prot_A-nodosum_M_contig833.4.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig833.4.2
Unique Nameprot_A-nodosum_M_contig833.4.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length293
Homology
BLAST of mRNA_A-nodosum_M_contig833.4.2 vs. uniprot
Match: A0A6H5K1Z6_9PHAE (RRF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z6_9PHAE)

HSP 1 Score: 314 bits (804), Expect = 6.240e-104
Identity = 193/303 (63.70%), Postives = 223/303 (73.60%), Query Frame = 0
Query:    1 MAFRA-PYRHLVRLRETLTVSTAKICLT-TGPEAQLHLRAICTFPARPGVAATTAPPQSRLTPLRSTAPHKV-----LVGAVLSRRLKHGGKKGKGXXXXXXXHSP----EGDEEAESLDDIAGLSDTKGRFDKVLEGLKHDLQGLRGGKTDPAILDNIKVESYGSMSTLSSVAQASMKGPQLIVLSVYDPAMTNAVEDAVRECGMGLNPSSEGQGQVLVPIPKPTKESREAVAKMAAKHAEKSKVVLRGIRHKIQDHIKKNKDSFPEDEVHQRMKEIDKCTQEAEANANKMLEKKKAEILTV 292
            M+FR    RHL R+R+T T+S  +  +      A LH  A               PP SR  P R     +      L+G +   RLKHGGKKG  XXXXXXX +P    +G++ AESLDDIAG+ ++K RFDKVL+GL  + QGLRGGKTDP +LDN+KVESYGSM+ L+SVAQASMKGPQLI+LSVYDP MT A+EDAVRECGMGLNP SEGQGQV VPIPKPTKESREAVAK+AAKHAEKSKVV+RGIRHKI D IKK KDSFPED+VH R+KEIDKCT++AEA    MLEKKKAEILTV
Sbjct:    1 MSFRVLACRHLARVRKTATLSAPRKWIPMVESAASLHQHAAAAAGVMANHPKHRHPPFSR-PPQRHQQGRQQDGCASLIGQI---RLKHGGKKGNXXXXXXXXSAPSSTADGEDVAESLDDIAGIPESKARFDKVLQGLTRNFQGLRGGKTDPGMLDNVKVESYGSMTNLASVAQASMKGPQLIILSVYDPGMTKAIEDAVRECGMGLNPYSEGQGQVHVPIPKPTKESREAVAKVAAKHAEKSKVVVRGIRHKILDQIKKKKDSFPEDDVHMRIKEIDKCTKDAEAGIASMLEKKKAEILTV 299          
BLAST of mRNA_A-nodosum_M_contig833.4.2 vs. uniprot
Match: A0A836CM55_9STRA (Ribosome recycling factor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM55_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.040e-46
Identity = 99/200 (49.50%), Postives = 129/200 (64.50%), Query Frame = 0
Query:  102 DEEAESLDDIAGLSDTKGRFDKVLEGLKHDLQGLRGGKTDPAILDNIKVESYGSMSTLSSVAQASMKGPQLIVLSVYDPAMTNAVEDAVRECGMGLNPSSEGQG----------QVLVPIPKPTKESREAVAKMAAKHAEKSKVVLRGIRHKIQDHIKKNKDSFPEDEVHQRMKEIDKCTQEAEANANKMLEKKKAEILT 291
            D++  ++DD A L     R D+VLEGLK DL  LRGG+ DPA+ D++ V SYG    LSSVAQ S KGPQL+VL+ YDPA   AV  AVR+ GM LNP  +G             VLVPIPK + E+RE++ K+A K  EK+KV +RGIRHK+ + +KK+K +F ED+VH+R KEID      EA     L+ KK +IL+
Sbjct:  135 DQDYATVDDCAPLDALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILS 334          
BLAST of mRNA_A-nodosum_M_contig833.4.2 vs. uniprot
Match: A0A6V1LRG3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LRG3_HETAK)

HSP 1 Score: 129 bits (325), Expect = 2.830e-32
Identity = 71/179 (39.66%), Postives = 110/179 (61.45%), Query Frame = 0
Query:  112 AGLSDTKGRFDKVLEGLKHDLQGLRGGKTDPAILDNIKVESYGSMSTLSSVAQASMKGPQLIVLSVYDPAMTNAVEDAVRECGMGLNPSSEGQGQVLVPIPKPTKESREAVAKMAAKHAEKSKVVLRGIRHKIQDHIKKNKDSFPEDEVHQRMKEIDKCTQEAEANANKMLEKKKAEIL 290
            A L     +  + ++ L  DL+ LR G+ DPA+ D+++V++YG  + LS+VA  + +GPQL+V++VYDP +  AV+ A+RECGMGLNP +   G + VP+PK +KE RE +A+MA +  EK+K  +R  R    D  KK     PEDE  + +KEID          + +++ K+ E+L
Sbjct:   95 ADLEQVDQKMGRYIQALDKDLRTLRAGRADPAMFDHLQVDAYGQSAPLSAVADVAPRGPQLLVVNVYDPQLKGAVDTAIRECGMGLNPQALEGGALSVPVPKTSKEKREKLARMAKQQGEKTKQNVRNARRSAIDETKKA--GLPEDESKRLVKEIDALCDAKLKAVSDLIDGKQKELL 271          
BLAST of mRNA_A-nodosum_M_contig833.4.2 vs. uniprot
Match: A0A7S2KXT1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KXT1_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.290e-31
Identity = 76/195 (38.97%), Postives = 119/195 (61.03%), Query Frame = 0
Query:   99 PEGDEEAESLDDIAGLSDTKGRFDKVLEGLKHDLQGLRGGKTDPAILDNIKVESYGSMSTLSSVAQASMKGPQLIVLSVYDPAMTNAVEDAVRECGMGLNPSSEGQGQVLVPIPKPTKESREAVAKMAAKHAEKSKVVLRGIRHKIQDHIKKNKDS-FPEDEVHQRMKEIDKCTQEAEANANKMLEKKKAEILTV 292
            P+  EE E +D +    D K    +V+E +    + +RGG+    + +NI V++YG+ + L+ +AQ  + G   +VL+ YDP++ N V DAVR+ GM  NP  E +G+V+VPIPK +KE+RE ++K   K AE+++  +R IR    DHIKK KD+ F +DE  +  KEID  T++  A  N  +++KK  I+ V
Sbjct:  117 PKNQEEDEEVD-LPTQDDVKDEMMRVVESMLTSFKSIRGGEPSAELFENIMVDAYGTRTPLTGLAQVVVAGSNRVVLTPYDPSVANNVRDAVRDAGMSFNPQIE-EGEVIVPIPKVSKETREILSKKIGKMAEENRQRVRNIRRSYHDHIKKCKDAGFSKDETFRCSKEIDSVTEDVLAVLNDEVDRKKESIMQV 309          
BLAST of mRNA_A-nodosum_M_contig833.4.2 vs. uniprot
Match: R6HZC7_9PROT (Ribosome-recycling factor n=3 Tax=Azospirillum TaxID=191 RepID=R6HZC7_9PROT)

HSP 1 Score: 123 bits (309), Expect = 6.600e-31
Identity = 73/180 (40.56%), Postives = 112/180 (62.22%), Query Frame = 0
Query:  115 SDTKGRFDKVLEGLKHDLQGLRGGKTDPAILDNIKVESYGSMSTLSSVAQASMKGPQLIVLSVYDPAMTNAVEDAVRECGMGLNPSSEGQGQVLVPIPKPTKESREAVAKMAAKHAEKSKVVLRGIRHKIQDHIKKNK--DSFPEDEVHQRMKEIDKCTQEAEANANKMLEKKKAEILTV 292
            SD+K R DK +E L+ D   LR G+   ++LD I VE+YGSM+ LS V   S+  P+ + +S++D ++  AV+ A+RE  +GLNP+S+GQ  + +PIP  ++E R+ + K+A K+AE++KV +R IR    D +KK K  +   EDE  +   EI K T E+     +ML  K+ +IL V
Sbjct:    9 SDSKSRMDKTIETLRGDFGSLRAGRAHVSLLDGIMVEAYGSMTPLSQVGTVSVPDPRTLSISIWDRSLAKAVDKALRESDLGLNPASDGQ-LIRIPIPPLSEERRKELVKIAGKYAEQNKVAIRNIRRDALDDVKKLKKDNQISEDEEKRFENEIQKLTDESIKKIEEMLSAKEKDILQV 187          
BLAST of mRNA_A-nodosum_M_contig833.4.2 vs. uniprot
Match: UPI001BA79AAC (ribosome recycling factor n=1 Tax=Roseomonas terrae TaxID=424799 RepID=UPI001BA79AAC)

HSP 1 Score: 123 bits (308), Expect = 9.530e-31
Identity = 78/188 (41.49%), Postives = 114/188 (60.64%), Query Frame = 0
Query:  110 DIAGLS-DTKGRFDKVLEGLKHDLQGLRGGKTDPAILDNIKVESYGSMSTLSSVAQASMKGPQLIVLSVYDPAMTNAVEDAVRECGMGLNPSSEGQGQVLVPIPKPTKESREAVAKMAAKHAEKSKVVLRGIRH----KIQDHIKKNKDSFPEDEVHQRMKEIDKCTQEAEANANKMLEKKKAEILTV 292
            D A L  D   R D  +E LK + QGLR G+  PA+L+ ++VE+YGS++ L+ VA  S+ GP L+ + V+D  +T AVE A+RE  +GLNP +EGQ  + VP+P  T E R  + K AA++AE ++V +RG+R     + +  IKK++ S  EDEV Q   EI K T +     +  L  K+ +I TV
Sbjct:    4 DFAALKQDLTRRMDGAIETLKKEFQGLRTGRASPALLEPVRVEAYGSVTPLNQVANVSIAGPGLLSVQVWDKGLTKAVESAIREANLGLNPQAEGQ-VIRVPLPPLTAERRNELVKAAARYAESTRVAIRGVRRDGMEQAKGWIKKHEAS--EDEVKQAETEIQKLTDQYVKQVDASLVDKEKDIRTV 188          
BLAST of mRNA_A-nodosum_M_contig833.4.2 vs. uniprot
Match: UPI001A067563 (Ribosome recycling factor n=1 Tax=Acetobacteraceae bacterium H6797 TaxID=2571211 RepID=UPI001A067563)

HSP 1 Score: 120 bits (301), Expect = 1.030e-29
Identity = 77/186 (41.40%), Postives = 110/186 (59.14%), Query Frame = 0
Query:  110 DIAGL-SDTKGRFDKVLEGLKHDLQGLRGGKTDPAILDNIKVESYGSMSTLSSVAQASMKGPQLIVLSVYDPAMTNAVEDAVRECGMGLNPSSEGQGQVLVPIPKPTKESREAVAKMAAKHAEKSKVVLRGIRHKIQDHIK--KNKDSFPEDEVHQRMKEIDKCTQEAEANANKMLEKKKAEILTV 292
            DIA L SD   R D  LE LK +  GLR G+  PA+L+ I+VE+YGS   LS VA  S+ GP ++ + V+D ++T AVE A+R+ G+GLNP +EG   + VP+P  T E R  +AK AAK+AE +KV  RG+R    + IK  + K    +D+  +   E+ K T       +  L +K+ +I TV
Sbjct:    4 DIAALKSDLSRRMDGALETLKKEFSGLRTGRASPALLEPIRVEAYGSNQPLSQVANVSVSGPSMLSVQVWDKSVTKAVEVAIRDSGLGLNPQAEGT-VIRVPLPPLTTERRNELAKTAAKYAEAAKVAARGVRRDGMETIKGWEKKSEVGKDDAAKWSDEVQKLTDATIKAIDAALAEKEKDIKTV 188          
BLAST of mRNA_A-nodosum_M_contig833.4.2 vs. uniprot
Match: K9HKD2_9PROT (Ribosome-recycling factor n=2 Tax=Caenispirillum TaxID=414051 RepID=K9HKD2_9PROT)

HSP 1 Score: 120 bits (301), Expect = 1.120e-29
Identity = 72/179 (40.22%), Postives = 112/179 (62.57%), Query Frame = 0
Query:  116 DTKGRFDKVLEGLKHDLQGLRGGKTDPAILDNIKVESYGSMSTLSSVAQASMKGPQLIVLSVYDPAMTNAVEDAVRECGMGLNPSSEGQGQVLVPIPKPTKESREAVAKMAAKHAEKSKVVLRGIRHKIQDHIKK-NKD-SFPEDEVHQRMKEIDKCTQEAEANANKMLEKKKAEILTV 292
            D K R D+ +E LK +  GLR G+   ++LD + VE+YGS   L+ VA  S+  P+++V+SV+D +M  AVE A+R  G+GLNP++EGQ  + VPIP  T+E R  + K+AAK+ E ++V +R +R    D +KK  KD +  +DE     KE+ + T E  +  ++ L+ K+ EI+ V
Sbjct:   14 DLKHRMDQAVEVLKKEFAGLRTGRAHTSLLDPVVVEAYGSTMPLNQVANVSVPEPRMLVVSVWDRSMIKAVEKAIRNAGLGLNPAAEGQ-TIRVPIPPLTEERRAELTKVAAKYGENARVAVRNVRRDGMDQLKKMEKDGTISQDEQRAHEKEVQQLTDETISTIDETLKHKEQEIMQV 191          
BLAST of mRNA_A-nodosum_M_contig833.4.2 vs. uniprot
Match: A0A286H2T3_9PROT (Ribosome-recycling factor n=2 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286H2T3_9PROT)

HSP 1 Score: 119 bits (299), Expect = 2.210e-29
Identity = 71/179 (39.66%), Postives = 113/179 (63.13%), Query Frame = 0
Query:  116 DTKGRFDKVLEGLKHDLQGLRGGKTDPAILDNIKVESYGSMSTLSSVAQASMKGPQLIVLSVYDPAMTNAVEDAVRECGMGLNPSSEGQGQVLVPIPKPTKESREAVAKMAAKHAEKSKVVLRGIRHKIQDHIKK-NKDS-FPEDEVHQRMKEIDKCTQEAEANANKMLEKKKAEILTV 292
            D K R ++ +E LK +  GLR G+   ++LD + V++YGS   L+ VA  S+  P+++V+SV+D +MT AVE A+R+ G+GLNP++EGQ  + VPIP  T+E R  ++K+AAK+ E ++V +R +R    D +KK  KD    +DE      E+ + T EA    ++ L+ K+ EI+ V
Sbjct:   14 DLKHRMEQTVEVLKKEFAGLRTGRAHTSLLDPVVVDAYGSSMPLNQVANVSVPEPRMLVVSVWDRSMTKAVEKAIRDAGLGLNPAAEGQS-IRVPIPPLTEERRTELSKVAAKYTEAARVAIRNVRRDGMDSLKKMEKDGVISQDEHRTHSTEVQQLTDEAIKTVDETLKHKEQEIMQV 191          
BLAST of mRNA_A-nodosum_M_contig833.4.2 vs. uniprot
Match: A0A0U5F635_9PROT (Ribosome-recycling factor n=9 Tax=Acetobacter TaxID=434 RepID=A0A0U5F635_9PROT)

HSP 1 Score: 119 bits (298), Expect = 2.780e-29
Identity = 71/181 (39.23%), Postives = 107/181 (59.12%), Query Frame = 0
Query:  114 LSDTKGRFDKVLEGLKHDLQGLRGGKTDPAILDNIKVESYGSMSTLSSVAQASMKGPQLIVLSVYDPAMTNAVEDAVRECGMGLNPSSEGQGQVLVPIPKPTKESREAVAKMAAKHAEKSKVVLRGIRHKIQDHIK--KNKDSFPEDEVHQRMKEIDKCTQEAEANANKMLEKKKAEILTV 292
            L D K R D  LE L+ D  GLR G+  PA+L+ ++VE+YG    L+ VA  ++   ++I + V+D A+  AVE A+R+ G+GLNP+ EGQ  + VPIP+ T+E R  +AK AA++AE +K+ +RG+R    D  K  + K    +D+V      I K T +     + ML +K+ EI  V
Sbjct:    8 LDDLKRRMDGALESLRRDFSGLRSGRASPALLEPVRVEAYGGEVPLTQVASIAVPEARMITVQVWDRALAGAVERAIRDAGLGLNPAGEGQ-TIRVPIPQLTEERRNELAKAAARYAEGAKIAVRGVRRDGMDKTKGFEKKGEISQDDVKTWSDAIQKVTDQYVKKVDDMLAEKEKEIKQV 187          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig833.4.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1Z6_9PHAE6.240e-10463.70RRF domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CM55_9STRA1.040e-4649.50Ribosome recycling factor domain-containing protei... [more]
A0A6V1LRG3_HETAK2.830e-3239.66Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2KXT1_9STRA2.290e-3138.97Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
R6HZC7_9PROT6.600e-3140.56Ribosome-recycling factor n=3 Tax=Azospirillum Tax... [more]
UPI001BA79AAC9.530e-3141.49ribosome recycling factor n=1 Tax=Roseomonas terra... [more]
UPI001A0675631.030e-2941.40Ribosome recycling factor n=1 Tax=Acetobacteraceae... [more]
K9HKD2_9PROT1.120e-2940.22Ribosome-recycling factor n=2 Tax=Caenispirillum T... [more]
A0A286H2T3_9PROT2.210e-2939.66Ribosome-recycling factor n=2 Tax=Caenispirillum b... [more]
A0A0U5F635_9PROT2.780e-2939.23Ribosome-recycling factor n=9 Tax=Acetobacter TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1360.40coord: 139..214
e-value: 1.3E-49
score: 170.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..109
IPR023584Ribosome recycling factor domainPFAMPF01765RRFcoord: 128..290
e-value: 1.5E-46
score: 158.3
IPR036191RRF superfamilyGENE3D1.10.132.20coord: 118..289
e-value: 1.3E-49
score: 170.0
IPR036191RRF superfamilySUPERFAMILY55194Ribosome recycling factor, RRFcoord: 114..291
IPR002661Ribosome recycling factorPANTHERPTHR20982RIBOSOME RECYCLING FACTORcoord: 73..291

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig833contigA-nodosum_M_contig833:170470..176642 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig833.4.2mRNA_A-nodosum_M_contig833.4.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig833 170001..176642 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig833.4.2 ID=prot_A-nodosum_M_contig833.4.2|Name=mRNA_A-nodosum_M_contig833.4.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=293bp
MAFRAPYRHLVRLRETLTVSTAKICLTTGPEAQLHLRAICTFPARPGVAA
TTAPPQSRLTPLRSTAPHKVLVGAVLSRRLKHGGKKGKGGGKGRKGHSPE
GDEEAESLDDIAGLSDTKGRFDKVLEGLKHDLQGLRGGKTDPAILDNIKV
ESYGSMSTLSSVAQASMKGPQLIVLSVYDPAMTNAVEDAVRECGMGLNPS
SEGQGQVLVPIPKPTKESREAVAKMAAKHAEKSKVVLRGIRHKIQDHIKK
NKDSFPEDEVHQRMKEIDKCTQEAEANANKMLEKKKAEILTV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023584Ribosome_recyc_fac_dom
IPR036191RRF_sf
IPR002661Ribosome_recyc_fac