prot_A-nodosum_M_contig826.21.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig826.21.1
Unique Nameprot_A-nodosum_M_contig826.21.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length197
Homology
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BLAST of mRNA_A-nodosum_M_contig826.21.1 vs. uniprot
Match: D8LFH3_ECTSI (Glucosylceramidase, family GH30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH3_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 3.760e-44
Identity = 91/204 (44.61%), Postives = 122/204 (59.80%), Query Frame = 0 
Query:    1 GHEATTYSCEGSVRQSWKLTASGMISLQDRYGALHDWFRPMCISRTIAHGSYECVHLVSCDSGEAGVFVHDPETGRLILQTNILYPPNDYPSIFPGADAGPGEGEKVSSKDLCLDVLDGSTEYGAVLTLAECG-------GGDKQEWVFKPVIVEDNGEGDDKGDINGENESGERGRNLVSGATGLCVTAGLPFFTGTAFEMNE 197
            G+EAT Y CEGSVRQSW+++A+G ISL D +GA +DWF+P+C+S+ I+  S++ V+LV CDS +AG FV+D ++GR+ LQ +   PP+  P     A+     G   S++ +CLDVLDGST+ G VLTL  C            Q W F      D G                 G +LVS ATG C+TAG PFFTG AFEM++
Sbjct:  531 GYEATLYGCEGSVRQSWEMSATGRISLADNFGAQYDWFQPLCLSKDISE-SFKSVNLVPCDSDQAGTFVYDQDSGRIALQADASSPPDADPQTVADAEDPVVSG---STESVCLDVLDGSTDDGVVLTLNPCDLESTSEDTSSGQRWEFAEAKSGDGG-----------------GGSLVSAATGRCMTAGWPFFTGAAFEMSD 713
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig826.21.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFH3_ECTSI3.760e-4444.61Glucosylceramidase, family GH30 n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.80.10.50coord: 1..141
e-value: 7.9E-9
score: 37.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..165
IPR000772Ricin B, lectin domainPROSITEPS50231RICIN_B_LECTINcoord: 1..143
score: 12.075
IPR000772Ricin B, lectin domainCDDcd00161RICINcoord: 111..142
e-value: 0.00602848
score: 33.6331
IPR035992Ricin B-like lectinsSUPERFAMILY50370Ricin B-like lectinscoord: 3..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig826contigA-nodosum_M_contig826:89915..91171 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig826.21.1mRNA_A-nodosum_M_contig826.21.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig826 89915..91172 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig826.21.1 ID=prot_A-nodosum_M_contig826.21.1|Name=mRNA_A-nodosum_M_contig826.21.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=197bp
GHEATTYSCEGSVRQSWKLTASGMISLQDRYGALHDWFRPMCISRTIAHG
SYECVHLVSCDSGEAGVFVHDPETGRLILQTNILYPPNDYPSIFPGADAG
PGEGEKVSSKDLCLDVLDGSTEYGAVLTLAECGGGDKQEWVFKPVIVEDN
GEGDDKGDINGENESGERGRNLVSGATGLCVTAGLPFFTGTAFEMNE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000772Ricin_B_lectin
IPR035992Ricin_B-like_lectins