prot_A-nodosum_M_contig857.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig857.1.1
Unique Nameprot_A-nodosum_M_contig857.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length159
Homology
BLAST of mRNA_A-nodosum_M_contig857.1.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY)

HSP 1 Score: 126 bits (316), Expect = 1.260e-30
Identity = 64/156 (41.03%), Postives = 97/156 (62.18%), Query Frame = 0
Query:    4 PRIWRQAMKSPEWDEWRKAEVTEMLGMVENCVYKQVARPKDKLVVGTKLRYKLKIGQDGEVEQSKCRLVAQGFWQVEGVHYTKKYSPTPATASIRMLLAIAMARDGELRHFDADQAFLKADIDEEICIEIPEEFQEFPGAAGRLNKAIYGLVQAGR 159
            P+ + +AM  P+   W+ A   E+   V+  +Y +V RP+++ V+  K  +K+K G DGE+E+ K RLVA+GF QVEG+ + + ++P    AS+R LLA+A   D E+   D   AFL  D+DEEI +++P  F+       +LNKA+YGL QAGR
Sbjct:  867 PQTYEEAMSRPDAARWKAACAEELHAFVKAELYDEVERPQNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFRRSNSLVWKLNKALYGLKQAGR 1022          
BLAST of mRNA_A-nodosum_M_contig857.1.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 126 bits (316), Expect = 1.300e-30
Identity = 64/156 (41.03%), Postives = 96/156 (61.54%), Query Frame = 0
Query:    4 PRIWRQAMKSPEWDEWRKAEVTEMLGMVENCVYKQVARPKDKLVVGTKLRYKLKIGQDGEVEQSKCRLVAQGFWQVEGVHYTKKYSPTPATASIRMLLAIAMARDGELRHFDADQAFLKADIDEEICIEIPEEFQEFPGAAGRLNKAIYGLVQAGR 159
            P+ + +AM  P+   W+ A   E+   V+  +Y +V RP+++ V+  K  +K+K G DGE+E+ K RLVA+GF QVEG+ + + ++P    AS+R LLA+A   D E+   D   AFL  D+DEEI +++P  F        +LNKA+YGL QAGR
Sbjct:  926 PQTYEEAMSRPDAARWKAACAEELHAFVKAELYDEVERPRNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALYGLKQAGR 1081          
BLAST of mRNA_A-nodosum_M_contig857.1.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 125 bits (315), Expect = 1.720e-30
Identity = 64/156 (41.03%), Postives = 97/156 (62.18%), Query Frame = 0
Query:    4 PRIWRQAMKSPEWDEWRKAEVTEMLGMVENCVYKQVARPKDKLVVGTKLRYKLKIGQDGEVEQSKCRLVAQGFWQVEGVHYTKKYSPTPATASIRMLLAIAMARDGELRHFDADQAFLKADIDEEICIEIPEEFQEFPGAAGRLNKAIYGLVQAGR 159
            P+ + +AM  P+   W+ A   E+   V+  +Y +V RP+++ V+  K  +K+K G DGE+E+ K RLVA+GF QVEG+ + + ++P    AS+R LLA+A   D E+   D   AFL  D+DEEI +++P  F+       +LNKA+YGL QAGR
Sbjct:  603 PQTYEEAMSRPDAARWKAACAEELHAFVKAELYDKVERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAGR 758          
BLAST of mRNA_A-nodosum_M_contig857.1.1 vs. uniprot
Match: A0A401GM49_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GM49_9APHY)

HSP 1 Score: 120 bits (302), Expect = 9.810e-29
Identity = 64/154 (41.56%), Postives = 93/154 (60.39%), Query Frame = 0
Query:    5 RIWRQAMKSPEWDEWRKAEVTEMLGMVENCVYKQVARPKDKLVVGTKLRYKLKIGQDGEVEQSKCRLVAQGFWQVEGVHYTKKYSPTPATASIRMLLAIAMARDGELRHFDADQAFLKADIDEEICIEIPEEFQEFPGAAGRLNKAIYGLVQAG 158
            + + +AM  P+   W+ A   E+   V+  +Y +V RP+++ VV  K  +K+K G DGE+E+ K RLVA+GF QVEG+ + + ++P     SIR LLA+    D E+   D   AFL  D+DEEI + IP  F++      RLNKA+YGL QAG
Sbjct:  879 QTYEEAMSRPDAARWKAACTEELHAFVKAELYDEVERPRNRKVVDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFTSIRTLLALTAKLDLEIHQMDVKSAFLNGDLDEEIYMNIPPSFRKDNKLIWRLNKALYGLKQAG 1032          
BLAST of mRNA_A-nodosum_M_contig857.1.1 vs. uniprot
Match: A0A6D2JI50_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JI50_9BRAS)

HSP 1 Score: 108 bits (269), Expect = 1.270e-25
Identity = 65/160 (40.62%), Postives = 91/160 (56.88%), Query Frame = 0
Query:    4 PRIWRQAMKSPEWDEWRKAEVTEMLGMVENCVYKQVARPKDKLVVGTKLRYKLKIGQDG-EVEQSKCRLVAQGFWQVEGVHYTKKYSPTPATASIRMLLAIAMARDGELRHFDADQAFLKADIDEEICIEIPEEFQEFPGAAGR---LNKAIYGLVQAGR 159
            PR   QA KSP W EW  A   E   +++N  +  + +P    VVG+K  Y +K G  G E+++ KCRLVAQGF Q EGV Y + +SP     SIR++L+  + RD EL   D   AFL  D++E I ++ PE F +  G   +   L K++YGL Q+ R
Sbjct:    4 PRSMAQARKSPNWKEWDNASKEEWSSLMKNHTWDLIDKPDGARVVGSKWLYTIKSGIPGVELKRFKCRLVAQGFSQTEGVDYNEIFSPVVKHVSIRIMLSAVVNRDYELEQMDVKTAFLHGDLEERILMKQPEGFIK-KGDENKVCLLRKSLYGLKQSPR 162          
BLAST of mRNA_A-nodosum_M_contig857.1.1 vs. uniprot
Match: A0A1Y1MCL5_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1MCL5_PHOPY)

HSP 1 Score: 109 bits (272), Expect = 1.020e-24
Identity = 61/156 (39.10%), Postives = 86/156 (55.13%), Query Frame = 0
Query:    4 PRIWRQAMKSPEWDEWRKAEVTEMLGMVENCVYKQVARPKDKLVVGTKLRYKLKIGQDGEVEQSKCRLVAQGFWQVEGVHYTKKYSPTPATASIRMLLAIAMARDGELRHFDADQAFLKADIDEEICIEIPEEFQEFPGAAGRLNKAIYGLVQAGR 159
            P  +R A    +W +W +A  +E   + +N  +  VARP DK ++  K  YKLK G  GE+ + K R V +GF Q EG+ Y + ++      S + + AIA A D EL   D   AFL  DID ++ +E P EF +  G   +LNKA+YGL QA R
Sbjct:  485 PPSYRHAKADLDWPKWLEAMRSEHESLKDNKTWSLVARPTDKRILSGKWVYKLKRGASGEILRYKARWVVRGFEQTEGIDYDETFASVVKPMSYKAIFAIAAALDLELEQMDVKTAFLYGDIDGDVYMEQPSEFNDGTGMVCKLNKALYGLKQAPR 640          
BLAST of mRNA_A-nodosum_M_contig857.1.1 vs. uniprot
Match: A0A0B4EZU2_METAF (Gag-Pol polyprotein (Fragment) n=2 Tax=Metarhizium TaxID=5529 RepID=A0A0B4EZU2_METAF)

HSP 1 Score: 109 bits (272), Expect = 1.060e-24
Identity = 61/156 (39.10%), Postives = 86/156 (55.13%), Query Frame = 0
Query:    4 PRIWRQAMKSPEWDEWRKAEVTEMLGMVENCVYKQVARPKDKLVVGTKLRYKLKIGQDGEVEQSKCRLVAQGFWQVEGVHYTKKYSPTPATASIRMLLAIAMARDGELRHFDADQAFLKADIDEEICIEIPEEFQEFPGAAGRLNKAIYGLVQAGR 159
            P  +R A    +W +W +A  +E   + +N  +  VARP DK ++  K  YKLK G  GE+ + K R V +GF Q EG+ Y + ++      S + + AIA A D EL   D   AFL  DID ++ +E P EF +  G   +LNKA+YGL QA R
Sbjct:  827 PPSYRHAKADLDWPKWLEAMRSEHESLKDNKTWSLVARPTDKRILSGKWVYKLKRGASGEILRYKARWVVRGFEQTEGIDYDETFASVVKPMSYKAIFAIAAALDLELEQMDVKTAFLYGDIDGDVYMEQPSEFNDGTGMVCKLNKALYGLKQAPR 982          
BLAST of mRNA_A-nodosum_M_contig857.1.1 vs. uniprot
Match: A0A6G0WMJ0_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WMJ0_9STRA)

HSP 1 Score: 106 bits (265), Expect = 7.470e-24
Identity = 60/157 (38.22%), Postives = 93/157 (59.24%), Query Frame = 0
Query:    4 PRIWRQAMKSPEWDEWRKAEVTEMLGMVENCVYKQVARPKDKLVVGTKLRYKLKIGQDGEVEQSKCRLVAQGFWQVEGVHYTKKYSPTPATASIRMLLAIAMARDGELRHFDADQAFLKADIDEEICIEIPEEFQEFPGA-AGRLNKAIYGLVQAGR 159
            P+  ++A+  P  D+WR+A   E+  ++ N  ++ V RPKD  +V  K  + +K    GE+E+ K RLVA+GF Q  GV YT+ +SP     S+R+LL + +  D ++ H D  QA++KA +D  I + IP+     P   A RL K++YGL Q+GR
Sbjct:  377 PKTPKEALDGPNADKWREAMQLEVDNLIGNGTWELVDRPKDINIVSNKWVFNIKYDSAGEIEKFKARLVARGFLQRYGVDYTETFSPVIQQQSVRLLLMLGLHFDVDVAHVDVPQAYVKAGLDTNIYMAIPDMVPGDPETQALRLLKSLYGLKQSGR 533          
BLAST of mRNA_A-nodosum_M_contig857.1.1 vs. uniprot
Match: M4CW55_BRARP (Integrase catalytic domain-containing protein n=1 Tax=Brassica rapa subsp. pekinensis TaxID=51351 RepID=M4CW55_BRARP)

HSP 1 Score: 106 bits (265), Expect = 9.190e-24
Identity = 61/165 (36.97%), Postives = 95/165 (57.58%), Query Frame = 0
Query:    1 MPGPRIWRQAMKSPEWDEWRKAEVTEMLGMVENCVYKQVARPKDKLVVGTKLRYKLKIGQDGEVEQSKCRLVAQGFWQVEGVHYTKKYSPTPATASIRMLLAIAMARDGELRHFDADQAFLKADIDEEICIEIPEEF-----QEFP-GAAGRLNKAIYGLVQAGR 159
            +P PR + QA K  EW +    E+T    + EN  +   + P+ K  VG K  +K+K+  DG +E+ K RLVA+G+ Q EG+ Y + +SP    +++++LLA+A A++  L   D   AFL  D+DEEI + +P  +     + FP  A  +L K++YGL QA R
Sbjct:  713 IPEPRNFDQACKLKEWCDAMGIEIT---ALEENNTWLVCSLPEGKRAVGCKWVFKVKLNADGTLERYKARLVAKGYTQQEGIDYVETFSPVAKLSTVKLLLAVAAAKNWSLSQLDVSNAFLNGDLDEEIYMSLPPGYSPRQGESFPPNAVCKLKKSLYGLKQASR 874          
BLAST of mRNA_A-nodosum_M_contig857.1.1 vs. uniprot
Match: A0A2N5UJB8_9BASI (Uncharacterized protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5UJB8_9BASI)

HSP 1 Score: 106 bits (265), Expect = 9.390e-24
Identity = 62/156 (39.74%), Postives = 85/156 (54.49%), Query Frame = 0
Query:    4 PRIWRQAMKSPEWDEWRKAEVTEMLGMVENCVYKQVARPKDKLVVGTKLRYKLKIGQDGEVEQSKCRLVAQGFWQVEGVHYTKKYSPTPATASIRMLLAIAMARDGELRHFDADQAFLKADIDEEICIEIPEEFQEFPGAAGRLNKAIYGLVQAGR 159
            P  ++QAMKSPE +EW KA   E+  + E  V+     P DK  +  +  +  K G DG   + K R VA+GF QV GV +   ++PT    S+R+LL +A A    +  FD   A+L   IDEEI ++ PE     PG A +L KA+YG  QA R
Sbjct: 1141 PSTFKQAMKSPEREEWLKAIAVELNNLEEMRVWAVAQLPSDKKALNGRWVFATKPGTDGSNVRFKARFVAKGFTQVAGVDFNATFAPTTTFVSLRLLLTVAAAHRWPVHSFDFVAAYLNLPIDEEIWLKPPEGMDVPPGQALKLEKALYGTRQAAR 1296          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig857.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401H317_9APHY1.260e-3041.03Retrovirus-related Pol polyprotein from transposon... [more]
A0A401G4V0_9APHY1.300e-3041.03Retrovirus-related Pol polyprotein from transposon... [more]
A0A401H123_9APHY1.720e-3041.03Retrovirus-related Pol polyprotein from transposon... [more]
A0A401GM49_9APHY9.810e-2941.56Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2JI50_9BRAS1.270e-2540.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1Y1MCL5_PHOPY1.020e-2439.10Integrase catalytic domain-containing protein (Fra... [more]
A0A0B4EZU2_METAF1.060e-2439.10Gag-Pol polyprotein (Fragment) n=2 Tax=Metarhizium... [more]
A0A6G0WMJ0_9STRA7.470e-2438.22Integrase catalytic domain-containing protein n=1 ... [more]
M4CW55_BRARP9.190e-2436.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N5UJB8_9BASI9.390e-2439.74Uncharacterized protein n=1 Tax=Puccinia coronata ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 33..159
e-value: 1.5E-26
score: 93.5
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 8..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig857contigA-nodosum_M_contig857:76871..77347 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig857.1.1mRNA_A-nodosum_M_contig857.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig857 76871..77347 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig857.1.1 ID=prot_A-nodosum_M_contig857.1.1|Name=mRNA_A-nodosum_M_contig857.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=159bp
MPGPRIWRQAMKSPEWDEWRKAEVTEMLGMVENCVYKQVARPKDKLVVGT
KLRYKLKIGQDGEVEQSKCRLVAQGFWQVEGVHYTKKYSPTPATASIRML
LAIAMARDGELRHFDADQAFLKADIDEEICIEIPEEFQEFPGAAGRLNKA
IYGLVQAGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2