prot_A-nodosum_M_contig8238.5.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8238.5.1
Unique Nameprot_A-nodosum_M_contig8238.5.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length173
Homology
BLAST of mRNA_A-nodosum_M_contig8238.5.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.560e-16
Identity = 52/124 (41.94%), Postives = 66/124 (53.23%), Query Frame = 0
Query:    2 GVCCVAECGTCGGSGCGSRGRADGLTAADCCVGRITDSNVFCDVSKAAPCII----ESASTCSNGVIGVEARGAXXXXXXXXXXXXXXXXXXXEAGLTADDCCVGRIMDSDVFCDDSGTAPCII 121
            GVCC  ECGTCGG+GCGSR    GLT  DCC   I + N  C V+K APC+I    E+  TCSNGV    A+G                      GL+ D+CC  +I  ++  CDD  +APC++
Sbjct:   35 GVCCPVECGTCGGTGCGSR---PGLTKYDCCTSTIKEDNHLCSVTKEAPCVIDEETEADPTCSNGV----AKG--DICCSAGCGYCGGTGCAGRGGLSGDECCTSKIAAANKSCDDQ-SAPCVM 148          
BLAST of mRNA_A-nodosum_M_contig8238.5.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.420e-9
Identity = 45/134 (33.58%), Postives = 59/134 (44.03%), Query Frame = 0
Query:    3 VCCVAECGTCGGSGCGSRGRADGLTAADCCVGRITDSNVFCDVSKAAPCIIESASTCSNGVIGVEARGAXXXXXXXXXXXXXXXXXXX---------EAGLTADDCCVGRIMDSDVFCDDSGTAPCIIEEPCGP 127
            VCC AECGTCGGSGCGSR    GLTA +CC   I  +NV C    +APC+++  ++ +         G+                              GLT  DCC   I +    C  +G APCI++    P
Sbjct:   96 VCCSAECGTCGGSGCGSRA---GLTANECCTSTIAAANVPCG---SAPCVVDGDTSPTXXXXXXXXSGSFTCDGVLKGDYCCSAGCVECGGSGCSDRGGGLTGADCCTSDISN---LCSVTGAAPCIVDGDTSP 220          
BLAST of mRNA_A-nodosum_M_contig8238.5.1 vs. uniprot
Match: A0A7S1IY02_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IY02_9EUGL)

HSP 1 Score: 62.4 bits (150), Expect = 3.640e-8
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    3 VCCVAECGTCGGSGCGSRGRADGLTAADCCVGRITDSNVFCDVSKAAPCII 53
            +CC A CGTCGG+GCGSR       AA+CCVG ITD+ ++CD +   PCI+
Sbjct:   54 ICCAASCGTCGGTGCGSRSGG----AANCCVGAITDAKLYCDETGGPPCIM 100          
BLAST of mRNA_A-nodosum_M_contig8238.5.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.460e-7
Identity = 32/71 (45.07%), Postives = 37/71 (52.11%), Query Frame = 0
Query:    1 SGVCCVAECGTCGGSGCGSRGRADGLTAADCCVGRITDSNVFCDVSKAAPCIIESASTCSNGVIGVEARGA 71
            SG CC   CGTCGG GC   G      A  CC   I  +   C    AAPCI+++  TCSNG+ G E  GA
Sbjct:  391 SGACCSVGCGTCGGEGCSQLGEG----AESCCTSNIIAAREPCSEKGAAPCIMDTDQTCSNGLAGFENSGA 457          
BLAST of mRNA_A-nodosum_M_contig8238.5.1 vs. uniprot
Match: A0A6H5J9S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9S1_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 9.970e-7
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 0
Query:    3 VCCVAECGTCGGSGCGSRGRADGLTAADCCVGRITDSNVFCDVSKAAPCIIESAS 57
            VCC AECG CGG GCGS     GL   +CC+  + D+   C V  AAPC+I+S +
Sbjct:   13 VCCTAECGQCGGEGCGS---VPGLDNTNCCINGVLDNQELCSVVGAAPCVIDSGN 64          
BLAST of mRNA_A-nodosum_M_contig8238.5.1 vs. uniprot
Match: D8LSQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ5_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.570e-6
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 0
Query:    3 VCCVAECGTCGGSGCGSRGRADGLTAADCCVGRITDSNVFCDVSKAAPCIIES 55
            VCC AECG CGG GCGS     GL   +CC+  + ++   C V+ AAPC+I+S
Sbjct:   60 VCCTAECGQCGGEGCGS---VPGLDNTNCCINGVLNNQELCSVAGAAPCVIDS 109          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8238.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JNF5_9PHAE4.560e-1641.94MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FWE8_ECTSI5.420e-933.58Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S1IY02_9EUGL3.640e-854.90Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
D7FY01_ECTSI1.460e-745.07Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5J9S1_9PHAE9.970e-749.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSQ5_ECTSI2.570e-649.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8238contigA-nodosum_M_contig8238:16575..18779 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8238.5.1mRNA_A-nodosum_M_contig8238.5.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8238 16575..18781 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8238.5.1 ID=prot_A-nodosum_M_contig8238.5.1|Name=mRNA_A-nodosum_M_contig8238.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=173bp
SGVCCVAECGTCGGSGCGSRGRADGLTAADCCVGRITDSNVFCDVSKAAP
CIIESASTCSNGVIGVEARGACCVAQCVTCGGAGCGMRAREAGLTADDCC
VGRIMDSDVFCDDSGTAPCIIEEPCGPALTITLEWSETASDLDLFVTEPG
GSIVSFASMVGSAGFLDMDVRSG
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