prot_A-nodosum_M_contig842.11.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig842.11.1
Unique Nameprot_A-nodosum_M_contig842.11.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length103
Homology
BLAST of mRNA_A-nodosum_M_contig842.11.1 vs. uniprot
Match: D8LPU6_ECTSI (Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPU6_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 2.630e-61
Identity = 96/102 (94.12%), Postives = 97/102 (95.10%), Query Frame = 0
Query:    1 MAEHKKKERETVLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTEETRELGLVVCRGTQVSLISPTDGMEEIENPFVAQEG 102
            MAE KKKERETVLDLQKYLDQGVRVKLQGGREV GVLKGFDPLVNVVLDECIEFIRDP DPYKLTEETRELGLVVCRGTQVSLISP DGMEEIENPF+A EG
Sbjct:    1 MAEVKKKERETVLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPTDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFMAPEG 102          
BLAST of mRNA_A-nodosum_M_contig842.11.1 vs. uniprot
Match: A0A836C8L6_9STRA (Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8L6_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.330e-49
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 0
Query:    1 MAEHKKKERETVLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTEETRELGLVVCRGTQVSLISPTDGMEEIENPFVAQEG 102
            MAE KK   E VLDL KYLDQGVRVK QGGREV GVLKG+D LVN+VLD+C+EFIRDP+DPY++T+ETR LGLVVCRGTQVSLISP DGMEEI NPF+A EG
Sbjct:    1 MAERKK---ENVLDLTKYLDQGVRVKFQGGREVSGVLKGYDQLVNLVLDDCVEFIRDPSDPYRVTDETRTLGLVVCRGTQVSLISPMDGMEEIANPFLAAEG 99          
BLAST of mRNA_A-nodosum_M_contig842.11.1 vs. uniprot
Match: A0A7S2CML5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CML5_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.190e-45
Identity = 72/101 (71.29%), Postives = 88/101 (87.13%), Query Frame = 0
Query:    1 MAEHKKKERETVLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTEETRELGLVVCRGTQVSLISPTDGMEEIENPFVAQE 101
            MA+  KKE  ++LDL KY+DQGVRVK QGGREV+G+LKG+D LVN+VLDEC+E++RDP DPY++T++TR LG+VVCRGTQVSLISP DG EEI NPFVA E
Sbjct:   22 MAQASKKE--SILDLNKYVDQGVRVKFQGGREVQGILKGYDQLVNLVLDECVEYLRDPDDPYRITDDTRTLGMVVCRGTQVSLISPMDGTEEIANPFVAAE 120          
BLAST of mRNA_A-nodosum_M_contig842.11.1 vs. uniprot
Match: A0A7S2XWT1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWT1_9STRA)

HSP 1 Score: 149 bits (376), Expect = 7.990e-45
Identity = 71/93 (76.34%), Postives = 79/93 (84.95%), Query Frame = 0
Query:    9 RETVLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTEETRELGLVVCRGTQVSLISPTDGMEEIENPFVAQE 101
            RE VLDL KY+DQGVRVK QGGREV G+LKGFD LVN+VLDE +EF+RDP DPY++T ETR LGLVVCRG QVSLISP DGMEEI NPF+  E
Sbjct:    7 RENVLDLNKYVDQGVRVKFQGGREVHGILKGFDQLVNLVLDETVEFLRDPDDPYRITNETRTLGLVVCRGPQVSLISPVDGMEEIANPFLQME 99          
BLAST of mRNA_A-nodosum_M_contig842.11.1 vs. uniprot
Match: A0A7S2BSU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSU7_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.090e-44
Identity = 67/92 (72.83%), Postives = 81/92 (88.04%), Query Frame = 0
Query:    9 RETVLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTEETRELGLVVCRGTQVSLISPTDGMEEIENPFVAQ 100
            +E++LD+ KY+DQGVRVK QGGREV G LKGFD LVN+VLD+C EF+RDP DPY++T+E+R LG+VVCRGTQVSLISP DG EEI NPF+AQ
Sbjct:   18 KESILDINKYIDQGVRVKFQGGREVTGTLKGFDQLVNLVLDDCTEFLRDPEDPYRITDESRTLGMVVCRGTQVSLISPVDGTEEISNPFIAQ 109          
BLAST of mRNA_A-nodosum_M_contig842.11.1 vs. uniprot
Match: UPI00145594BD (U6 snRNA-associated Sm-like protein LSm7 n=2 Tax=Asteroidea TaxID=7588 RepID=UPI00145594BD)

HSP 1 Score: 145 bits (367), Expect = 1.770e-43
Identity = 70/102 (68.63%), Postives = 85/102 (83.33%), Query Frame = 0
Query:    1 MAEHKKKERETVLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTEETRELGLVVCRGTQVSLISPTDGMEEIENPFVAQEG 102
            MA+ KKK +E++LDL KY+D+  RVK QGGREV G+LKGFDPL+N+VLD   E++RDP DPYKLTE+TR++GLVVCRGT V LI P DGME+I NPFV QEG
Sbjct:    1 MAQEKKK-KESILDLSKYIDKPTRVKFQGGREVTGILKGFDPLLNLVLDGTSEYLRDPDDPYKLTEDTRDIGLVVCRGTSVVLICPADGMEQIANPFVQQEG 101          
BLAST of mRNA_A-nodosum_M_contig842.11.1 vs. uniprot
Match: A0A7S2ST35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST35_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.360e-43
Identity = 67/93 (72.04%), Postives = 81/93 (87.10%), Query Frame = 0
Query:    9 RETVLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTEETRELGLVVCRGTQVSLISPTDGMEEIENPFVAQE 101
            +E++LDL KY+DQGVRVK QGGREV GVLKG+D LVN+VLDE +E++RDP DPY++TE+TR LG+VVCRGTQVSLISP DG EEI NPF+  E
Sbjct:    6 KESILDLGKYIDQGVRVKFQGGREVHGVLKGYDQLVNLVLDEAVEYLRDPEDPYRITEQTRTLGMVVCRGTQVSLISPMDGTEEIANPFLQVE 98          
BLAST of mRNA_A-nodosum_M_contig842.11.1 vs. uniprot
Match: A0A8B7Z2I4_ACAPL (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Z2I4_ACAPL)

HSP 1 Score: 145 bits (367), Expect = 4.310e-43
Identity = 68/102 (66.67%), Postives = 85/102 (83.33%), Query Frame = 0
Query:    1 MAEHKKKERETVLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTEETRELGLVVCRGTQVSLISPTDGMEEIENPFVAQEG 102
            MA+ +KK++E++LDL KY+D+  RVK QGGREV G+LKGFDPL+N+VLD   EF RDP DPYK+TE+TR+LGLVVCRGT + LI P DGME+I NPF+ QEG
Sbjct:   29 MAQQEKKKKESILDLSKYIDKPTRVKFQGGREVTGILKGFDPLLNLVLDGTTEFQRDPDDPYKITEDTRDLGLVVCRGTSLVLICPEDGMEQIANPFLQQEG 130          
BLAST of mRNA_A-nodosum_M_contig842.11.1 vs. uniprot
Match: UPI0003F0D609 (U6 snRNA-associated Sm-like protein LSm7-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0D609)

HSP 1 Score: 144 bits (364), Expect = 5.220e-43
Identity = 66/102 (64.71%), Postives = 84/102 (82.35%), Query Frame = 0
Query:    1 MAEHKKKERETVLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTEETRELGLVVCRGTQVSLISPTDGMEEIENPFVAQEG 102
            MA+ +KK++E++LDL K++D+ +RVK QGGRE  G+LKG+DPL+N+V+D   EF+RDP DPYKL EETR+LGLVVCRGT V LI P DGME I NPF+ QEG
Sbjct:    1 MADKEKKKKESILDLSKFIDKPIRVKFQGGREASGILKGYDPLLNLVIDGTTEFVRDPDDPYKLLEETRQLGLVVCRGTSVVLICPADGMEAIANPFIQQEG 102          
BLAST of mRNA_A-nodosum_M_contig842.11.1 vs. uniprot
Match: A0A0E9XAQ0_ANGAN (Sm domain-containing protein n=3 Tax=Actinopteri TaxID=186623 RepID=A0A0E9XAQ0_ANGAN)

HSP 1 Score: 143 bits (360), Expect = 2.190e-42
Identity = 68/101 (67.33%), Postives = 84/101 (83.17%), Query Frame = 0
Query:    1 MAEHKKKERETVLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTEETRELGLVVCRGTQVSLISPTDGMEEIENPFVAQE 101
            MA+ +KK++E++ DL KY+D+ +RVK QGGRE  GVLKGFDPL+N+VLD  IE++RDP D YKLTE+TR+LGLVVCRGT V LISP DGME I NPFV Q+
Sbjct:    1 MADKEKKKKESIFDLSKYIDKTIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLISPHDGMEAIPNPFVQQQ 101          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig842.11.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPU6_ECTSI2.630e-6194.12Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A836C8L6_9STRA1.330e-4978.43Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2CML5_9STRA1.190e-4571.29Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2XWT1_9STRA7.990e-4576.34Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2BSU7_9STRA1.090e-4472.83Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI00145594BD1.770e-4368.63U6 snRNA-associated Sm-like protein LSm7 n=2 Tax=A... [more]
A0A7S2ST35_9STRA2.360e-4372.04Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8B7Z2I4_ACAPL4.310e-4366.67U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=A... [more]
UPI0003F0D6095.220e-4364.71U6 snRNA-associated Sm-like protein LSm7-like n=1 ... [more]
A0A0E9XAQ0_ANGAN2.190e-4267.33Sm domain-containing protein n=3 Tax=Actinopteri T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 13..86
e-value: 7.2E-24
score: 95.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 14..86
e-value: 5.1E-22
score: 77.3
NoneNo IPR availableGENE3D2.30.30.100coord: 1..96
e-value: 1.6E-33
score: 116.8
NoneNo IPR availablePIRSFPIRSF037188Lsm7coord: 1..102
e-value: 3.8E-44
score: 147.2
NoneNo IPR availablePANTHERPTHR10553:SF5U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7coord: 3..101
IPR044641Sm-like protein Lsm7/SmGPANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 3..101
IPR017132Sm-like protein Lsm7CDDcd01729LSm7coord: 9..97
e-value: 1.00884E-56
score: 168.148
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 15..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig842contigA-nodosum_M_contig842:111115..131721 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig842.11.1mRNA_A-nodosum_M_contig842.11.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig842 110856..132562 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig842.11.1 ID=prot_A-nodosum_M_contig842.11.1|Name=mRNA_A-nodosum_M_contig842.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=103bp
MAEHKKKERETVLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDE
CIEFIRDPADPYKLTEETRELGLVVCRGTQVSLISPTDGMEEIENPFVAQ
EG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR044641Lsm7/SmG-like
IPR017132Lsm7
IPR010920LSM_dom_sf