prot_A-nodosum_M_contig8611.3.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8611.3.1
Unique Nameprot_A-nodosum_M_contig8611.3.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length139
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig8611.3.1 vs. uniprot
Match: D7FX43_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX43_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.800e-13
Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 0 
Query:    1 MMLSLGALTNLCGAGPEGAQAAAKLHHETTRKRAAKARVQQSRVADQNAAQRRNQIVRKPWVAHVNKQLKRAVSA 75
            M++SL  LT LCG     A AA KLHHET RKR+ ++R  +SRVA  NAAQR+NQ VRKPWVAHVN +L  A  A
Sbjct:  446 MLISLSLLTELCGGN---AAAAEKLHHETGRKRSERSRKDKSRVASYNAAQRQNQNVRKPWVAHVNAELNTASKA 517
[Close]
BLAST of mRNA_A-nodosum_M_contig8611.3.1 vs. uniprot
Match: A0A6H5K357_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K357_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.820e-6
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 0 
Query:   28 ETTRKRAAKARVQQSRVADQNAAQRRNQIVRKPWVAHVNKQLKRAVSA 75
            ET RKR+ ++R  +SRVA  NAAQR+NQ VRKPWVAHVN +L  A  A
Sbjct:    3 ETGRKRSERSRKDKSRVASYNAAQRQNQNVRKPWVAHVNAELNTASKA 50
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8611.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX43_ECTSI1.800e-1360.00C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5K357_9PHAE1.820e-662.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 66..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8611contigA-nodosum_M_contig8611:12660..13559 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8611.3.1mRNA_A-nodosum_M_contig8611.3.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8611 11601..14278 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8611.3.1 ID=prot_A-nodosum_M_contig8611.3.1|Name=mRNA_A-nodosum_M_contig8611.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=139bp
MMLSLGALTNLCGAGPEGAQAAAKLHHETTRKRAAKARVQQSRVADQNAA
QRRNQIVRKPWVAHVNKQLKRAVSAEEREAEEDTRSRKRRAVSPLTTADA
AVTAPGAASPEAASIPAIPAEAFGVPLGTAPINSNVEA*
back to top