18	Uncharacterized protein (Fragment) n=2 Tax=Beta vu...	[more]
A0A6A3LR95_9STRA	2.610e-69	83.94	Polyadenylate-binding protein n=5 Tax=Phytophthora...	[more]
A0A067BXY4_SAPPC	2.740e-69	83.21	Polyadenylate-binding protein n=4 Tax=Saprolegniac...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 3..56 e-value: 0.39 score: 10.2 coord: 71..141 e-value: 5.0E-16 score: 69.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 4..53 e-value: 8.7E-12 score: 44.7 coord: 72..140 e-value: 4.5E-18 score: 64.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 70..141 score: 16.056692
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..60 score: 10.598964
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..71 e-value: 1.8E-15 score: 59.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 72..141 e-value: 1.4E-19 score: 71.7
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 6..138
None	No IPR available	PANTHER	PTHR24012:SF805	POLYADENYLATE-BINDING PROTEIN	coord: 6..138
None	No IPR available	CDD	cd12378	RRM1_I_PABPs	coord: 4..62 e-value: 2.07155E-38 score: 123.028
IPR045305	PABP, RNA recognition motif 2	CDD	cd12379	RRM2_I_PABPs	coord: 68..140 e-value: 4.61415E-49 score: 150.009
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..140

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig8703	contig	A-nodosum_M_contig8703:12801..14731 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig8703.1.1	mRNA_A-nodosum_M_contig8703.1.1	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig8703 12801..14731 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig8703.1.1 ID=prot_A-nodosum_M_contig8703.1.1|Name=mRNA_A-nodosum_M_contig8703.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=141bp
MRWQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKD
QACRITWSQRDPSLRRSGVGNIFVKNLDETIDNRALYDTFSLFGNILSCK
VATNENGESKGYGYVHYETGVSANMAIAKINGMLIAGKQVQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR045305	RRM2_I_PABPs
IPR035979	RBD_domain_sf