prot_A-nodosum_M_contig869.6.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig869.6.1
Unique Nameprot_A-nodosum_M_contig869.6.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length686
Homology
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BLAST of mRNA_A-nodosum_M_contig869.6.1 vs. uniprot
Match: D7G0F8_ECTSI (SMAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F8_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.700e-25
Identity = 97/194 (50.00%), Postives = 106/194 (54.64%), Query Frame = 0 
Query:  496 RPRWDKAAPGAIAKEALAAIERKAFGQKPMGQQQQKRNNLLWGADKSAG---KRPLWGGSARASEGSAASGXXXXXXXXXXXXDGTRGGSSGDDGANVTEQRWQEAAAALGPAERQAKFLRLLGAKKGATAVTAAAAGPTNGNPGSXXXXXXXXVDRS--SSSSRAANAKVMQDLEVHYQKAQRAHFGFQRGLG 684
            RPRWDKAAP A A   L+A   KA G+   G     +  L+W          KRPLWG +  A   +   G            +G       D  AN  EQRWQEAAAALGPAERQ KFLRLLGAKKGA A               XXXXXXXX      +   RAANAKVMQDLE+HYQKA RAHFGFQRGLG
Sbjct:  385 RPRWDKAAPTATA--GLSAAVAKASGRAVAG-----KKKLVWXXXXXXXXXXKRPLWGVTTEAGVAAPMGGGNGSGLSPGQAQEG-------DQQANGVEQRWQEAAAALGPAERQVKFLRLLGAKKGAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXADDGRAANAKVMQDLEIHYQKAHRAHFGFQRGLG 564
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig869.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0F8_ECTSI3.700e-2550.00SMAP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028124Small acidic protein-like domainPFAMPF15477SMAPcoord: 595..684
e-value: 4.0E-11
score: 43.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..603
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 622..659
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..349
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..242
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 557..576
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 362..413
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 628..659
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig869contigA-nodosum_M_contig869:31578..40203 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig869.6.1mRNA_A-nodosum_M_contig869.6.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig869 30323..40619 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig869.6.1 ID=prot_A-nodosum_M_contig869.6.1|Name=mRNA_A-nodosum_M_contig869.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=686bp
MSYGRFNNSKSNNEFGRPVERRDEGARRDRHDPAEHSFHRGPPPAEGQNF
YHQRDRSHAESSRGVSPAENGRRGPGRYAPGPDRDNGEDNRNRGFNAPEG
TIGKGRGLREQVDVYAGGNGGAGWDEGRDRKPNTGRRDDDGGPRGSLQDA
GARREDFRSDDFRGKRELERGGDDRGRPSGSSRDFDREDERSEGRAGDRG
ADPGGFHRELRRDGSRSRDQRDHGAYVVGRNRAFEDGRGRREGGGGTTGG
RSKDFGGDSSVADERQRERRRDDSRGRRGGENSDDRKRARRDVGGSYRSD
GSRDHTRDLREQPRHERGYGHGYGGVKDDPGDSSRNRPGDGRRRFPERPR
PSLGSAGRDFGDRRSGGSRDDRPRGPNRDSFERRDNRDSRDPPRHLAGTR
RNIDRRERRGTNETSPRPSGSRLSEFSPPVGFLDGQWVGGGEARGGRGRG
GADVAQKSGYGQHRDGQRAYPGTPAAPGTSVANAAGLPVSNSGSGRPRWD
KAAPGAIAKEALAAIERKAFGQKPMGQQQQKRNNLLWGADKSAGKRPLWG
GSARASEGSAASGTGNVTTSAGGVGDGTRGGSSGDDGANVTEQRWQEAAA
ALGPAERQAKFLRLLGAKKGATAVTAAAAGPTNGNPGSSGAEGGSGVDRS
SSSSRAANAKVMQDLEVHYQKAQRAHFGFQRGLGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028124SMAP_dom