prot_A-nodosum_M_contig852.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig852.1.1
Unique Nameprot_A-nodosum_M_contig852.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length458
Homology
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BLAST of mRNA_A-nodosum_M_contig852.1.1 vs. uniprot
Match: D8LQW5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW5_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.710e-15
Identity = 112/419 (26.73%), Postives = 165/419 (39.38%), Query Frame = 0 
Query:   99 LPSQSERWRSRIFSAIPSTQRVR-----------------SFVRTPEMVIFLLGLASLISLIIFIYDVIISKTFRPLTVAVFFSAGGYCVLFIQGECVLA--------EIMEARAADTSRRVITKEERRLLFHYFTL--------GPPTPLQNTSSCEDAPSGACTPSGTSTAPGHGDGREAGGFSQKDLVHSSSDDEEAGKAQGGHPMNAAVP-------PRDGPLGEGE-------------------------GSVPTRGETRAVE--SETRRGGRRSGSALRKVFSKPKPHGIDVMESTEAGARGQQHPDTAAVGEIVDAQGVPREEKGICADA--CSTDDATTGCSRDGHACSAPEKKXXXXXXXXXAQR--------RASWKWSTGEQCVVCFGEYFYGEDLCQLPCCHMYHA 440
            LP   E W     +A+P  +R+R                 S VR+PE  IF+LGLA+L++ I+FI D+I  +  RP +V VF +AG YC+  I+ +  LA        EIM+  A  +SRRVI+KE+RR LF YFT         G  T    T + +DA   A       TA                       D    + + G P   ++P       P  GP G G                          G++   G   AV   ++           +  V  K +  G+ ++  +   A G     + A+G       +    +G C       +D++  G S    + + PEK+          +           S  WS+GE C++CFGEY  G+ LC+LPC H YHA
Sbjct:   73 LPDFLEFWG--FAAAVPEDERLRREREXXXXXHRRRGLAGSCVRSPEFSIFVLGLAALLAFIVFICDMITGRRLRPTSVLVFVAAGTYCLALIKQQRDLAASEQALVIEIMDGSATSSSRRVISKEDRRNLFDYFTFRRSSSTNKGVWTAATATQTDKDAEVSAME---QGTAAPTAXXXXXXXXXXXXXXXXGGGDTSDREDEAGSPRPCSLPSPLGLSAPTRGPRGAGSDTAAPPSPEQPLATPPVSPSALALAGTLQGEGAAAAVGGVADXXXXXXXXXVEVVGVSGKEEGGGVMMLAPSSGAAAGLSPLFSVALGRDEGESAI----RGSCCGGGVADSDESGEGGSGSKPSVAGPEKRPPPEGEEFDDKEVPERGMTGGLSELWSSGESCIICFGEYAEGDVLCRLPCRHTYHA 482
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BLAST of mRNA_A-nodosum_M_contig852.1.1 vs. uniprot
Match: A0A6H5KVF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 8.470e-12
Identity = 51/138 (36.96%), Postives = 77/138 (55.80%), Query Frame = 0 
Query:   99 LPSQSERWRSRIFSAIPSTQRVR-----------------SFVRTPEMVIFLLGLASLISLIIFIYDVIISKTFRPLTVAVFFSAGGYCVLFIQGECVLA----------EIMEARAADTSRRVITKEERRLLFHYFT 209
            LP+  E W   + +A+P  +R+R                 S VR+PE  IF+LGLA+L++ ++F  D+I  +  RP +V VF +AG YC+  ++ +  LA          E+M+  A  +SRRVI+KE+RR LF YFT
Sbjct:  100 LPNFLEFWG--LAAAVPEGERLRRERERRERSHNRRGPVGSCVRSPEFSIFVLGLAALLAFMVFFCDMIAGRRLRPTSVLVFVAAGTYCLALLKQQRDLAALERAPALVVEVMDGSATSSSRRVISKEDRRNLFDYFT 235
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig852.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQW5_ECTSI1.710e-1526.73RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KVF8_9PHAE8.470e-1236.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..319
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..238
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 404..440

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig852contigA-nodosum_M_contig852:14496..23180 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig852.1.1mRNA_A-nodosum_M_contig852.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig852 14372..44673 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig852.1.1 ID=prot_A-nodosum_M_contig852.1.1|Name=mRNA_A-nodosum_M_contig852.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=458bp
MLRRFRCVQIFLKPKPTTLPPPCPALPTIYSSTDTYRESMDRGFDAGVAV
VPDTNGSVNENVDMDVNARVRRETSPAVVPIGRGEPPVAGVGTGEGMILP
SQSERWRSRIFSAIPSTQRVRSFVRTPEMVIFLLGLASLISLIIFIYDVI
ISKTFRPLTVAVFFSAGGYCVLFIQGECVLAEIMEARAADTSRRVITKEE
RRLLFHYFTLGPPTPLQNTSSCEDAPSGACTPSGTSTAPGHGDGREAGGF
SQKDLVHSSSDDEEAGKAQGGHPMNAAVPPRDGPLGEGEGSVPTRGETRA
VESETRRGGRRSGSALRKVFSKPKPHGIDVMESTEAGARGQQHPDTAAVG
EIVDAQGVPREEKGICADACSTDDATTGCSRDGHACSAPEKKEEDKKEEE
EAQRRASWKWSTGEQCVVCFGEYFYGEDLCQLPCCHMYHATVTILQHKTP
QTVVLCI*
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