prot_A-nodosum_M_contig121.55.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig121.55.1
Unique Nameprot_A-nodosum_M_contig121.55.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length757
Homology
BLAST of mRNA_A-nodosum_M_contig121.55.1 vs. uniprot
Match: A0A6H5LIM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIM4_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 7.300e-85
Identity = 150/282 (53.19%), Postives = 203/282 (71.99%), Query Frame = 0
Query:  235 VKTVNGSSASKK--PKSSRASNDPTGREIFIDNLPLDITEASVQELAEEKGGTVAQMRLIKNKDKSSRSAPVALVRFVDPEDAQRALESIPREKIGTPLKKLGARASSNANTLFVGNLNKTWNKTQVLKHLENKMEGFVNFEVTADALSPHLNRGFGFITFCNVRACRAAHAKYHKNNLTIFGNVVMVDWADTKGCREEDERGVYVTNVDERVDESLFKDHFSKFGVVDKVVLGRTISHATRKDFAIVNFVTRKAAQKCVNEGSRTTLRGRVMEVTMAQSKR 514
             KT NG+SA+KK  PK  + S DP+G+EIFIDNLP   TE +V+++AEE+GG V  MR+I  KD+  + A +ALVRF + + A RALE +P  K+ +   KL AR SSNANTLF+GNLNKTW K  VLK  E +++G VNFEVT DAL+ +LNRGFGF TF +V +C+AAH KY+K+ LTI  N V++DWA+T+G +++DERGVY+T +DE+VDE+  + HF  +G + KVV+G  +  A RKDFAI+N+ T  AA+ C+     T    + +EVTMA+SKR
Sbjct:  188 AKTANGASAAKKDAPKP-KVSGDPSGKEIFIDNLPPSATEETVKKVAEEEGGEVVSMRVIMTKDEEPKCAGLALVRFQNRDHAARALERLPETKMES--NKLEARPSSNANTLFIGNLNKTWTKETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHTKYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEKVDEAALRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTADAAKTCIESMHGTDFMDKKLEVTMAKSKR 466          
BLAST of mRNA_A-nodosum_M_contig121.55.1 vs. uniprot
Match: D7FTF9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF9_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 2.660e-79
Identity = 152/321 (47.35%), Postives = 209/321 (65.11%), Query Frame = 0
Query:  235 VKTVNGSSASKK--PKSSRASNDPTGREIFIDNLPLDITEASVQELAEEKGGTVAQMRLIKNKDKSSRSAPVALVRFVDPEDAQRALESIPREKIGTPLKKLGARASSNANTLFVGNLNKTWNKTQ----------------------------VLKHLENKMEGFVNFEVTADALSPHLNRGFGFITFCNVRACRAAHAKYHKNNLTIFGNVVMVDWADTKGCREEDERGVYVTNVDERVDESLFKDHFSKFGVVDKVVLGRTISHATRKDFAIVNFVTRKAAQKCVNEGSRTTLRGRV---------MEVTMAQSKRKR 516
             KT NG+SA+KK  PK  + S DP+G+EIFIDNLP   TE +V+++AEE+GG V  MR++  KD+  + A +ALVRF + + A RALE +P  K+ +   KL AR+SSNANTLF+GNLNKTW K                              VLK  E +++G VNFEVT DAL+ +LNRGFGF TF +V +C+AAHAKY+K+ LTI  N V++DWA+T+G +++DERGVY+T +DE+VDE+  + HF  +G + KVV+G  +  A RKDFAI+N+   +AA+ C+     T   G++         +EVTMA+SKRKR
Sbjct:  225 AKTANGASAAKKDAPKP-KVSGDPSGKEIFIDNLPPSATEETVKKVAEEQGGEVVSMRVMMTKDEEPKCAGLALVRFQNRDHAARALERLPEIKMES--NKLEARSSSNANTLFIGNLNKTWTKXXXXXXXXXXXXXXXXXXXXXXXXXXKKETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSAAEAAKTCIESMHGTDFMGKLTVTSPAGRKLEVTMAKSKRKR 542          
BLAST of mRNA_A-nodosum_M_contig121.55.1 vs. uniprot
Match: A0A3S3NDE9_9MAGN (Nucleolin 2-like protein isoform X1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3NDE9_9MAGN)

HSP 1 Score: 128 bits (321), Expect = 6.940e-27
Identity = 88/258 (34.11%), Postives = 132/258 (51.16%), Query Frame = 0
Query:  242 SASKKPKSSRASNDPTGR--EIFIDNLPLDITEASVQELAEEKGGTVAQMRLIKNKDKSSRSAPVALVRFVDPEDAQRALESIPREKIGTPLKKLGARASSNANTLFVGNLNKTWNKTQVLKHLEN-KMEGFVNFEVTADALSPHLNRGFGFITFCNVRACRAAHAKYHKNNLTIFGNVVMVDWADTKGCREEDE----RGVYVTNVDERVDESLFKDHFSKFGVVDKVVLGRTISHATRKDFAIVNFVTRKAAQKCV 492
            +  ++ K +RAS     R  EIFI  L  D  E  ++++   K G V ++RL+KN  ++ ++   A +R+  P DA+RA+      K+    K+ GA       T+F+GN++KTW K  V+K L+   +E      V AD   P  NRGF FI     +  + A  K  K ++      + V WA+     +E+E    + VY   +    DE   K HF KFG +++V L R I  A RKDFAIVNF TR++A  C+
Sbjct:  290 AGEEEAKEARASERHLRRKTEIFIGGLDRDAREEDIRKVF-GKIGEVLEIRLMKN-SQTGKNKGYAFLRYASPADAKRAITEF--AKVEVCGKQCGAVPVEGNETIFLGNIDKTWKKEDVMKVLQEIGIENIDTVTVIADHNDPDCNRGFAFIELETNKDAQIAFKKLQKKDVFGKNRNIKVSWAEPLAQPDEEELLKVKSVYAEGIPSSWDEEKVKKHFKKFGDIERVALSRNIQSARRKDFAIVNFKTRESALSCI 543          
BLAST of mRNA_A-nodosum_M_contig121.55.1 vs. uniprot
Match: A0A0C9RL19_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_12905_2951 transcribed RNA sequence n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9RL19_9SPER)

HSP 1 Score: 119 bits (298), Expect = 4.190e-24
Identity = 76/238 (31.93%), Postives = 120/238 (50.42%), Query Frame = 0
Query:  260 EIFIDNLPLDITEASVQELAEEKGGTVAQMRLIKNKDKSSRSAPVALVRFVDPEDAQRALESIPREKIGTPLKKLGARASSNANTLFVGNLNKTWNKTQVLKHL-ENKMEGFVNFEVTADALSPHLNRGFGFITFCNVRACRAAHAKYHKNNLTIFGNVVMVDWADTKGCREEDE----RGVYVTNVDERVDESLFKDHFSKFGVVDKVVLGRTISHATRKDFAIVNFVTRKAAQKCV 492
            E+F+  L    TE  ++   +E G  + ++RL+K+  ++ ++   A VR+    +A+RA+  +   KI    KK G       +T+F+GN++KTW K  ++  L E  +E   N  V  D  +  LNRGFGF+     +  + A     K N+      V V WA      +ED     + V+V  +    +E   K+ F KFG ++KVVL R +  A RKDF  VN+ TR+AA  C+
Sbjct:  233 EVFVGGLEKSATEEDLRNAFKEVG-EITEIRLMKDLQQTGKNKGYAFVRYATAVEAKRAVTELANVKIRG--KKCGVVPLEENDTIFLGNIDKTWKKDDIINKLKEAGIEHIENVTVIEDPHNSQLNRGFGFLELETYKDAQVAFRALQKKNVFGKDKAVKVSWAQPLNEPDEDVMAQVKSVFVDGLPSTWNEEQVKEQFGKFGDIEKVVLSRNMQSAKRKDFGFVNYTTREAAISCI 467          
BLAST of mRNA_A-nodosum_M_contig121.55.1 vs. uniprot
Match: UPI0009E4819D (heterogeneous nuclear ribonucleoprotein Q-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E4819D)

HSP 1 Score: 111 bits (277), Expect = 6.160e-23
Identity = 63/190 (33.16%), Postives = 105/190 (55.26%), Query Frame = 0
Query:  332 KKLGARASSNANTLFVGNLNKTWNKTQVLKHL-ENKMEGFVNFEVTADALSPHLNRGFGFITFCNVRACRAAHAKYHKNNLTIFGNVVMVDWADTKGCREEDE----RGVYVTNVDERVDESLFKDHFSKFGVVDKVVLGRTISHATRKDFAIVNFVTRKAAQKCVNEGSRT--TLRGRVMEVTMAQSKR 514
            K  GA A    +T+F+GN++K W K  V+K L EN++E      V  D  + +LNRGF F+     R  + A+ K  +N++   G  + + WAD+    +E++    + VY   V +  +E   K+ F+K+G ++++VLGR I  A R+D A +N+ TR+AA  C+   S    T+ G  + + +A +KR
Sbjct:   15 KVCGAAAVQGNDTIFLGNIDKNWMKEDVMKLLKENEIENIDTLTVVMDPNNTNLNRGFAFLELKTNRDAQRAYKKLQRNDIVGKGRSIKIAWADSFNIPDEEDMLKVKSVYAEGVPDSWNEDRLKETFNKYGEIERIVLGRNIKSAKRRDIAFINYKTREAAISCIESFSSDDLTVNGSKVNLKVALAKR 204          
BLAST of mRNA_A-nodosum_M_contig121.55.1 vs. uniprot
Match: A0A835QRZ4_VANPL (Uncharacterized protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QRZ4_VANPL)

HSP 1 Score: 114 bits (285), Expect = 1.450e-22
Identity = 73/238 (30.67%), Postives = 126/238 (52.94%), Query Frame = 0
Query:  260 EIFIDNLPLDITEASVQELAEEKGGTVAQMRLIKNKDKSSRSAPVALVRFVDPEDAQRALESIPREKIGTPLKKLGARASSNANTLFVGNLNKTWNKTQVLKHLENK-MEGFVNFEVTADALSPHLNRGFGFITFCNVRACRAAHAKYHKNNLTIFGNVVMVDWADTKGCREEDE----RGVYVTNVDERVDESLFKDHFSKFGVVDKVVLGRTISHATRKDFAIVNFVTRKAAQKCV 492
            EIF+  L  D  E  ++ +   K G + ++R++ +  +S ++   A +R+ +P  A+RA+  + + +I    K  G  A    +T+F+GN++KTW K  V+K L+   +E      V  D  +  +NRGF F+        + A+ K  K ++   G  + V WAD+    +E+E    + VY   + +  +E   K+ F KFG +++VVLGR I  A R+DFA +N+  R+AA  C+
Sbjct:  295 EIFVGGLDRDAKEEDLRSVF-GKVGEILEVRMMID-GQSGKNKGYAFLRYAEPSFAKRAVAELAKVEICG--KVCGTAAVQGNDTIFLGNIDKTWKKEDVIKLLQEVGIENIDTVRVLVDPNNADVNRGFAFLELETNADAQRAYKKLQKKDVFGKGRNIKVAWADSFIVPDEEEMQKVKSVYAEGIPDSWNEDKLKETFKKFGEIERVVLGRNIKTAKRRDFAFINYANREAALSCI 528          
BLAST of mRNA_A-nodosum_M_contig121.55.1 vs. uniprot
Match: A0A4Y7IJN7_PAPSO (Uncharacterized protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7IJN7_PAPSO)

HSP 1 Score: 111 bits (278), Expect = 1.190e-21
Identity = 114/373 (30.56%), Postives = 173/373 (46.38%), Query Frame = 0
Query:  260 EIFIDNLPLDITEASVQELAEEKGGTVAQMRLIKNKDKSSRSAPVALVRFVDPEDAQRALESIPREKIGTPLKKLGARASSNANTLFVGNLNKTWNKTQVLKHLENK-MEGFVNFEVTADALSPHLNRGFGFITFCNVRACRAAHAKYHKNNLTIFGN--VVMVDWADTKGCREEDE-----RGVYVTNVDERVDESLFKDHFSKFGVVDKVVLGRTISHATRKDFAIVNFVTRKAAQKCVNEGSRTTL----RGRVMEVTMAQSKRKRTDFLHRERGGGGGGRGGNVGRGFHASRGG----GYQSHRRDDAYG--DSRGFMDGRGYGGDRERFSVPRPQF-------DGPSQAQGYHGGRRSGVYHPPPRGS 607
            E+F+  L  D TE  ++E+  E G  V ++RL+KN   + ++   A +RF   E A+RA+  +    I    K+ G   S +++TLFVGN+ KTW K  + + L +  ++ F +  +  D  +  +NRGF F+ F   R       K+ +    +FG      + +ADT     +DE     R V++  +    DE   KDH  KFG ++KV L R +  A RKDF  V F T  AA  CV   + T L    +   + V +++ +++     H        G+GG V RG   +RGG        HR +  +     RGF     YGGD +RF  PR ++       D     +GY    RS  Y P P  S
Sbjct:  171 EVFVGGLDRDATEEDLREVFSEVG-EVTEVRLMKN-PLTQKNKGFAFLRFATVEQAKRAVSELKNPTING--KQFGVAPSQDSDTLFVGNICKTWTKEALKEKLIHYGVDNFEDLTLVEDTRNEGMNRGFAFLDF-GSRPDALDACKHLQKRDVLFGTDRPAKIAFADTF-IEMDDEVMAQVRAVFLDGLPISWDEDRVKDHLKKFGKIEKVELARNMPAAKRKDFGFVTFDTHDAAVACVEGVNNTELGDGDKKIKVRVRLSRPRQRGKSVKH--------GQGGYVERG--GARGGRPFWNPSLHRTESRFAARSGRGFQSYSSYGGDYKRFG-PRDRYADMDISRDRVVSRRGYPSSERS--YDPRPSAS 524          
BLAST of mRNA_A-nodosum_M_contig121.55.1 vs. uniprot
Match: UPI000C1D772B (nucleolin 2-like isoform X1 n=14 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D772B)

HSP 1 Score: 112 bits (279), Expect = 1.200e-21
Identity = 81/260 (31.15%), Postives = 133/260 (51.15%), Query Frame = 0
Query:  260 EIFIDNLPLDITEASVQELAEEKGGTVAQMRLIKNKDKSSRSAPVALVRFVDPEDAQRALESIPREKIGTPLKKLGARASSNANTLFVGNLNKTWNKTQVLKHLENK-MEGFVNFEVTADALSPHLNRGFGFITFCNVRACRAAHAKYHKNNLTIFGN--VVMVDWADTKGCREEDE----RGVYVTNVDERVDESLFKDHFSKFGVVDKVVLGRTISHATRKDFAIVNFVTRKAAQKCVNEGSRTTLRGRVMEVTMAQS 512
            EIF+  L  +  E  ++++ EE  G + ++RL  NK K+ ++   A V+F    DA+ AL +  + +I    K+ GA      +T+F+GN+NKTW    ++K LE   +E      + AD  +   NRGF F+ F   +  + A  K  KN+  IFG    + V+WA       E+E    + VY   +    DE   K++F +FG ++ VVL + +  + RKDFA +N+ +R+AA  C+   +R   +    +V M  S
Sbjct:  457 EIFVGGLDKETKEDDIKKVFEE-AGEIVEVRLTMNK-KTGKNKGFAFVQFATAADAKNALTNYSKVEICG--KQCGAAPVEGNDTIFLGNINKTWKIDDIVKLLEKSGIEKIDGVTIKADPNNMKNNRGFAFVEFERPKDAQIAFHKLQKND--IFGKDLKIKVEWAQPLNEPAEEEILKVKTVYAEYLPSLWDEENVKEYFKRFGKIENVVLAKDLPASRRKDFAFINYSSREAALTCIETVNRDKEKDDSTKVKMRVS 710          
BLAST of mRNA_A-nodosum_M_contig121.55.1 vs. uniprot
Match: A9T4Q6_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T4Q6_PHYPA)

HSP 1 Score: 104 bits (260), Expect = 6.440e-21
Identity = 77/248 (31.05%), Postives = 127/248 (51.21%), Query Frame = 0
Query:  260 EIFIDNLPLDITEASVQELAEEKGGTVAQMRLIKNKDKSSRSAPVALVRFVDPEDAQRALESIPREKIGTPLKKLGARASSNANTLFVGNLNKTWNKTQVLKHLENK-MEGFVNFEVTADALSPHLNRGFGFITFCNVRACRAAHAKYHKNNLTIFG--NVVMVDWADTKGCREEDE----RGVYVTNVDERVDESLFKDHFSKFGVVDKVVLGRTISHATRKDFAIVNFVTRKAAQKCVNEGSRTTL 500
            E+++  L  D TE  ++ L  EK G V ++RL++N  ++ ++   A VR+     A+RA E +   +I    ++  A+ S   +TL +GN+NK+W K  V++ L++  +E      +  D     LNRGF FI F   +    A  K  + +  IFG      V WA      +ED     + V+V  +    +E   ++HF K+G ++++VL R +  A RKDF  VNFV R AA  C++  + T +
Sbjct:   53 EVYVGGLDKDTTEEDLKPLF-EKAGEVVEVRLMRN-PQTGKNRGYAFVRYSSAAMAKRAAEELGTIEIRG--RECTAKPSEENDTLHLGNINKSWKKEMVMETLKSLCIERIEELTLMEDPQVEGLNRGFAFIEFSTHKDALEAFRKLQQPD-AIFGADRSAKVAWAQPLYEPDEDTMSQVKSVFVDGMPPTWEEVNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNFVERDAALACIDALNNTEI 295          
BLAST of mRNA_A-nodosum_M_contig121.55.1 vs. uniprot
Match: A0A251T9A0_HELAN (Putative nucleotide-binding alpha-beta plait domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T9A0_HELAN)

HSP 1 Score: 108 bits (271), Expect = 8.630e-21
Identity = 80/242 (33.06%), Postives = 124/242 (51.24%), Query Frame = 0
Query:  260 EIFIDNLPLDITEASVQELAEEKGGTVAQMRLIKNKDKSSRSAPVALVRFVDPEDAQRALESIPREKIGTPLKKLGARASSNANTLFVGNLNKTWNKTQVLKHLENK-MEGFVNFEVTADALSPHLNRGFGFITFCNVRACRAAHAKYHKNNLTIFGN--VVMVDWADTKGCREEDE-----RGVYVTNVDERVDESLFKDHFSKFGVVDKVVLGRTISHATRKDFAIVNFVTRKAAQKCVN 493
            E+F+  L  D TE  ++E+  + G  + ++RL+ N   ++++   A +RF   E A+RAL    R  I    K+ G   S +++TLFVGN+ KTW+K  + + L    ++ F    +  DA S  LNRGF F+ F        A  +  K ++ IFG      V +ADT     +DE     R V+V  +    +E + KDH  +FG ++KV L R +  A R DF  + F T +AA  CV+
Sbjct:  177 EVFVGGLDRDTTEVDLREVFSQVGD-ITEVRLLMN-PMTNKNKGFAFIRFATVEQARRALNDFKRPTIKG--KQCGVAPSQDSDTLFVGNICKTWSKDMLKEKLVRYGIDKFEELTLVEDAKSEGLNRGFAFLDFPTRADALEACRRLQKRDV-IFGTDRTARVAFADTF-IEPDDEIMAQVRTVFVDGLPPSWEEDIIKDHLRQFGKIEKVELARNMPAAKRDDFGFITFSTHEAAVSCVD 412          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig121.55.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LIM4_9PHAE7.300e-8553.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTF9_ECTSI2.660e-7947.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A3S3NDE9_9MAGN6.940e-2734.11Nucleolin 2-like protein isoform X1 n=1 Tax=Cinnam... [more]
A0A0C9RL19_9SPER4.190e-2431.93TSA: Wollemia nobilis Ref_Wollemi_Transcript_12905... [more]
UPI0009E4819D6.160e-2333.16heterogeneous nuclear ribonucleoprotein Q-like n=1... [more]
A0A835QRZ4_VANPL1.450e-2230.67Uncharacterized protein n=2 Tax=Vanilla planifolia... [more]
A0A4Y7IJN7_PAPSO1.190e-2130.56Uncharacterized protein n=3 Tax=Papaver somniferum... [more]
UPI000C1D772B1.200e-2131.15nucleolin 2-like isoform X1 n=14 Tax=Olea europaea... [more]
A9T4Q6_PHYPA6.440e-2131.05Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A251T9A0_HELAN8.630e-2133.06Putative nucleotide-binding alpha-beta plait domai... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 435..508
e-value: 3.9E-10
score: 49.7
coord: 260..334
e-value: 1.3E-7
score: 41.3
coord: 344..421
e-value: 2.4E-7
score: 40.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 261..328
e-value: 3.5E-9
score: 36.4
coord: 436..505
e-value: 2.7E-11
score: 43.1
coord: 345..409
e-value: 2.8E-5
score: 23.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 434..512
score: 12.833221
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 259..338
score: 12.884388
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 343..425
score: 10.598964
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 342..424
e-value: 1.7E-14
score: 55.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 425..542
e-value: 5.0E-17
score: 64.2
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 188..332
e-value: 7.0E-13
score: 50.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..256
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 521..613
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..234
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 740..756
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 716..756
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 546..578
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..260
NoneNo IPR availablePANTHERPTHR21245HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEINcoord: 35..699
NoneNo IPR availableCDDcd00590RRM_SFcoord: 261..328
e-value: 1.64607E-9
score: 52.6925
NoneNo IPR availableCDDcd00590RRM_SFcoord: 436..507
e-value: 1.84429E-13
score: 63.8633
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 342..515
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 256..378

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig121contigA-nodosum_M_contig121:698901..709843 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig121.55.1mRNA_A-nodosum_M_contig121.55.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig121 698625..713141 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig121.55.1 ID=prot_A-nodosum_M_contig121.55.1|Name=mRNA_A-nodosum_M_contig121.55.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=757bp
MVDDMVEESEATVKAEEESGESVSAPEKAVEAEAAAEPETGEEAAAKPNM
EVEAAAKPKTEAEAIVKEDMREGEAAKPDTEAEEAVKVKEEEGAEAAPEP
ATAQTVSVTPKPEPMDEDENETKPEPADGAPSGTVSASNETAETAVPDET
KASVEPGRTDVASQPSPKSPRASGKPSAASAGKGKPARSPEKTPSVSNRR
AKANKTKVEKMETLEKDDDDAASVGGDEEPPAKKVKTVNGSSASKKPKSS
RASNDPTGREIFIDNLPLDITEASVQELAEEKGGTVAQMRLIKNKDKSSR
SAPVALVRFVDPEDAQRALESIPREKIGTPLKKLGARASSNANTLFVGNL
NKTWNKTQVLKHLENKMEGFVNFEVTADALSPHLNRGFGFITFCNVRACR
AAHAKYHKNNLTIFGNVVMVDWADTKGCREEDERGVYVTNVDERVDESLF
KDHFSKFGVVDKVVLGRTISHATRKDFAIVNFVTRKAAQKCVNEGSRTTL
RGRVMEVTMAQSKRKRTDFLHRERGGGGGGRGGNVGRGFHASRGGGYQSH
RRDDAYGDSRGFMDGRGYGGDRERFSVPRPQFDGPSQAQGYHGGRRSGVY
HPPPRGSRDLPSQDFPLRQMIPPQQMGLPQQMVQPQQQMVQPHQIISAQQ
MIQPQQQMIQPQQMMVQPQQQMVQPQQMIPQQQQQMMSPQQQMPPQQHMA
SQQQMAPQQQMALQQQIAQPFSPQPVAFQPYVAGGAGAGGVTSPQQQQQG
WQQRLF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf