prot_A-nodosum_M_contig123.48.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig123.48.1
Unique Nameprot_A-nodosum_M_contig123.48.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length76
Homology
BLAST of mRNA_A-nodosum_M_contig123.48.1 vs. uniprot
Match: D7FR01_ECTSI (PC4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR01_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 4.720e-30
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = 0
Query:    3 DGSGVSNKIELGKNKFVDVREFKGMVLIDIREYYEAAGGEMKPGKKGIALNSEQWKVLKESMDDITSKIEEL 74
            DGSGVSNKIELG  KFVDVREFKG + +DIREYYE   GEM+PGKKGI+L++E W+VLKE+MDDI +K+EEL
Sbjct:   56 DGSGVSNKIELGNKKFVDVREFKGKIYVDIREYYEK-DGEMRPGKKGISLSTEHWEVLKENMDDINAKVEEL 126          
BLAST of mRNA_A-nodosum_M_contig123.48.1 vs. uniprot
Match: UPI0014259BD3 (activated RNA polymerase II transcriptional coactivator p15-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259BD3)

HSP 1 Score: 95.1 bits (235), Expect = 9.240e-24
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 0
Query:    9 NKIELGKNKFVDVREFKGMVLIDIREYYEAAGGEMKPGKKGIALNSEQWKVLKESMDDITSKIEELQ 75
            N+ EL + +FV+VREFKG VLIDIREYYEA GGEMKPGKKGI+L+ +QWK LKE +DD+   I+ELQ
Sbjct:   43 NRFELSRTRFVNVREFKGKVLIDIREYYEA-GGEMKPGKKGISLSVDQWKKLKEVVDDVDDSIKELQ 108          
BLAST of mRNA_A-nodosum_M_contig123.48.1 vs. uniprot
Match: A0A6F9DUN4_9ASCI (Activated RNA polymerase II transcriptional coactivator p15 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DUN4_9ASCI)

HSP 1 Score: 92.8 bits (229), Expect = 1.140e-22
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 0
Query:    6 GVSNKIELGKNKFVDVREFKGMVLIDIREYYEAAGGEMKPGKKGIALNSEQWKVLKESMDDITSKIEEL 74
            G   KI LGK KFV VREFKG +LIDIRE+YE   GEMKPGKKGI+L +EQW+ LK+S+DDI  KI +L
Sbjct:   55 GSDEKISLGKMKFVSVREFKGKILIDIREFYEN-NGEMKPGKKGISLQAEQWQKLKQSIDDIDEKIHQL 122          
BLAST of mRNA_A-nodosum_M_contig123.48.1 vs. uniprot
Match: A0A6P4Z2T7_BRABE (Activated RNA polymerase II transcriptional coactivator p15 n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4Z2T7_BRABE)

HSP 1 Score: 89.4 bits (220), Expect = 1.970e-21
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 0
Query:    8 SNKIELGKNKFVDVREFKGMVLIDIREYYEAAGGEMKPGKKGIALNSEQWKVLKESMDDITSKIEEL 74
            S+ I+L   ++V VREFKG  LIDIREYY+A GGE+KPGKKGI+L ++QW+ LKESMDDI  KI +L
Sbjct:   45 SDMIQLSNKRYVSVREFKGKCLIDIREYYDA-GGELKPGKKGISLTTDQWRRLKESMDDIDEKITDL 110          
BLAST of mRNA_A-nodosum_M_contig123.48.1 vs. uniprot
Match: A0A3P8VVN1_CYNSE (Activated RNA polymerase II transcriptional coactivator p15 n=2 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8VVN1_CYNSE)

HSP 1 Score: 89.7 bits (221), Expect = 1.970e-21
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 0
Query:    2 GDGSGVSNKIELGKNKFVDVREFKGMVLIDIREYYEAAGGEMKPGKKGIALNSEQWKVLKESMDDI 67
            G G+G  N  ++GK ++V VREFKG VLIDIREY+  A GEMKPGKKGI+LN EQW  LK  M DI
Sbjct:   53 GSGNGDDNMFQIGKMRYVSVREFKGKVLIDIREYWMNANGEMKPGKKGISLNPEQWNQLKHQMSDI 118          
BLAST of mRNA_A-nodosum_M_contig123.48.1 vs. uniprot
Match: A0A3Q3F4Y2_9LABR (Activated RNA polymerase II transcriptional coactivator p15 n=2 Tax=Labridae TaxID=8247 RepID=A0A3Q3F4Y2_9LABR)

HSP 1 Score: 87.0 bits (214), Expect = 2.270e-20
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 0
Query:    2 GDGSGVSNKIELGKNKFVDVREFKGMVLIDIREYYEAAGGEMKPGKKGIALNSEQWKVLKESMDDITSKI 71
            G G+G  N  ++GK ++V VR+FKG VL+DIREY+    GEMKPGKKGI+LN EQW  LK+ M DI   I
Sbjct:   53 GSGNGDDNMFQIGKMRYVSVRDFKGKVLVDIREYWMNPEGEMKPGKKGISLNPEQWNQLKDQMSDIEDAI 122          
BLAST of mRNA_A-nodosum_M_contig123.48.1 vs. uniprot
Match: UPI0016041207 (activated RNA polymerase II transcriptional coactivator p15-like isoform X2 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016041207)

HSP 1 Score: 86.7 bits (213), Expect = 2.340e-20
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 0
Query:    8 SNKIELGKNKFVDVREFKGMVLIDIREYYEAAGGEMKPGKKGIALNSEQWKVLKESMDDITSKIEEL 74
            S+ I+L   ++V VREFKG  LIDIREYY+A GGE+KPGKKGI+L ++QW+ LKE++DDI  KI +L
Sbjct:   46 SDMIQLSNKRYVSVREFKGKCLIDIREYYDA-GGELKPGKKGISLTTDQWRRLKEAVDDIDEKIADL 111          
BLAST of mRNA_A-nodosum_M_contig123.48.1 vs. uniprot
Match: A0A674MYM9_TAKRU (Activated RNA polymerase II transcriptional coactivator p15 n=4 Tax=Tetraodontidae TaxID=31031 RepID=A0A674MYM9_TAKRU)

HSP 1 Score: 86.3 bits (212), Expect = 4.570e-20
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 0
Query:    2 GDGSGVSNKIELGKNKFVDVREFKGMVLIDIREYYEAAGGEMKPGKKGIALNSEQWKVLKESMDDITSKIEEL 74
            G G+G  N  ++GK ++V VR+FKG VLIDIREY+    GEMKPGKKGI+LN EQW  LK+ + DI   I+++
Sbjct:   53 GSGNGDDNMFQIGKMRYVSVRDFKGKVLIDIREYWMNQDGEMKPGKKGISLNPEQWNQLKDQIADIDDAIKKI 125          
BLAST of mRNA_A-nodosum_M_contig123.48.1 vs. uniprot
Match: A0A5A9P917_9TELE (Activated RNA polymerase II transcriptional coactivator p15 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9P917_9TELE)

HSP 1 Score: 86.3 bits (212), Expect = 4.570e-20
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 0
Query:    3 DGSGVSNKIELGKNKFVDVREFKGMVLIDIREYYEAAGGEMKPGKKGIALNSEQWKVLKESMDDITSKI 71
            D S   N  ++GK K+V VR+FKG VLID+REY+    GEMKPGKKGI+LN EQW  LKE M DI   I
Sbjct:   54 DKSSEDNMFQIGKMKYVSVRDFKGKVLIDVREYWMDQAGEMKPGKKGISLNPEQWNQLKEQMPDIDDAI 122          
BLAST of mRNA_A-nodosum_M_contig123.48.1 vs. uniprot
Match: C3ZA15_BRAFL (Activated RNA polymerase II transcriptional coactivator p15 (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZA15_BRAFL)

HSP 1 Score: 84.3 bits (207), Expect = 5.250e-20
Identity = 39/64 (60.94%), Postives = 52/64 (81.25%), Query Frame = 0
Query:   11 IELGKNKFVDVREFKGMVLIDIREYYEAAGGEMKPGKKGIALNSEQWKVLKESMDDITSKIEEL 74
            ++L   ++V VREFKG  LIDIREYY+A GGE+KPGKKGI+L ++QW+ LKE++DDI  KI +L
Sbjct:    1 LQLSNKRYVSVREFKGKCLIDIREYYDA-GGELKPGKKGISLTTDQWRRLKEAVDDIDEKIADL 63          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig123.48.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR01_ECTSI4.720e-3073.61PC4 domain-containing protein n=2 Tax=Ectocarpus T... [more]
UPI0014259BD39.240e-2468.66activated RNA polymerase II transcriptional coacti... [more]
A0A6F9DUN4_9ASCI1.140e-2266.67Activated RNA polymerase II transcriptional coacti... [more]
A0A6P4Z2T7_BRABE1.970e-2164.18Activated RNA polymerase II transcriptional coacti... [more]
A0A3P8VVN1_CYNSE1.970e-2163.64Activated RNA polymerase II transcriptional coacti... [more]
A0A3Q3F4Y2_9LABR2.270e-2057.14Activated RNA polymerase II transcriptional coacti... [more]
UPI00160412072.340e-2061.19activated RNA polymerase II transcriptional coacti... [more]
A0A674MYM9_TAKRU4.570e-2054.79Activated RNA polymerase II transcriptional coacti... [more]
A0A5A9P917_9TELE4.570e-2059.42Activated RNA polymerase II transcriptional coacti... [more]
C3ZA15_BRAFL5.250e-2060.94Activated RNA polymerase II transcriptional coacti... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009044ssDNA-binding transcriptional regulatorGENE3D2.30.31.10Transcriptional Coactivator Pc4; Chain Acoord: 11..74
e-value: 1.2E-26
score: 94.2
IPR009044ssDNA-binding transcriptional regulatorSUPERFAMILY54447ssDNA-binding transcriptional regulator domaincoord: 11..74
IPR003173Transcriptional coactivator p15 (PC4), C-terminalPFAMPF02229PC4coord: 12..63
e-value: 6.1E-25
score: 86.6
IPR045125RNA polymerase II transcriptional coactivator Sub1/Tcp4-likePANTHERPTHR13215RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATORcoord: 11..74
NoneNo IPR availablePANTHERPTHR13215:SF0ACTIVATED RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR P15coord: 11..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig123contigA-nodosum_M_contig123:461932..465153 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig123.48.1mRNA_A-nodosum_M_contig123.48.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig123 437197..465726 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig123.48.1 ID=prot_A-nodosum_M_contig123.48.1|Name=mRNA_A-nodosum_M_contig123.48.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=76bp
MGDGSGVSNKIELGKNKFVDVREFKGMVLIDIREYYEAAGGEMKPGKKGI
ALNSEQWKVLKESMDDITSKIEELQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009044ssDNA-bd_transcriptional_reg
IPR003173PC4_C
IPR045125Sub1/Tcp4-like