prot_A-nodosum_M_contig8626.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8626.1.1
Unique Nameprot_A-nodosum_M_contig8626.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length49
Homology
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BLAST of mRNA_A-nodosum_M_contig8626.1.1 vs. uniprot
Match: A0A6H5JQF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF5_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 8.040e-8
Identity = 26/49 (53.06%), Postives = 31/49 (63.27%), Query Frame = 0 
Query:    1 MFLDEQSRNGTKGRIARRGSVSSGDIEQDIICYWCKNRGHSKKDCPKFK 49
            +FLDEQSR G KG IARRG   +     DIIC+ C  RGH  ++ PK K
Sbjct:   78 IFLDEQSRKGWKGHIARRGFAMA-TTASDIICHSCYERGHISRNFPKIK 125
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8626.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQF5_9PHAE8.040e-853.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 31..47
e-value: 2.2E-4
score: 21.2
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 32..47
score: 9.174718
NoneNo IPR availableGENE3D4.10.60.10coord: 3..49
e-value: 3.5E-7
score: 32.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 24..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8626contigA-nodosum_M_contig8626:1622..1768 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8626.1.1mRNA_A-nodosum_M_contig8626.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8626 1622..1768 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8626.1.1 ID=prot_A-nodosum_M_contig8626.1.1|Name=mRNA_A-nodosum_M_contig8626.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=49bp
MFLDEQSRNGTKGRIARRGSVSSGDIEQDIICYWCKNRGHSKKDCPKFK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf