prot_A-nodosum_M_contig849.12.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig849.12.1
Unique Nameprot_A-nodosum_M_contig849.12.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length52
Homology
BLAST of mRNA_A-nodosum_M_contig849.12.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.120e-16
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    1 RGINIISARWVYSWKSEEFGIVVRTKARLVARGLGQREGIDFFDTF 46
            RG N+ISA+WVYSWK +EFG  VR KARLVARG  QREG+DFF+TF
Sbjct:  819 RGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETF 864          
BLAST of mRNA_A-nodosum_M_contig849.12.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.120e-16
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    1 RGINIISARWVYSWKSEEFGIVVRTKARLVARGLGQREGIDFFDTF 46
            RG N+ISA+WVYSWK +EFG  VR KARLVARG  QREG+DFF+TF
Sbjct: 1286 RGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETF 1331          
BLAST of mRNA_A-nodosum_M_contig849.12.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.120e-16
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    1 RGINIISARWVYSWKSEEFGIVVRTKARLVARGLGQREGIDFFDTF 46
            RG N+ISA+WVYSWK +EFG  VR KARLVARG  QREG+DFF+TF
Sbjct: 1405 RGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETF 1450          
BLAST of mRNA_A-nodosum_M_contig849.12.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 9.660e-16
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    1 RGINIISARWVYSWKSEEFGIVVRTKARLVARGLGQREGIDFFDTF 46
            RG N+ISA+WV+SWK +EFG  VR KARLVARG  QREG+DFF+TF
Sbjct:  144 RGTNVISAKWVFSWKRDEFGYAVRAKARLVARGFAQREGVDFFETF 189          
BLAST of mRNA_A-nodosum_M_contig849.12.1 vs. uniprot
Match: A0A6H5KM90_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM90_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 7.040e-15
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0
Query:    1 RGINIISARWVYSWKSEEFGIVVRTKARLVARGLGQREGIDFFDTF 46
            RG N+ISA+WVYS K +EFG  VR KARLVARG  QREG+DFF+TF
Sbjct:  158 RGTNVISAKWVYSRKGDEFGYAVRAKARLVARGFAQREGVDFFETF 203          
BLAST of mRNA_A-nodosum_M_contig849.12.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.120e-14
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0
Query:    1 RGINIISARWVYSWKSEEFGIVVRTKARLVARGLGQREGIDFFDTF 46
            RG N+ISA+WVYSWK +EFG  VR KARLVARG  QRE +DF +TF
Sbjct: 1519 RGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREVVDFVETF 1564          
BLAST of mRNA_A-nodosum_M_contig849.12.1 vs. uniprot
Match: A0A6H5KLE6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE6_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.400e-11
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    2 GINIISARWVYSWKSEEFGIVVRTKARLVARGLGQREGIDFFDTF 46
            G N+I ARWVY WK+ E G +++ KARLVA+G  Q+ G+D+F+TF
Sbjct:   56 GCNVIDARWVYKWKANETGKILKAKARLVAKGFKQKHGVDYFETF 100          
BLAST of mRNA_A-nodosum_M_contig849.12.1 vs. uniprot
Match: A0A6H5L6C0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6C0_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.650e-10
Identity = 24/45 (53.33%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    2 GINIISARWVYSWKSEEFGIVVRTKARLVARGLGQREGIDFFDTF 46
            G N+I ARWV+ WK++E G +V+ KARLVA+G  Q+ G+D+ +TF
Sbjct:  220 GCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETF 264          
BLAST of mRNA_A-nodosum_M_contig849.12.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.670e-10
Identity = 24/45 (53.33%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    2 GINIISARWVYSWKSEEFGIVVRTKARLVARGLGQREGIDFFDTF 46
            G N+I ARWV+ WK++E G +V+ KARLVA+G  Q+ G+D+ +TF
Sbjct:  254 GCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETF 298          
BLAST of mRNA_A-nodosum_M_contig849.12.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.670e-10
Identity = 24/45 (53.33%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    2 GINIISARWVYSWKSEEFGIVVRTKARLVARGLGQREGIDFFDTF 46
            G N+I ARWV+ WK++E G +V+ KARLVA+G  Q+ G+D+ +TF
Sbjct:  187 GCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETF 231          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig849.12.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV09_9PHAE2.120e-1673.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBJ6_9PHAE2.120e-1673.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAC2_9PHAE2.120e-1673.91Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KMK9_9PHAE9.660e-1671.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KM90_9PHAE7.040e-1571.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JVD9_9PHAE3.120e-1469.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLE6_9PHAE3.400e-1155.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6C0_9PHAE2.650e-1053.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV80_9PHAE2.670e-1053.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE2.670e-1053.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 4..47
e-value: 5.8E-8
score: 32.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig849contigA-nodosum_M_contig849:284144..284299 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig849.12.1mRNA_A-nodosum_M_contig849.12.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig849 284118..284299 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig849.12.1 ID=prot_A-nodosum_M_contig849.12.1|Name=mRNA_A-nodosum_M_contig849.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
RGINIISARWVYSWKSEEFGIVVRTKARLVARGLGQREGIDFFDTFWRIL
Q*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2