prot_A-nodosum_M_contig825.31.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig825.31.2
Unique Nameprot_A-nodosum_M_contig825.31.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length500
Homology
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BLAST of mRNA_A-nodosum_M_contig825.31.2 vs. uniprot
Match: D8LKK6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKK6_ECTSI)

HSP 1 Score: 412 bits (1060), Expect = 2.490e-137
Identity = 292/452 (64.60%), Postives = 326/452 (72.12%), Query Frame = 0 
Query:   72 MYRVQETEEHSEDEDYEGPGKMDAFDRPAFKRRVIKNRAIQWALEDRKDFVKGGGMKYLGDK-TVQSSKYAIFKVDDQRSKTIEVTPIEQWWHFKKARKGEGKAMTVKEAEELMKKQENFMGPLSLANRVLGKKSLEAAERESAGMTRYGNLDHEDTQVLREAGVKLGGADDILERPKAGDGD-SDLDEFELERDDVESDAGGEDDDFGDEIRSDXXXXXXXXXXXXXXXXXXXXXXEDLNDS-DGYFTDDEHHDLQKLSRDVNAVG---TEEDEYTVGGDAGRASPTLPANGNPAAPLDPEPGSTAASG-----------------GSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRPKKMSKKAPQGVTQASVVATLKRYGGRLASKHVLREFVAVLKVDGKPNRPA-LALLRVLLKKVANKVDDAIDGTVWILKDHFS 499
            MYR QE EEHSEDEDYEGPGK DAF+RPAFKRR IK RAIQWALEDR+D  +GGG+KY GDK T Q S+YA FKVD  R +TIEVTPI++WW FKKA K  GK MTVKEAEELMKKQENF+GPLSLANR+LGKKSLEAA +E A  +RYG LDHEDTQVL+EAG+KL   +D       GDG  SD    E+E+ +V+SDAGGEDDDFGDE+RSDXXXXXXXXXXXXXXXXXXXXXX  LND  D + TDDEHH+LQKLSR VNA G    EED+YTV GD GRASPT+P  GNP     P  G+ A  G                 G             XXXXXXXXXXXXXXX   X  XX   KR +   KK  Q + QA+VVATLKRYGGRLASK +L  FVA LK DGK N+ A +A LR +LKKVA KVDDAI+GTVW+LK HFS
Sbjct:    1 MYREQEAEEHSEDEDYEGPGKFDAFERPAFKRRTIKTRAIQWALEDRRDHAQGGGIKYTGDKITQQMSRYATFKVDPNRPQTIEVTPIDEWWQFKKAPKDTGKNMTVKEAEELMKKQENFLGPLSLANRILGKKSLEAAAKEKAEQSRYGGLDHEDTQVLKEAGMKLASPEDTQAVDGFGDGSGSDGGAGEIEKGEVDSDAGGEDDDFGDEVRSDXXXXXXXXXXXXXXXXXXXXXXX-LNDXXDEHLTDDEHHELQKLSRSVNAEGGHVEEEDDYTVSGDIGRASPTVPPPGNP----KPAAGAPAGDGADXXXXXXXXXXXXXXXGKRGASAMEVGGGEXXXXXXXXXXXXXXXTGSXGEXXSGSKRARTAQKKGAQEINQANVVATLKRYGGRLASKALLGHFVAALKADGKKNKEAAVANLRAILKKVATKVDDAIEGTVWVLKKHFS 447
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig825.31.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKK6_ECTSI2.490e-13764.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..293
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 294..336
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..428
IPR011039Transcription Factor IIF, Rap30/Rap74, interactionSUPERFAMILY50916Rap30/74 interaction domainscoord: 102..187

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig825contigA-nodosum_M_contig825:289290..305148 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig825.31.2mRNA_A-nodosum_M_contig825.31.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig825 288754..308493 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig825.31.2 ID=prot_A-nodosum_M_contig825.31.2|Name=mRNA_A-nodosum_M_contig825.31.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=500bp
MNTKAAAIAAQRGEDEIISVEETVWSLRLGARNPPCNIAKFEEVWVNTGD
GKRKVTSPPFDDPALFTKPAYMYRVQETEEHSEDEDYEGPGKMDAFDRPA
FKRRVIKNRAIQWALEDRKDFVKGGGMKYLGDKTVQSSKYAIFKVDDQRS
KTIEVTPIEQWWHFKKARKGEGKAMTVKEAEELMKKQENFMGPLSLANRV
LGKKSLEAAERESAGMTRYGNLDHEDTQVLREAGVKLGGADDILERPKAG
DGDSDLDEFELERDDVESDAGGEDDDFGDEIRSDDEEEVPKDDANEEGGT
LHQQDDEDLNDSDGYFTDDEHHDLQKLSRDVNAVGTEEDEYTVGGDAGRA
SPTLPANGNPAAPLDPEPGSTAASGGSGGESGGVAGAKRGSSAISGEGAS
GPGGSGAGNGEGNGVKRPKKMSKKAPQGVTQASVVATLKRYGGRLASKHV
LREFVAVLKVDGKPNRPALALLRVLLKKVANKVDDAIDGTVWILKDHFS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011039TFIIF_interaction