prot_A-nodosum_M_contig8.58.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8.58.1
Unique Nameprot_A-nodosum_M_contig8.58.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length306
Homology
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BLAST of mRNA_A-nodosum_M_contig8.58.1 vs. uniprot
Match: A0A6H5JYH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYH5_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 4.420e-30
Identity = 69/155 (44.52%), Postives = 93/155 (60.00%), Query Frame = 0 
Query:   24 TNAQDILRVVALSGLIRPEEVDIVCLNVCNACRES-VRYAITVNIHNAPDILSP--KYDSGNRSE--------------------RRTRLKHVRRISRLNFRMNFPLTEVVWPDDLHELKFGWAFNQPLESALPSSLLSLDLGGSFNHHVEEVIW 155
            T A  +LRVV LSG++ P EV++VCL++CNACRES   Y++ V   N   ++SP  + D G  S                       +R+   RRISRL FR++ PL++VVWP+ L  LKFGW F+ PL+  LP SL+ L LGG+FNHH+E V W
Sbjct:    4 TRAAGVLRVVVLSGVVWPAEVELVCLSICNACRESSTNYSMVVTAKNVR-LVSPSRRQDEGGASSPLPLCGGDINSDSAVPVIPAENSRVLPHRRISRLAFRVDLPLSQVVWPEGLRGLKFGWRFDHPLDHPLPDSLIDLHLGGTFNHHIEGVTW 157
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8.58.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYH5_9PHAE4.420e-3044.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 80..303
e-value: 3.1E-6
score: 27.9
IPR008615FNIPPFAMPF05725FNIPcoord: 146..188
e-value: 1.3E-4
score: 22.1
coord: 113..143
e-value: 8.7E-5
score: 22.6
NoneNo IPR availablePANTHERPTHR32134:SF92SUBFAMILY NOT NAMEDcoord: 168..245
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 112..180
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 200..280
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 132..203
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 168..245
NoneNo IPR availablePANTHERPTHR32134:SF92SUBFAMILY NOT NAMEDcoord: 132..203
NoneNo IPR availablePANTHERPTHR32134:SF92SUBFAMILY NOT NAMEDcoord: 200..280
coord: 112..180
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 108..279

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8contigA-nodosum_M_contig8:721008..721925 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8.58.1mRNA_A-nodosum_M_contig8.58.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8 720273..722596 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8.58.1 ID=prot_A-nodosum_M_contig8.58.1|Name=mRNA_A-nodosum_M_contig8.58.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=306bp
MNGTRCGSEGEAKNHPTGRMEIMTNAQDILRVVALSGLIRPEEVDIVCLN
VCNACRESVRYAITVNIHNAPDILSPKYDSGNRSERRTRLKHVRRISRLN
FRMNFPLTEVVWPDDLHELKFGWAFNQPLESALPSSLLSLDLGGSFNHHV
EEVIWPSQLVKLRFGDRFNRPIELAAWPSTLRSLTFGLSFNQPIEMVKWP
TALEYLALGDAFNHPVKATSWRATNLRKLEFGMAFRHPIDGMAWPEGLET
LTLGACFDQALDLQELPRSLKVLQLPDLYEMDGGDHTFRSGLPNLCKIEI
QEVLL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR008615FNIP