prot_A-nodosum_M_contig1192.9.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1192.9.2
Unique Nameprot_A-nodosum_M_contig1192.9.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length383
Homology
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BLAST of mRNA_A-nodosum_M_contig1192.9.2 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.160e-15
Identity = 50/97 (51.55%), Postives = 57/97 (58.76%), Query Frame = 0 
Query:  287 STLDEETDGFGPSNITGCSFDGNTATDGGAIYTAAGYDMVVNSSFTKNFAAAQGGALLHSGVLVALTGCIFESNMAGKDGLAVMSLGIAEEIADLLF 383
            S  D++  G G  N T C F GN+A DGGA+Y+AAGYD + +  F  N A   GGA LHSGVLV L    F  N A   GLAV SLGIA  I D  F
Sbjct:  439 SLFDDDDPGSGSVNATMCVFQGNSAVDGGAMYSAAGYDGIKDCRFEDNLAVGSGGAYLHSGVLVELDRSTFVGNRARDAGLAVQSLGIAGNITDTTF 535
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BLAST of mRNA_A-nodosum_M_contig1192.9.2 vs. uniprot
Match: D7FPF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF6_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 3.990e-13
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 0 
Query:  291 EETDGFGPSNITGCSFDGNTATDGGAIYTAAGYDMVVNSSFTKNFAAAQGGALLHSGVLVALTGCIFESNMAGKDGLAVMSL 372
            E  D  GP+N T C F+ N+A DGGAIY+AAGYD++ +S F  N A    GA LHSG+LV+L    F  N AG  GLAV SL
Sbjct:  399 ESPDDSGPANTTTCVFERNSAEDGGAIYSAAGYDIISDSWFEDNIAVGSRGAYLHSGLLVSLADTTFVGNRAGAAGLAVASL 480
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BLAST of mRNA_A-nodosum_M_contig1192.9.2 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 3.270e-11
Identity = 42/90 (46.67%), Postives = 50/90 (55.56%), Query Frame = 0 
Query:  294 DGFGPSNITGCSFDGNTATDGGAIYTAAGYDMVVNSSFTKNFAAAQGGALLHSGVLVALTGCIFESNMAGKDGLAVMSLGIAEEIADLLF 383
            +G GP N T C F+ N+A DGGA Y+AAGYD+V + SF  NFAA  GGALLHSGVLV +                     IAE   D+ F
Sbjct:  219 EGSGPVNTTACVFERNSADDGGAFYSAAGYDLVQDCSFQANFAALSGGALLHSGVLVGVHXXXXXXXXXXXXXXXXXXXXIAENFTDVTF 308
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1192.9.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWI3_9PHAE2.160e-1551.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPF6_ECTSI3.990e-1353.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUB6_ECTSI3.270e-1146.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 151..168
e-value: 5.4E-4
score: 17.7
coord: 97..117
e-value: 2.6E-4
score: 18.7
coord: 125..144
e-value: 7.1E-5
score: 20.5
coord: 304..320
e-value: 0.0012
score: 16.6
coord: 181..199
e-value: 6.2E-5
score: 20.7
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 98..115
e-value: 0.038
score: 14.5
coord: 182..197
e-value: 0.093
score: 13.2
coord: 304..319
e-value: 0.014
score: 15.8
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 299..370

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1192contigA-nodosum_M_contig1192:54405..67061 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1192.9.2mRNA_A-nodosum_M_contig1192.9.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1192 54405..98524 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1192.9.2 ID=prot_A-nodosum_M_contig1192.9.2|Name=mRNA_A-nodosum_M_contig1192.9.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=383bp
MEVSYIYTTKCFQQLRHCVVVSNHARFGGAIYLITESVFNNYGTASFVSN
EAENFAGAFFAHIHSNASFGGKVVFASNTARFGGAMLFFESKFNFIGSVS
FEGNHADYYGGAVYADDDGNALFGGEAVFANNTAEYGGAISAEDTELNFI
GNVSFEENHANTSGGAIALYGGSIIHVDGMTSFVGNEATDSGGAIYASDS
SVFVGRGTLFMFNIASTGSGGGVYASNSVMSLNEAVFTKNCGVWGGGVAF
FSSGSILDKGIGDAGSFSYASILYEEDNAVPYFPADSTLDEETDGFGPSN
ITGCSFDGNTATDGGAIYTAAGYDMVVNSSFTKNFAAAQGGALLHSGVLV
ALTGCIFESNMAGKDGLAVMSLGIAEEIADLLF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence