prot_A-nodosum_M_contig866.12.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig866.12.1
Unique Nameprot_A-nodosum_M_contig866.12.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length156
Homology
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BLAST of mRNA_A-nodosum_M_contig866.12.1 vs. uniprot
Match: UPI0009FEBF5C (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Methanobrevibacter filiformis TaxID=55758 RepID=UPI0009FEBF5C)

HSP 1 Score: 56.2 bits (134), Expect = 3.220e-6
Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 0 
Query:   38 LNVSNGSTLSVTGSSENSDNAVITGDGTVLLLQVDLDSNVSLTGLTLSGGDGAVRVIGGSF-VEVVNCTFTRNKRTSSDQGGAVYVNGSSVVLENDTFFENTAIYGGAIY 146
            ++++ G+  +  G ++N+ N  I     V++ +  L   V L  L     DG +  I  S  + ++N TF  N   S++ GGA+Y+NGS V++   TF  NTAI+GGAI+
Sbjct: 3533 IHIAGGNYNNSNGITQNNTNLTIN-KSVVIIGETGLSGEVILDALQ----DGRIFYISPSLDITLINLTFA-NANMSNNYGGAIYINGSKVIINGSTFINNTAIHGGAIF 3636
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig866.12.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0009FEBF5C3.220e-633.64right-handed parallel beta-helix repeat-containing... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 24..154
e-value: 2.8E-6
score: 28.8
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 133..149
e-value: 3.3E-4
score: 18.4
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 25..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig866contigA-nodosum_M_contig866:294476..315281 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig866.12.1mRNA_A-nodosum_M_contig866.12.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig866 294378..315727 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig866.12.1 ID=prot_A-nodosum_M_contig866.12.1|Name=mRNA_A-nodosum_M_contig866.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=156bp
MNVSTTSDAARLAEALLCDGPAVFTVIWNGDIVSSRTLNVSNGSTLSVTG
SSENSDNAVITGDGTVLLLQVDLDSNVSLTGLTLSGGDGAVRVIGGSFVE
VVNCTFTRNKRTSSDQGGAVYVNGSSVVLENDTFFENTAIYGGAIYADGH
SNVSF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence