prot_A-nodosum_M_contig83.13.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig83.13.1
Unique Nameprot_A-nodosum_M_contig83.13.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length60
Homology
BLAST of mRNA_A-nodosum_M_contig83.13.1 vs. uniprot
Match: D8LEI8_ECTSI (Ubiquinol cytochrome c reductase subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI8_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.480e-28
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 0
Query:    2 GIREGCGETKPCASAMSEYKACIDRVEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 59
            GIR  CGET  C++ MSEYKAC++RV  KGFGTCEPWFFDY+SCVDKC APKIMK  K
Sbjct:   12 GIRATCGETTACSATMSEYKACVERVTSKGFGTCEPWFFDYISCVDKCAAPKIMKATK 69          
BLAST of mRNA_A-nodosum_M_contig83.13.1 vs. uniprot
Match: A0A6H5K2B5_9PHAE (UCR_hinge domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B5_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 7.130e-28
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 0
Query:    3 IREGCGETKPCASAMSEYKACIDRVEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 59
            IR  C ET  CA+AMSEYKAC++RV  KGFGTCEPWFFDY+SCVDKC APKIMKV K
Sbjct:   13 IRATCAETTACAAAMSEYKACVERVISKGFGTCEPWFFDYISCVDKCAAPKIMKVTK 69          
BLAST of mRNA_A-nodosum_M_contig83.13.1 vs. uniprot
Match: A0A5A8DS32_CAFRO (Cytochrome b-c1 complex subunit 6 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DS32_CAFRO)

HSP 1 Score: 68.2 bits (165), Expect = 7.310e-14
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0
Query:   13 CASAMSEYKACIDRVEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 59
            C     +Y+AC+ R+  KG G+CEPW FDY +CVDKC AP++  VLK
Sbjct:   21 CTGQWGKYEACVKRITAKGSGSCEPWAFDYWTCVDKCTAPRLFAVLK 67          
BLAST of mRNA_A-nodosum_M_contig83.13.1 vs. uniprot
Match: F0XZK5_AURAN (UCR_hinge domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZK5_AURAN)

HSP 1 Score: 66.6 bits (161), Expect = 2.970e-13
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 0
Query:    3 IREGCGETKPCASAMSEYKACIDRVEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 59
            +R+ C E K C  A   Y +C+DR+E KG G CEP++FD+L C+DKC  P IM+ LK
Sbjct:   13 MRKAC-EPK-CTDAYKAYLSCVDRIEAKGGGDCEPYYFDWLKCLDKCAMPHIMQKLK 67          
BLAST of mRNA_A-nodosum_M_contig83.13.1 vs. uniprot
Match: A0A0R3SCJ8_HYMDI (UCR_hinge domain-containing protein n=1 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A0R3SCJ8_HYMDI)

HSP 1 Score: 59.7 bits (143), Expect = 1.640e-10
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 0
Query:    3 IREGCGETKPCASAMSEYKACIDRVEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 59
            +R+ C ETK CA  +  +++C DR + K   +CE  F D + CVDKCV PK+ KVLK
Sbjct:   12 LRQECRETKECAKFVKLFESCSDR-QTKTKESCEEEFIDLIQCVDKCVGPKLFKVLK 67          
BLAST of mRNA_A-nodosum_M_contig83.13.1 vs. uniprot
Match: V4V6M9_CITCL (UCR_hinge domain-containing protein n=4 Tax=Citrus TaxID=2706 RepID=V4V6M9_CITCL)

HSP 1 Score: 58.2 bits (139), Expect = 1.650e-9
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 0
Query:    3 IREGCGETKP-CASAMSEYKACIDRVEKKGFGT--CEPWFFDYLSCVDKCVAPKIMKVLK 59
            + E C   KP C  ++ EY+AC+ R+E    G+  C   +FDYLSCVDKCVAPK+   LK
Sbjct:   49 LEEAC---KPKCVKSLIEYEACVKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFIQLK 105          
BLAST of mRNA_A-nodosum_M_contig83.13.1 vs. uniprot
Match: UPI001AD910EF (cytochrome b-c1 complex subunit 6-1, mitochondrial-like n=2 Tax=Rosoideae TaxID=171638 RepID=UPI001AD910EF)

HSP 1 Score: 57.0 bits (136), Expect = 2.010e-9
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 0
Query:   13 CASAMSEYKACIDRVE--KKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 59
            C   + EY+AC+ R+E    G+  C   +FDY+SCVDKCVAPK+   LK
Sbjct:   21 CVKPLIEYQACVKRIEGDDSGYKHCTGQYFDYISCVDKCVAPKLFGKLK 69          
BLAST of mRNA_A-nodosum_M_contig83.13.1 vs. uniprot
Match: A0A5J9UT90_9POAL (Cytochrome b-c1 complex subunit 6 n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UT90_9POAL)

HSP 1 Score: 57.0 bits (136), Expect = 2.430e-9
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 0
Query:   13 CASAMSEYKACIDRVEKKGFGT--CEPWFFDYLSCVDKCVAPKIMKVLK 59
            C   + EY+ C+ R+EK   G   C   +FDY SC+DKCVAPK++K LK
Sbjct:   29 CVKPLYEYERCVKRIEKDDTGHKHCTGQYFDYWSCIDKCVAPKLLKQLK 77          
BLAST of mRNA_A-nodosum_M_contig83.13.1 vs. uniprot
Match: A0A6J5VN54_PRUAR (Cytochrome b-c1 complex subunit 6 n=1 Tax=Prunus armeniaca TaxID=36596 RepID=A0A6J5VN54_PRUAR)

HSP 1 Score: 56.6 bits (135), Expect = 3.450e-9
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 0
Query:   13 CASAMSEYKACIDRVEKKGFGT--CEPWFFDYLSCVDKCVAPKIMKVLK 59
            C   + EY+AC+ RVE    G   C   +FDY+SCVDKCVAPK+   LK
Sbjct:   29 CVKPLIEYQACVKRVEADNNGDKHCTGQYFDYISCVDKCVAPKLFGALK 77          
BLAST of mRNA_A-nodosum_M_contig83.13.1 vs. uniprot
Match: UPI000E6F4D6A (cytochrome b-c1 complex subunit 6-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F4D6A)

HSP 1 Score: 56.2 bits (134), Expect = 3.850e-9
Identity = 28/58 (48.28%), Postives = 33/58 (56.90%), Query Frame = 0
Query:    3 IREGCGETKP-CASAMSEYKACIDRVEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 59
            + E C   KP C  A+ EYK C  R+E      C   +FDY SCVDKCVAPK+   LK
Sbjct:   13 LEESC---KPKCVKALLEYKNCTKRIEGDDTKHCTGQYFDYWSCVDKCVAPKLFSKLK 67          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig83.13.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEI8_ECTSI2.480e-2874.14Ubiquinol cytochrome c reductase subunit 6 n=1 Tax... [more]
A0A6H5K2B5_9PHAE7.130e-2877.19UCR_hinge domain-containing protein n=1 Tax=Ectoca... [more]
A0A5A8DS32_CAFRO7.310e-1453.19Cytochrome b-c1 complex subunit 6 n=1 Tax=Cafeteri... [more]
F0XZK5_AURAN2.970e-1350.88UCR_hinge domain-containing protein n=1 Tax=Aureoc... [more]
A0A0R3SCJ8_HYMDI1.640e-1047.37UCR_hinge domain-containing protein n=1 Tax=Hymeno... [more]
V4V6M9_CITCL1.650e-948.33UCR_hinge domain-containing protein n=4 Tax=Citrus... [more]
UPI001AD910EF2.010e-948.98cytochrome b-c1 complex subunit 6-1, mitochondrial... [more]
A0A5J9UT90_9POAL2.430e-948.98Cytochrome b-c1 complex subunit 6 n=1 Tax=Eragrost... [more]
A0A6J5VN54_PRUAR3.450e-951.02Cytochrome b-c1 complex subunit 6 n=1 Tax=Prunus a... [more]
UPI000E6F4D6A3.850e-948.28cytochrome b-c1 complex subunit 6-like n=1 Tax=Pap... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023184Ubiquinol-cytochrome C reductase hinge domainPFAMPF02320UCR_hingecoord: 3..59
e-value: 5.9E-17
score: 61.6
IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilyGENE3D1.10.287.20coord: 1..59
e-value: 4.2E-16
score: 60.8
IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilySUPERFAMILY81531Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 3..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig83contigA-nodosum_M_contig83:94169..96488 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig83.13.1mRNA_A-nodosum_M_contig83.13.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig83 92910..97961 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig83.13.1 ID=prot_A-nodosum_M_contig83.13.1|Name=mRNA_A-nodosum_M_contig83.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=60bp
MGIREGCGETKPCASAMSEYKACIDRVEKKGFGTCEPWFFDYLSCVDKCV
APKIMKVLK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023184Ubol_cytC_Rdtase_hinge_dom
IPR036811Ubol_cytC_Rdtase_hinge_dom_sf