prot_A-nodosum_M_contig1208.13.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1208.13.1
Unique Nameprot_A-nodosum_M_contig1208.13.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length799
Homology
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BLAST of mRNA_A-nodosum_M_contig1208.13.1 vs. uniprot
Match: D8LL59_ECTSI (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL59_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 1.250e-40
Identity = 108/279 (38.71%), Postives = 147/279 (52.69%), Query Frame = 0 
Query:  359 SGESRGKHLA-VEPRPA--PVLQFHANMKDVDENEKFSHCTLCAMCGLSPPEGNPLSLCRGCPRIFCSKCLPK--------------KCRGA--------KPVKCPRC--PGDEQFPPAPPDVEPMMHLLEELIEHDLSQSFR------KHPEYMKTAVRS--MNLGTMVDKLKSGKYSGRRAWGHFQKDCSLIWENCRYYNDCDELGLPEEGTIIPGVVRCALVLEAMARRFYLPYLPNQNDSGAENPLGSSPMDLQTWDTHRQRVQQAKAEERLKQV 602
            SG +  + L+  EP+    PVL+     ++  E ++ SH   CA C  S PEG+P+  C  CPR FCS+CL +               CR             +CP C    D +F P PP   PM HLL EL+ HDLS  FR      KHP+Y+++  R+  M+LGTM+ KL+  +Y  RR  G FQ+D + IW NCR +  CDELG P  G  +PG+VRCAL LEAM+ +F   Y+ +  ++ A            TWD HRQR ++  AE R KQ+
Sbjct:  299 SGPAAAESLSPAEPQAVLLPVLRQITEGREGAE-DRSSHLMDCASCQHSLPEGDPIGRCERCPRSFCSQCLERGLVEQGVELEALGQDCRSLLNGKQGDISIARCPECFRGKDNEFAPPPPGGAPMDHLLSELLRHDLSLCFREPVDIVKHPDYVESIGRNAMMDLGTMLSKLQGKRYPRRRGPGQFQEDLNRIWRNCRRFAGCDELGRPHYGNTVPGIVRCALTLEAMSDKFISSYMSDNQETAAWQES--------TWDFHRQRQERENAEARRKQL 568
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1208.13.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL59_ECTSI1.250e-4038.71Bromo domain-containing protein n=2 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 59..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 279..297
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 239..255
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 279..342
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 663..774
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..259
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 694..715
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 734..767
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..132
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 453..555
e-value: 1.5E-11
score: 45.9
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 446..528
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 459..526
e-value: 4.9E-9
score: 36.1
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 449..532
score: 10.484

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1208contigA-nodosum_M_contig1208:112825..115626 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1208.13.1mRNA_A-nodosum_M_contig1208.13.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1208 111627..118773 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1208.13.1 ID=prot_A-nodosum_M_contig1208.13.1|Name=mRNA_A-nodosum_M_contig1208.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=799bp
MRSAFDIVRESKEERRDSSKGDIAQGITQASLAQWGMGKGNHPPDVVHKQ
GDREEDKEVAALRLENAILKAEVDGLRATVAVLTTATRHLPCLRCGESRA
APEDKASKTQEARSIPTDFGSMKWSTPTRPPEESGDHSTDVHSASDVEPA
PAHPSPQTTTGGRGQAQPTGSAQHVGSAESSHWSASVAPVCAPAPARVSS
SQLGDDSRTESAQRIEAQGPLEAQVPRPMLESGACSKRHSKSPVRTTSPS
EPDESRLTAPRTDFCAKCWPLLTKSTLPKTAREAGSQETSGVGSWSQSFA
KHARGKGKQTNGDRSTIGSRKAQQPRARSLKGHAAPGKAEEIRETARISI
NRACRDTCSGESRGKHLAVEPRPAPVLQFHANMKDVDENEKFSHCTLCAM
CGLSPPEGNPLSLCRGCPRIFCSKCLPKKCRGAKPVKCPRCPGDEQFPPA
PPDVEPMMHLLEELIEHDLSQSFRKHPEYMKTAVRSMNLGTMVDKLKSGK
YSGRRAWGHFQKDCSLIWENCRYYNDCDELGLPEEGTIIPGVVRCALVLE
AMARRFYLPYLPNQNDSGAENPLGSSPMDLQTWDTHRQRVQQAKAEERLK
QVAGSQHRCSNRMAAGAVSRGDICSASESTTGRLGAIASGSARGKEKSED
SCFKQIGNKRRDCAGKSSTDHGLASQEKQRAARREVMVDGMQRTNPNRAW
NGVESGTSCDHVTQKGSTDGVAGPGRWADPSQVGQRALQPSRSVKGPSPG
TDPWTTEATTNRKRLSSFAQPAPAKRTKWRLLDQLGDVAYGFPKKINK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036427Bromodomain-like_sf
IPR001487Bromodomain