prot_A-nodosum_M_contig87.51.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig87.51.1
Unique Nameprot_A-nodosum_M_contig87.51.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length560
Homology
BLAST of mRNA_A-nodosum_M_contig87.51.1 vs. uniprot
Match: A0A6H5KT20_9PHAE (FtsJ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT20_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 3.330e-62
Identity = 219/543 (40.33%), Postives = 259/543 (47.70%), Query Frame = 0
Query:   80 RPG-GKRGVRGGEAVGRRVSKGGSSGLWMKRHLKDPYVSAATESGAPSRAAYKLVEINDKHGVLAPGDR-----------VVDLGAPRRGA----GRWSLHALPSR---RVSGTEGLPPREVAGVVVAGGAAPALGLARHRVCPRPSRSTAAAVGAKRKGSGRREPSWWRWIYSKWSRCPACRRFEETSGMQASRPRSSRDWRPSLSHQASPRSSGADGETAPPDPSGTQTSPDNAGDKRSSASSAAFLLRGTSSSEHLLPRPTEPSVDSLESLLRHGAGN--PSSNPKATXXXXXXXXXXXXAAAGRKSSDAASWAPGAEARSAEAADGGGLAPAFGARGRLRRANVVLSDMAPSFTGDRDTDQGRAAGLVLDALAACVGDEGARR----RRSSSNSGQRAK---GFGEGRGTASARQEFERMEENAE-EEEHGDEVDDHAGG-----------------------------------GVEGPGPGLLARGGTFLGKFFAGRDEREVKLEASRLFRKVRMVKPPASRMRSSEMYVLATGFLL 558
            RPG GK G   G A G R +KGGSSGLWM+RHLKDPYVSAA E+GAPSRAA+KLVEIND+HGVL+ GDR           ++D+ A   G     G +    + SR    +S  E L P         G   P L     RV P       AA   K +   RR+ +                +   + G                         G D  +A           D  G++       AFLLRGTS+S  LLPRP +PS DSLE L   G GN  P++     XXXXXXXXXXXX                                         RA+VVLSDMAPSF+GDRDTDQGR A LVLDALAAC+GDE +RR    R+ +   G+ +    G GEG G      +    E+ A    E G+EV    GG                                   G+EG GPGLLARGGTFLGKFFAGRDEREVK EA RLF +V++VKPPASR  S EMY+LATGFLL
Sbjct:   73 RPGAGKNGA--GGAAGGRATKGGSSGLWMRRHLKDPYVSAAVEAGAPSRAAFKLVEINDRHGVLSAGDRRGGEAVVVAVDLLDMEADLPGVQAIRGDFRDAEVESRIFSLLSARERLQPAP-------GNERPKLD--EQRVLPLQPPEVTAAESGKERADLRRDDT----------------KLRSSDGY------------------------GVDDGSAS----------DGVGEED------AFLLRGTSASRTLLPRPEQPSTDSLEHLFLAGGGNRDPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------XXXXXXXXXXXXTRASVVLSDMAPSFSGDRDTDQGRVAALVLDALAACLGDEASRRSEPPRKGAGERGRNSVDPLGGGEGSGAVRLGGDVAGGEKAARMRREEGNEVGATTGGTLSSDVGVSSNGGTAAETPVSSSRKHAVGGRDEWGGIEGEGPGLLARGGTFLGKFFAGRDEREVKEEAERLFERVKVVKPPASRSGSGEMYLLATGFLL 535          
BLAST of mRNA_A-nodosum_M_contig87.51.1 vs. uniprot
Match: A0A6P3F5C9_OCTDE (rRNA methyltransferase 2, mitochondrial n=6 Tax=Hystricomorpha TaxID=33550 RepID=A0A6P3F5C9_OCTDE)

HSP 1 Score: 77.8 bits (190), Expect = 2.030e-12
Identity = 45/95 (47.37%), Postives = 56/95 (58.95%), Query Frame = 0
Query:   92 AVGRRVSKGGSSGLWMKRHLKDPYVSAATESGAPSRAAYKLVEINDKHGVLAPGDRVVDLGAPRRGAGRWSLHALPSRRVSGTE-GLPPREVAGV 185
            A G    + G+  LW+ RHLKDPYV AA       R+A+KL+EIN KHG+L PG RV+D GA     G WS  A+P    +GT+ G P   V GV
Sbjct:   20 AAGHYKGRTGAEHLWLMRHLKDPYVKAAKVECYRCRSAFKLLEINKKHGILRPGLRVLDCGAA---PGAWSQVAVPRVNATGTDPGSPVGFVLGV 111          
BLAST of mRNA_A-nodosum_M_contig87.51.1 vs. uniprot
Match: A0A4R0PBA8_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Oricola cellulosilytica TaxID=1429082 RepID=A0A4R0PBA8_9HYPH)

HSP 1 Score: 77.4 bits (189), Expect = 2.360e-12
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 0
Query:   88 RGGEAVGRRVSKG----GSSGLWMKRHLKDPYVSAATESGAPSRAAYKLVEINDKHGVLAPGDRVVDLGA 153
            RGG ++ +RV KG     SS  W++R + DPYV  A   G  SRAAYKL+EI+D+HG+L  GDRV+DLGA
Sbjct:   15 RGGRSINQRVKKGRGLKNSSRRWIERQINDPYVQRAKAEGMRSRAAYKLIEIDDRHGLLKKGDRVIDLGA 84          
BLAST of mRNA_A-nodosum_M_contig87.51.1 vs. uniprot
Match: A0A7C9GD67_9PROT (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C9GD67_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 2.800e-12
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 0
Query:   99 KGGSSGLWMKRHLKDPYVSAATESGAPSRAAYKLVEINDKHGVLAPGDRVVDLGAPRRGAGRWSLHALPSRRVSGTEGLPPREVA 183
            +G SS  W+KR L+DPYV AA   G  SRAAYKL+E++D+   L PG RVVDLGA     G WSL A    R + ++G   R VA
Sbjct:   34 RGTSSANWLKRQLRDPYVLAAQRQGLRSRAAYKLMELDDRFHFLKPGARVVDLGAA---PGGWSLVAAERVRATASDGKAGRVVA 115          
BLAST of mRNA_A-nodosum_M_contig87.51.1 vs. uniprot
Match: A0A6N1VDJ7_9HYPH (Ribosomal RNA large subunit methyltransferase E n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A6N1VDJ7_9HYPH)

HSP 1 Score: 77.0 bits (188), Expect = 3.720e-12
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 0
Query:   88 RGGEAVGRRVSKG----GSSGLWMKRHLKDPYVSAATESGAPSRAAYKLVEINDKHGVLAPGDRVVDLGA 153
            RGG ++ +RV KG     SS  W++R L DPYV  A   G  SRAAYKL+EI+DKH +L  GDRV+DLGA
Sbjct:   15 RGGRSINQRVKKGRGLKNSSRRWIERQLNDPYVQRAKAEGMRSRAAYKLIEIDDKHHILKKGDRVIDLGA 84          
BLAST of mRNA_A-nodosum_M_contig87.51.1 vs. uniprot
Match: A0A840AL68_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Kaistia hirudinis TaxID=1293440 RepID=A0A840AL68_9HYPH)

HSP 1 Score: 76.6 bits (187), Expect = 5.460e-12
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 0
Query:  102 SSGLWMKRHLKDPYVSAATESGAPSRAAYKLVEINDKHGVLAPGDRVVDLGAPRRGAGRWSLHALPSRRVSGTEGLPPREVA 183
            SS  W++R L DPYV+ +   G  SRAAYKL+EI+DKH +LAPG RVVDLGA     G WS  A+  +RV  T+   PR VA
Sbjct:   26 SSQRWLERQLNDPYVARSKREGYRSRAAYKLIEIDDKHHILAPGKRVVDLGAA---PGGWSQVAV--QRVGSTDA-DPRVVA 101          
BLAST of mRNA_A-nodosum_M_contig87.51.1 vs. uniprot
Match: UPI0013D4039B (RlmE family RNA methyltransferase n=2 Tax=Chelativorans TaxID=449972 RepID=UPI0013D4039B)

HSP 1 Score: 76.3 bits (186), Expect = 5.750e-12
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 0
Query:  102 SSGLWMKRHLKDPYVSAATESGAPSRAAYKLVEINDKHGVLAPGDRVVDLGA 153
            SS  W++RHL DPYV  AT+ G  SRAAYKL EI+DKH +LAPG +V+DLGA
Sbjct:   30 SSRRWLERHLNDPYVQRATQEGMRSRAAYKLTEIDDKHHILAPGMKVIDLGA 81          
BLAST of mRNA_A-nodosum_M_contig87.51.1 vs. uniprot
Match: UPI001CC0ADCE (RlmE family RNA methyltransferase n=1 Tax=Oricola indica TaxID=2872591 RepID=UPI001CC0ADCE)

HSP 1 Score: 76.3 bits (186), Expect = 6.810e-12
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 0
Query:   90 GEAVGRRVSKG----GSSGLWMKRHLKDPYVSAATESGAPSRAAYKLVEINDKHGVLAPGDRVVDLGAPRRGAGRWSLHALPS 168
            G ++ +RV KG     SS  W++R + DPYV  A   G  SRAAYKL+EI+DKH +LA GDRV+DLGA   G  + + H + S
Sbjct:   17 GRSINQRVKKGRGLKNSSRRWIERQINDPYVQRAKAEGMRSRAAYKLIEIDDKHKILARGDRVIDLGAAPGGWCQVAAHRVGS 99          
BLAST of mRNA_A-nodosum_M_contig87.51.1 vs. uniprot
Match: UPI0016689FEC (RlmE family RNA methyltransferase n=1 Tax=Nitratireductor aestuarii TaxID=1735103 RepID=UPI0016689FEC)

HSP 1 Score: 75.9 bits (185), Expect = 8.330e-12
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 0
Query:  102 SSGLWMKRHLKDPYVSAATESGAPSRAAYKLVEINDKHGVLAPGDRVVDLGAPRRGAGRWSLHALPSR----RVSGTEGLPPREVAGVVV 187
            SS  W++RHL DPYV  A   G  SRAAYKL+EIN+K+ +LAPG +VVDLGA   G  + +   + S+     V G + LP   +AG ++
Sbjct:   25 SSRRWLERHLNDPYVHRANAEGMRSRAAYKLIEINEKYKILAPGMKVVDLGAAPGGWCQIAAQVVKSKPESPSVVGIDYLPVDPMAGAII 114          
BLAST of mRNA_A-nodosum_M_contig87.51.1 vs. uniprot
Match: A0A7W6D0J4_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Hansschlegelia beijingensis TaxID=1133344 RepID=A0A7W6D0J4_9HYPH)

HSP 1 Score: 75.9 bits (185), Expect = 9.050e-12
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 0
Query:  102 SSGLWMKRHLKDPYVSAATESGAPSRAAYKLVEINDKHGVLAPGDRVVDLGAPRRGAGRWSLHALPSRRVSGTEG 176
            +S LW+ R L DPYV AA   G  SRAA+KL+EI+DKH  L PG +VVDLGA     G WS   + ++R+  TEG
Sbjct:   35 ASTLWLSRQLNDPYVQAARREGYRSRAAFKLIEIDDKHHFLKPGQKVVDLGAA---PGGWSQ--IAAQRIGATEG 104          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig87.51.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT20_9PHAE3.330e-6240.33FtsJ domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6P3F5C9_OCTDE2.030e-1247.37rRNA methyltransferase 2, mitochondrial n=6 Tax=Hy... [more]
A0A4R0PBA8_9HYPH2.360e-1254.29Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A7C9GD67_9PROT2.800e-1250.59Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A6N1VDJ7_9HYPH3.720e-1255.71Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A840AL68_9HYPH5.460e-1253.66Ribosomal RNA large subunit methyltransferase E n=... [more]
UPI0013D4039B5.750e-1265.38RlmE family RNA methyltransferase n=2 Tax=Chelativ... [more]
UPI001CC0ADCE6.810e-1248.19RlmE family RNA methyltransferase n=1 Tax=Oricola ... [more]
UPI0016689FEC8.330e-1245.56RlmE family RNA methyltransferase n=1 Tax=Nitratir... [more]
A0A7W6D0J4_9HYPH9.050e-1252.00Ribosomal RNA large subunit methyltransferase E n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 465..485
NoneNo IPR availablePIRSRPIRSR005461-1PIRSR005461-1coord: 504..556
e-value: 5.1E-12
score: 43.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 444..501
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 250..403
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 284..321
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 337..351
NoneNo IPR availablePANTHERPTHR10920RIBOSOMAL RNA METHYLTRANSFERASEcoord: 402..557
NoneNo IPR availablePANTHERPTHR10920:SF18RRNA METHYLTRANSFERASE 2, MITOCHONDRIALcoord: 402..557
NoneNo IPR availablePANTHERPTHR10920:SF18RRNA METHYLTRANSFERASE 2, MITOCHONDRIALcoord: 108..166
NoneNo IPR availablePANTHERPTHR10920RIBOSOMAL RNA METHYLTRANSFERASEcoord: 108..166
IPR002877Ribosomal RNA methyltransferase, FtsJ domainPFAMPF01728FtsJcoord: 393..556
e-value: 2.8E-15
score: 56.9
coord: 126..154
e-value: 3.4E-5
score: 24.0
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 366..558
e-value: 6.7E-19
score: 70.4
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 100..180
e-value: 1.7E-9
score: 39.3
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilySUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 102..167

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig87contigA-nodosum_M_contig87:762686..780699 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig87.51.1mRNA_A-nodosum_M_contig87.51.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig87 762638..780972 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig87.51.1 ID=prot_A-nodosum_M_contig87.51.1|Name=mRNA_A-nodosum_M_contig87.51.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=560bp
MWRGWRVFSPQIPFTGSLPRNRLGARARSAVTLPPPPPISAVVRIVAGRT
ALWATNASRELSIGATTRKGAARGREGRWRPGGKRGVRGGEAVGRRVSKG
GSSGLWMKRHLKDPYVSAATESGAPSRAAYKLVEINDKHGVLAPGDRVVD
LGAPRRGAGRWSLHALPSRRVSGTEGLPPREVAGVVVAGGAAPALGLARH
RVCPRPSRSTAAAVGAKRKGSGRREPSWWRWIYSKWSRCPACRRFEETSG
MQASRPRSSRDWRPSLSHQASPRSSGADGETAPPDPSGTQTSPDNAGDKR
SSASSAAFLLRGTSSSEHLLPRPTEPSVDSLESLLRHGAGNPSSNPKATS
SGAGAEAGAESAAAGRKSSDAASWAPGAEARSAEAADGGGLAPAFGARGR
LRRANVVLSDMAPSFTGDRDTDQGRAAGLVLDALAACVGDEGARRRRSSS
NSGQRAKGFGEGRGTASARQEFERMEENAEEEEHGDEVDDHAGGGVEGPG
PGLLARGGTFLGKFFAGRDEREVKLEASRLFRKVRMVKPPASRMRSSEMY
VLATGFLLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002877RNA_MeTrfase_FtsJ_dom
IPR029063SAM-dependent_MTases_sf