prot_A-nodosum_M_contig8484.1.3 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8484.1.3
Unique Nameprot_A-nodosum_M_contig8484.1.3
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length91
Homology
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BLAST of mRNA_A-nodosum_M_contig8484.1.3 vs. uniprot
Match: D7FPF8_ECTSI (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF8_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 6.120e-14
Identity = 39/58 (67.24%), Postives = 41/58 (70.69%), Query Frame = 0 
Query:    1 MANPRMFEFVGEEEEASELCDNPAEFNTCVFKLEVKHPASFEDMPDPLPKGTSMPPAP 58
            MANPRMFEFVGEE       D P EFNTCVFKLEVK+PA   DMPDP+P GTS    P
Sbjct:  113 MANPRMFEFVGEEGGEQ---DEPTEFNTCVFKLEVKNPADPADMPDPMPTGTSYAAGP 167
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8484.1.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPF8_ECTSI6.120e-1467.24DNA-directed RNA polymerases I and III subunit RPA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..72

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8484contigA-nodosum_M_contig8484:5348..6829 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8484.1.3mRNA_A-nodosum_M_contig8484.1.3Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8484 3985..8908 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8484.1.3 ID=prot_A-nodosum_M_contig8484.1.3|Name=mRNA_A-nodosum_M_contig8484.1.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=91bp
MANPRMFEFVGEEEEASELCDNPAEFNTCVFKLEVKHPASFEDMPDPLPK
GTSMPPAPAHHERLQRRDGVVSARRSGRALRAGWRAETRA*
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