prot_A-nodosum_M_contig1237.5.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1237.5.2
Unique Nameprot_A-nodosum_M_contig1237.5.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length538
Homology
BLAST of mRNA_A-nodosum_M_contig1237.5.2 vs. uniprot
Match: D7FVI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI5_ECTSI)

HSP 1 Score: 384 bits (985), Expect = 1.780e-124
Identity = 200/327 (61.16%), Postives = 244/327 (74.62%), Query Frame = 0
Query:  110 LEGLSPDEVEERLIAAGILHRDGAV--FDVDELGGEGVYNEVDISDGSEACQILVDSLGFDETEINYLREKYAPLRGEPWYRREPTPG-SKVGKKVLDIYFLKETLPELLNLLLGDE-ENGGVGLSTEQVRGMLLRTPALAGVEPFDAGEVVSYMRGELGLDGKGQLAAALVGCPPMLMYNAQTNL-----------DKKVQYYRDALSWSTEDIRSLMAEYPNLLSVKMEEDVIEILEYLRSEIGLQPAMXXXXXXXXXXILDVRPKRLKAVVTYLRKVLDIPWGGVADILSHYPKTCSLEAEANLAPLRHFFERELFVEDSARIG 421
            LEGLS DEVE+RLIAAGIL  DGA   F+ D+ GG GVYNE+++SDG EACQIL + LGFDE  I +LR KY PLRGE WYRREP  G SK GKK LD+YF++ETLP+LL+LLLG+E E GGVGL  +QVR ML  TP+L G++  DA +V  Y+R ELGL GKGQLA+AL GCPPMLMY+   NL           D +V YYR++L+W+ ED+ +++AEYPNLLS+KME DVIE+++YLR+E+GLQP            +L+VRPKRLKAVV Y  KVL+IP  G+A +LS +P+TC LEAEANLAPLR FFERELFVE S   G
Sbjct:  153 LEGLSADEVEQRLIAAGILRGDGAEIDFEEDDGGGAGVYNEIEVSDGEEACQILEERLGFDEEGIAHLRSKYPPLRGELWYRREPASGGSKTGKKFLDVYFVEETLPDLLDLLLGEEGEGGGVGLDRKQVREMLTTTPSLVGMDVSDAKDVAGYLRSELGLSGKGQLASALAGCPPMLMYHTWDNLRMKYDNNDDGDDDQVSYYRESLAWTNEDVAAMLAEYPNLLSIKMENDVIEVIDYLRTEVGLQPLTVSGMVREFPQVLEVRPKRLKAVVRYFWKVLEIPRSGIAVLLSQHPRTCCLEAEANLAPLRQFFERELFVEASTVNG 479          
BLAST of mRNA_A-nodosum_M_contig1237.5.2 vs. uniprot
Match: A0A6H5JYV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV1_9PHAE)

HSP 1 Score: 348 bits (894), Expect = 1.830e-109
Identity = 214/405 (52.84%), Postives = 257/405 (63.46%), Query Frame = 0
Query:  110 LEGLSPDEVEERLIAAGILHRDGAV--FDVDELGGEGVYNEVDISDGSEACQILVDSLGFDETEINYLREKYAPLRGEPWYRREPTPG-SKVGKKVLDIYFLKETLPELLNLLLGDE-ENGGVGLSTEQVRGMLLRTPALAGVEPFDAGEVVSYMRGELGLDGKGQLAAALVGCPPMLMYNAQTNLDKKVQYYRDALSWSTEDIRSLMAEYPNLLSVKMEEDVIEILEYLRSEIGLQPAMXXXXXXXXXXILDVRPKRLKAVVTY------------------LRKVLDIPWGGVADILSHYPKTCSLEAEANLAPLRHFFERELFVEDSARIGRLVCKFPRLLFQDVETQLKPRAEEFRKALGLEGMEPVPPPVRSRPKRGNNRPGDAGLDSNGRGRVSARGFR 492
            LEGLS DEVE RLIAAGIL  DGA   FD D+ G  GVYNE+++SDG EAC+IL + LGFDE  I YLR KY PLRGE WYRREP  G SK GKK LD+YF++ETLP+LL+LLLG+E E GG+GL  +Q RG            P D+     +                              ++D  V YYR+AL+W++ED+ +++AEYPNLLS+KME DVIE+++            XXXXXXXXXX  +VRPKRLKAVV                    L  VL+IP  G+A +LS +P+ C LEAEANLAPLR FFERELFVED++RIG LV KFPRLLFQDV+TQL PRAEEFRKA+GLEG+EP+PP VR RPKR             GR R +  GFR
Sbjct:  229 LEGLSADEVERRLIAAGILRGDGAEIDFDEDDDGEAGVYNEIEVSDGEEACRILEERLGFDEEGIGYLRSKYPPLRGELWYRREPASGGSKTGKKFLDVYFVEETLPDLLDLLLGEEGEGGGIGLDRKQARG------------PADSSHSEQFWG----------------------------DVDADVSYYREALAWTSEDVAAMLAEYPNLLSIKMENDVIEVIDXXXXXXXXXXXXXXXXXXXXXXXXEVRPKRLKAVVRKKGTELELQAFESKEVLGTLSSVLEIPRSGIAVLLSQHPRACCLEAEANLAPLRQFFERELFVEDTSRIGHLVYKFPRLLFQDVDTQLVPRAEEFRKAMGLEGLEPLPPRVRLRPKRSK-------FSGAGRARGANSGFR 586          
BLAST of mRNA_A-nodosum_M_contig1237.5.2 vs. uniprot
Match: A0A835YN67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN67_9STRA)

HSP 1 Score: 174 bits (442), Expect = 4.080e-45
Identity = 118/363 (32.51%), Postives = 179/363 (49.31%), Query Frame = 0
Query:  150 DISDGSEACQILVDSLGFDETEINYLREKYAPLRGEPWYRREPTPGSKVGKKVLDIYFLKETLPELLNLLLGDEENGGVGLSTEQVRGMLLRTPALAGVEPFDAGEVVSYMRGELGLDGKGQLAAALVGCPPMLMYNAQTNLDKKVQYYRDALSWSTEDIRSLMAEYPNLLSVKME---EDVIEILEYLRSEIGLQPAMXXXXXXXXXXIL-DVRPKRLKAVVTYLRK------------------------------------VLDIPWGGVADILSHYPKTCSLEAEANLAPLRHFFERELFVEDSARIGRLVCKFPRLLFQDVETQLKPRAEEFRKALGLEGMEPVPPPVRSRPKRGNNR 472
            D   G+EA + L++ +G     +  L E++APLRGE WYRR      + GKKVLD+YFL++TLP+L+ LL   EE   +G S E++       P+L G E  +    + Y+R     +G G+L  AL  CP +L+Y+A+TNL  K  Y    L  +   +R LM +YP +  V      +  I  L+ L    G+   M          ++ + + KR+KA++ YL+K                                    VL +       ++  +P+   +EAE +LAPLRHFFE +L + D+ RIG +V K P++LF D+ET+L+P+A + R  LG+      P P   RP R   R
Sbjct:   58 DFDGGAEAQRFLIEDVGLAPAAVAALAERFAPLRGEMWYRR------RNGKKVLDVYFLEDTLPDLVELLEAPEE---LGWSQEEMAAAFAVVPSLLGREAAEVAASLRYVREXXXXEG-GELRGALSACPSLLLYDARTNLRAKHAYLTRHLGLTPAQLRELMLKYPRMFDVAFTGEGKSSIASLDVLLDS-GMTTHMACQLVVAEPELVAEAKGKRVKALMHYLQKWRRLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLKLEPEVATRLVCSHPRLLGMEAEKDLAPLRHFFEYDLCITDTRRIGSIVAKLPQILFMDLETELRPKAADIRAKLGIPDDAAPPRPRAPRPTRAEQR 409          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1237.5.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVI5_ECTSI1.780e-12461.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYV1_9PHAE1.830e-10952.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YN67_9STRA4.080e-4532.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 310..342
e-value: 0.39
score: 19.8
coord: 347..378
e-value: 2.2
score: 17.3
coord: 383..414
e-value: 2700.0
score: 0.5
coord: 273..305
e-value: 30.0
score: 13.5
coord: 421..453
e-value: 0.0024
score: 27.1
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 269..454
e-value: 1.4E-15
score: 57.1
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 377..454
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 156..371
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 225..380
e-value: 4.7E-21
score: 77.1
coord: 381..459
e-value: 3.3E-7
score: 31.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 486..502
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 450..537
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..39
NoneNo IPR availablePANTHERPTHR13068:SF5TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIALcoord: 156..371
coord: 377..454

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1237contigA-nodosum_M_contig1237:191004..197032 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1237.5.2mRNA_A-nodosum_M_contig1237.5.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1237 172839..197317 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1237.5.2 ID=prot_A-nodosum_M_contig1237.5.2|Name=mRNA_A-nodosum_M_contig1237.5.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=538bp
MADTTTKEKEWNPTTNVSGRVAGEKVQSAKREIPKNKMAEAKKGMLEAIK
ASMINQTEAKEDRGDIPSPVRIVSDYKVHADSDADADVDHVPASSDCTEI
IDKEENTPKLEGLSPDEVEERLIAAGILHRDGAVFDVDELGGEGVYNEVD
ISDGSEACQILVDSLGFDETEINYLREKYAPLRGEPWYRREPTPGSKVGK
KVLDIYFLKETLPELLNLLLGDEENGGVGLSTEQVRGMLLRTPALAGVEP
FDAGEVVSYMRGELGLDGKGQLAAALVGCPPMLMYNAQTNLDKKVQYYRD
ALSWSTEDIRSLMAEYPNLLSVKMEEDVIEILEYLRSEIGLQPAMVTAMV
REYPPILDVRPKRLKAVVTYLRKVLDIPWGGVADILSHYPKTCSLEAEAN
LAPLRHFFERELFVEDSARIGRLVCKFPRLLFQDVETQLKPRAEEFRKAL
GLEGMEPVPPPVRSRPKRGNNRPGDAGLDSNGRGRVSARGFRRKERSSGY
LGEERGNSRSGAGYRGQSRKDRSNGSGRGRAGGGRVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf