prot_A-nodosum_M_contig840.22.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig840.22.2
Unique Nameprot_A-nodosum_M_contig840.22.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length110
Homology
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BLAST of mRNA_A-nodosum_M_contig840.22.2 vs. uniprot
Match: D7FKD2_ECTSI (Coiled-coil domain 6-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD2_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 4.730e-29
Identity = 75/104 (72.12%), Postives = 81/104 (77.88%), Query Frame = 0 
Query:   13 PVSTPTRRSSHGSISATSPGSPELEVSVLRRELLMEKHRNAHLEAELIKLRKSAVEISQQVEAEEECLINR--------------MMKRLMELSRRKREDLALE 102
            PVSTPTR +S  S + TSPGSPELEVSVLRRELLMEKH+N+HLE EL+KLRKSAVEISQQVEAEEECLINR              MMKRLMEL + K EDLALE
Sbjct:   23 PVSTPTRPASFPSCT-TSPGSPELEVSVLRRELLMEKHKNSHLEGELVKLRKSAVEISQQVEAEEECLINRTXXXXXXXXXXXXXMMKRLMELKKEK-EDLALE 124
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BLAST of mRNA_A-nodosum_M_contig840.22.2 vs. uniprot
Match: A0A835ZC40_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC40_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.600e-7
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 0 
Query:   33 SPELEV-SVLRRELLMEKHRNAHLEAELIKLRKSAVEISQQVEAEEECLINRMMKRLMELSRRKREDLAL 101
            S E+EV + L+R+LL EK R+A L  E+ ++R +A EISQ VEAEEE + NRMMKRLM+L + K E LA+
Sbjct:    5 SAEVEVIAQLKRDLLAEKQRSAWLTKEVERMRHAAAEISQAVEAEEEMITNRMMKRLMDLKKEK-EQLAV 73
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BLAST of mRNA_A-nodosum_M_contig840.22.2 vs. uniprot
Match: A0A7S2RXB8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXB8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.140e-7
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 0 
Query:   32 GSPELEVSVLRRELLMEKHRNAHLEAELIKLRKSAVEISQQVEAEEECLINRMMKRLMELSRRKREDLALE 102
            G PE +V  LR EL  E+ RNA L  E+ +L++   E   Q E EEEC+INRMMKRL +L R K E LA+E
Sbjct:   53 GDPE-DVDTLRMELTRERQRNASLAQEVQRLKRVCAESISQAETEEECIINRMMKRLSDLKREK-EALAIE 121
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig840.22.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKD2_ECTSI4.730e-2972.12Coiled-coil domain 6-like protein n=1 Tax=Ectocarp... [more]
A0A835ZC40_9STRA1.600e-755.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RXB8_9STRA2.140e-752.11Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 52..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
IPR019152Protein of unknown function DUF2046PFAMPF09755DUF2046coord: 37..107
e-value: 3.1E-7
score: 29.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig840contigA-nodosum_M_contig840:267203..285230 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig840.22.2mRNA_A-nodosum_M_contig840.22.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig840 260348..285664 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig840.22.2 ID=prot_A-nodosum_M_contig840.22.2|Name=mRNA_A-nodosum_M_contig840.22.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=110bp
MEKMSSSSLVPTPVSTPTRRSSHGSISATSPGSPELEVSVLRRELLMEKH
RNAHLEAELIKLRKSAVEISQQVEAEEECLINRMMKRLMELSRRKREDLA
LEVERRKSC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019152DUF2046