prot_A-nodosum_M_contig1220.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1220.1.1
Unique Nameprot_A-nodosum_M_contig1220.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length95
Homology
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BLAST of mRNA_A-nodosum_M_contig1220.1.1 vs. uniprot
Match: A0A6H5K8E7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E7_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 5.710e-7
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 0 
Query:   53 SCVSCSKGKRKCDGLRPCSRCIRRDGGLACTYQTRKIHKP 92
            SC +C + KRKCDGL PCSRC+R   G+ CTY  RK H+P
Sbjct:   21 SCGACGRKKRKCDGLMPCSRCLR--AGVRCTYSKRKPHQP 58
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BLAST of mRNA_A-nodosum_M_contig1220.1.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 7.780e-7
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0 
Query:   53 SCVSCSKGKRKCDGLRPCSRCIRRDGGLACTYQTRKIHKP 92
            SC  C + KRKCDG+ PCSRC+R   G+ CTY  RK H+P
Sbjct:   21 SCCECGRKKRKCDGMAPCSRCLR--SGVQCTYSKRKPHQP 58
[Close]
BLAST of mRNA_A-nodosum_M_contig1220.1.1 vs. uniprot
Match: D8LU17_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU17_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 6.030e-5
Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 0 
Query:   53 SCVSCSKGKRKCDGLRPCSRCIRRDGGLACTYQTRKIHK 91
            SC  C + KRKCDGL PCSRC++   G  CTY  RK H+
Sbjct:   95 SCSECVRKKRKCDGLTPCSRCLK--AGARCTYTKRKWHQ 131
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1220.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K8E7_9PHAE5.710e-760.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JBJ1_9PHAE7.780e-757.50Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU17_ECTSI6.030e-556.41Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001138Zn(2)-C6 fungal-type DNA-binding domainSMARTSM00066gal4_2coord: 51..93
e-value: 0.005
score: 25.5
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPFAMPF00172Zn_cluscoord: 53..88
e-value: 2.4E-9
score: 37.2
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS00463ZN2_CY6_FUNGAL_1coord: 53..82
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS50048ZN2_CY6_FUNGAL_2coord: 53..84
score: 9.952
IPR001138Zn(2)-C6 fungal-type DNA-binding domainCDDcd00067GAL4coord: 53..84
e-value: 1.12948E-4
score: 34.5614
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilyGENE3D4.10.240.10coord: 53..84
e-value: 8.8E-8
score: 33.9
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 50..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1220contigA-nodosum_M_contig1220:12117..37349 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1220.1.1mRNA_A-nodosum_M_contig1220.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1220 12063..37349 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1220.1.1 ID=prot_A-nodosum_M_contig1220.1.1|Name=mRNA_A-nodosum_M_contig1220.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=95bp
MEGRYNIRVADKDIPADNGVGVERHDHGVLIMPSSNAKSHLEGTTPPCVW
NASCVSCSKGKRKCDGLRPCSRCIRRDGGLACTYQTRKIHKPHKP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
IPR036864Zn2-C6_fun-type_DNA-bd_sf