prot_A-nodosum_M_contig864.25.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig864.25.1
Unique Nameprot_A-nodosum_M_contig864.25.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length223
Homology
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BLAST of mRNA_A-nodosum_M_contig864.25.1 vs. uniprot
Match: D7FXW6_ECTSI (ABC transporter ATP-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW6_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 6.700e-15
Identity = 52/93 (55.91%), Postives = 62/93 (66.67%), Query Frame = 0 
Query:    6 SFVALAVASIAIEDRLSATTATAXXXXXXXXXXGLGGSGGTGANWFLKNPDGSSQGPYGLAQLLDWSNAGYVPPDSQVRWGMGGAPQPLSNVL 98
            S  A+A+A+ A  DR  A TA  XXXXXX             +NW+L+ PDGSSQGPYGL+QL +WS AGYV  DSQV+WG GG PQ LS+VL
Sbjct:    9 SLAAVALAAFASLDRAGAVTAQGXXXXXX-------------SNWYLRAPDGSSQGPYGLSQLGEWSRAGYVSADSQVQWGAGGPPQALSSVL 88
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig864.25.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXW6_ECTSI6.700e-1555.91ABC transporter ATP-binding protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035445GYF-like domain superfamilyGENE3D3.30.1490.40coord: 49..101
e-value: 4.0E-8
score: 34.8
IPR035445GYF-like domain superfamilySUPERFAMILY55277GYF domaincoord: 48..101
IPR003169GYF domainPFAMPF02213GYFcoord: 50..84
e-value: 9.0E-7
score: 28.5
IPR003169GYF domainPROSITEPS50829GYFcoord: 47..95
score: 10.880095
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig864contigA-nodosum_M_contig864:299858..303570 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig864.25.1mRNA_A-nodosum_M_contig864.25.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig864 299739..306886 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig864.25.1 ID=prot_A-nodosum_M_contig864.25.1|Name=mRNA_A-nodosum_M_contig864.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=223bp
MKCRLSFVALAVASIAIEDRLSATTATATTVGGGAAAAGLGGSGGTGANW
FLKNPDGSSQGPYGLAQLLDWSNAGYVPPDSQVRWGMGGAPQPLSNVLRN
HEERRGSFVGNAPHGGYRAAAPGEDGARVGGFFYRPPTPLRPPPPPPPTS
SPREERGDLPDSRRRGEGAGEGRGRVTSCSVVVIFCRDGRASRHRGMVRL
QAASKTSGSGGGTLHRPPRGIR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035445GYF-like_dom_sf
IPR003169GYF