prot_A-nodosum_M_contig117.49.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig117.49.1
Unique Nameprot_A-nodosum_M_contig117.49.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length330
Homology
BLAST of mRNA_A-nodosum_M_contig117.49.1 vs. uniprot
Match: D8LJC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC8_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 2.220e-38
Identity = 77/107 (71.96%), Postives = 94/107 (87.85%), Query Frame = 0
Query:    1 MVSSGVVLEADVRVPQGTVGVTRGGELKGRVVAKEFLLEDGGRLDGDVECDFAVIEGYLKGSLVSREVSTIGPSALFDGDVIYNVLELDKGAVITGRLFSIRSTASN 107
            +VS GV + ADV VP  TV VTRGG+L GR+VAKEFLLEDGGR++G+VECDFAVIEG L+ SLVS+E++T+GPSA  +GDVIYNVLELD+GA+ITGRLFSIRST ++
Sbjct: 1464 VVSRGVSVTADVHVPFATVAVTRGGKLCGRIVAKEFLLEDGGRVEGEVECDFAVIEGSLEASLVSKEMATVGPSASINGDVIYNVLELDRGAIITGRLFSIRSTTAD 1570          
BLAST of mRNA_A-nodosum_M_contig117.49.1 vs. uniprot
Match: A0A6H5JGI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGI3_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.060e-37
Identity = 83/141 (58.87%), Postives = 102/141 (72.34%), Query Frame = 0
Query:    1 MVSSGVVLEADVRVPQGTVGVTRGGELKGRVVAKEFLLEDGGRLDGDVECDFAVIEGYLKGSLVSREVSTIGPSALFDGDVIYNVLELDKGAVITGRLFSIRSTASNVLQDQ---------DRPVTDANIIKQRRLQHELR 132
            +VS GV + ADV VP  TV VTRGG+L GR+VAKEFLLEDGGR++G+VEC FAVIEG L+ SLVS+E++T+GPSA  +GDVIYNVLELD+GA+ITGRLFSIR + ++               RP       KQ RL+ ELR
Sbjct: 2001 VVSRGVSVTADVHVPFATVAVTRGGKLCGRIVAKEFLLEDGGRVEGEVECHFAVIEGSLEASLVSKEMATVGPSASINGDVIYNVLELDRGAIITGRLFSIRPSTADASSSSCPVPWGGLVSRPWQQEEEAKQLRLERELR 2141          
BLAST of mRNA_A-nodosum_M_contig117.49.1 vs. uniprot
Match: A0A6S6SYG5_9GAMM (Protein CcmA, bactofilin family n=1 Tax=uncultured Thiotrichaceae bacterium TaxID=298394 RepID=A0A6S6SYG5_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 1.610e-5
Identity = 30/103 (29.13%), Postives = 57/103 (55.34%), Query Frame = 0
Query:    1 MVSSGVVLEADVRVPQGTVGVTR-GGELKGRVVAKE----FLLEDGGRLDGDVECDFAVIEGYLKGSLVSREVSTIGPSALFDGDVIYNVLELDKGAVITGRL 98
            ++ +   L+ D+       GV R  GE+ G +V +      +L D G++ G+++ D  ++ G ++G++   E   + P+A   GDV YN+LE++ GA + GR+
Sbjct:   29 LIGASTTLQGDINFS----GVMRVDGEIHGNIVGENSNSILILSDNGKIIGELKVDNLIVNGAIEGNVYIGEKIELYPNAKITGDVHYNLLEMEVGAEVNGRM 127          
BLAST of mRNA_A-nodosum_M_contig117.49.1 vs. uniprot
Match: A0A0K2ZXR8_XANCT (Uncharacterized protein n=16 Tax=Xanthomonas TaxID=338 RepID=A0A0K2ZXR8_XANCT)

HSP 1 Score: 53.5 bits (127), Expect = 3.860e-5
Identity = 28/87 (32.18%), Postives = 48/87 (55.17%), Query Frame = 0
Query:   25 GELKGRVVAKE-----FLLEDGGRLDGDVECDFAVIEGYLKGSLVSREVSTIGPSALFDGDVIYNVLELDKGAVITGRLFSIRSTAS 106
            G + G+V+A++       L + G ++G+V     +I G L G + + E   + P A   G+V Y V+E++ GA +TGRL  + S A+
Sbjct:   40 GRILGKVLAEDGAPATLTLSEHGSIEGEVRAPIVIINGQLTGDVHAAERVELAPKARVQGNVHYQVVEMNAGAQLTGRLIHVGSMAA 126          
BLAST of mRNA_A-nodosum_M_contig117.49.1 vs. uniprot
Match: G8QMF5_AZOOP (Integral membrane protein CcmA involved in cell shape determination n=4 Tax=Betaproteobacteria TaxID=28216 RepID=G8QMF5_AZOOP)

HSP 1 Score: 52.8 bits (125), Expect = 5.380e-5
Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 0
Query:    1 MVSSGVVLEADVRVPQGTVGVTRGGELKGRVVAKE-----FLLEDGGRLDGDVECDFAVIEGYLKGSLVSREVSTIGPSALFDGDVIYNVLELDKGAVITGRL 98
            ++ +G  LE +V   Q + G+   GE+KG V A +      ++ +  R++G +     VI G + G + + E   + P A   GDV YN LE+ +GAV+ GRL
Sbjct:   19 LIGAGTRLEGNV---QFSGGLRIDGEIKGNVEAAQDQPSTLVVSEHARIEGVINVAHVVINGTVIGPVHATETLELQPCAKVTGDVEYNSLEMQQGAVVQGRL 118          
BLAST of mRNA_A-nodosum_M_contig117.49.1 vs. uniprot
Match: A0A7V1MZI2_9BACT (Polymer-forming cytoskeletal protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V1MZI2_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 7.630e-5
Identity = 26/70 (37.14%), Postives = 44/70 (62.86%), Query Frame = 0
Query:   25 GELKGRVVAK-EFLLEDGGRLDGDVECDFAVIEGYLKGSLVSREVSTIGPSALFDGDVIYNVLELDKGAV 93
            G + G++  K + +L   G +DG++ C+ AVI+G  KG L   ++ T+  +A+ DGDVI + L ++ GAV
Sbjct:   48 GMVSGKIECKGKLILGPKGNVDGEIICENAVIDGTFKGKLKVNDLLTVRETAVIDGDVITDQLNVESGAV 117          
BLAST of mRNA_A-nodosum_M_contig117.49.1 vs. uniprot
Match: A0A3R8UAF0_9GAMM (Polymer-forming cytoskeletal family protein n=1 Tax=Stenotrophomonas sp. 278 TaxID=2479851 RepID=A0A3R8UAF0_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 7.810e-5
Identity = 31/104 (29.81%), Postives = 57/104 (54.81%), Query Frame = 0
Query:    1 MVSSGVVLEADVRVPQGTVGVTRGGELKGRVVAKE------FLLEDGGRLDGDVECDFAVIEGYLKGSLVSREVSTIGPSALFDGDVIYNVLELDKGAVITGRL 98
            ++ + VV+  DV     + G+   G + G+V+A E        L + G ++G++     V+ G L+G + + E   + PSA  +G++ Y V+E++ GA +TGRL
Sbjct:   18 LIGAQVVIRGDVEF---SGGLYVEGTILGKVIASEGASTATLTLAEQGSIEGEIRAQVVVLSGRLEGDVHASERVELTPSARVNGNIHYQVVEMNAGAQLTGRL 118          
BLAST of mRNA_A-nodosum_M_contig117.49.1 vs. uniprot
Match: UPI00197CEB71 (polymer-forming cytoskeletal protein n=1 Tax=Xanthomonas sp. AmX2 TaxID=2810352 RepID=UPI00197CEB71)

HSP 1 Score: 52.4 bits (124), Expect = 9.560e-5
Identity = 30/87 (34.48%), Postives = 47/87 (54.02%), Query Frame = 0
Query:   25 GELKGRVVAKE-----FLLEDGGRLDGDVECDFAVIEGYLKGSLVSREVSTIGPSALFDGDVIYNVLELDKGAVITGRLFSIRSTAS 106
            G + G+VVA++       L + G ++G+V     VI G L G + + E   + P A   G+V Y V+E++ GA +TGRL    S A+
Sbjct:   39 GRILGKVVAEDGAAATLTLSEHGSIEGEVRAPIVVINGQLIGDVHAGERVELAPKARVQGNVHYQVVEMNAGAQLTGRLIHTGSMAA 125          
BLAST of mRNA_A-nodosum_M_contig117.49.1 vs. uniprot
Match: D2UBA8_XANAP (Uncharacterized protein n=6 Tax=Xanthomonas TaxID=338 RepID=D2UBA8_XANAP)

HSP 1 Score: 52.4 bits (124), Expect = 9.730e-5
Identity = 30/87 (34.48%), Postives = 47/87 (54.02%), Query Frame = 0
Query:   25 GELKGRVVAKE-----FLLEDGGRLDGDVECDFAVIEGYLKGSLVSREVSTIGPSALFDGDVIYNVLELDKGAVITGRLFSIRSTAS 106
            G + G+V+A+E       L + G ++G+V     VI G L G + + E   + P A   G+V Y V+E++ GA +TGRL    S A+
Sbjct:   38 GRILGKVMAEEGVPAMLTLSEHGTIEGEVRAPVVVINGQLIGDVHATERVELAPKARVQGNVHYQVVEMNAGAQLTGRLIHAGSIAA 124          
BLAST of mRNA_A-nodosum_M_contig117.49.1 vs. uniprot
Match: A0A1G0DPP7_9PROT (Cell shape determination protein CcmA n=2 Tax=unclassified Nitrosomonadales TaxID=1660158 RepID=A0A1G0DPP7_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 9.820e-5
Identity = 30/112 (26.79%), Postives = 57/112 (50.89%), Query Frame = 0
Query:    1 MVSSGVVLEADVRVPQGTVGVTRGGELKGRVVAKE-----FLLEDGGRLDGDVECDFAVIEGYLKGSLVSREVSTIGPSALFDGDVIYNVLELDKGAVITGRLFSIRSTASN 107
            ++ SG  +E ++     + G+   G++ G V+A +      +L +  R++G+V     V+ G + G + + E   +   A  +GDV YN LE+  GA++ GRL    + A +
Sbjct:   16 LIGSGTTIEGNLNF---SGGMRIDGQVNGNVIAAQGKQTTLVLSEHARVNGEVNVTHLVVNGTISGPVSASEYLELQGKAKVNGDVHYNTLEIQLGAIVEGRLIHCDAAAQD 124          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig117.49.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LJC8_ECTSI2.220e-3871.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGI3_9PHAE1.060e-3758.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S6SYG5_9GAMM1.610e-529.13Protein CcmA, bactofilin family n=1 Tax=uncultured... [more]
A0A0K2ZXR8_XANCT3.860e-532.18Uncharacterized protein n=16 Tax=Xanthomonas TaxID... [more]
G8QMF5_AZOOP5.380e-533.01Integral membrane protein CcmA involved in cell sh... [more]
A0A7V1MZI2_9BACT7.630e-537.14Polymer-forming cytoskeletal protein n=1 Tax=Bacte... [more]
A0A3R8UAF0_9GAMM7.810e-529.81Polymer-forming cytoskeletal family protein n=1 Ta... [more]
UPI00197CEB719.560e-534.48polymer-forming cytoskeletal protein n=1 Tax=Xanth... [more]
D2UBA8_XANAP9.730e-534.48Uncharacterized protein n=6 Tax=Xanthomonas TaxID=... [more]
A0A1G0DPP7_9PROT9.820e-526.79Cell shape determination protein CcmA n=2 Tax=uncl... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007607Bactofilin A/BPFAMPF04519Bactofilincoord: 2..98
e-value: 1.9E-11
score: 44.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 273..307
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 286..307
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..167

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig117contigA-nodosum_M_contig117:720274..725898 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig117.49.1mRNA_A-nodosum_M_contig117.49.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig117 719526..725969 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig117.49.1 ID=prot_A-nodosum_M_contig117.49.1|Name=mRNA_A-nodosum_M_contig117.49.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=330bp
MVSSGVVLEADVRVPQGTVGVTRGGELKGRVVAKEFLLEDGGRLDGDVEC
DFAVIEGYLKGSLVSREVSTIGPSALFDGDVIYNVLELDKGAVITGRLFS
IRSTASNVLQDQDRPVTDANIIKQRRLQHELRQRQRVGQRGLDAPAPSSR
LDYDYDDDDRSKENPSLTGVDRRIVAAGSSKPSPVKTLMTSSMTSSMASL
LMSGERRAFSGSDISGGSNKNASARRGEDDISGISGAAKGGFGALSGLWG
TMLEGMAWARALSDAPAAAAAATSAATNNSTASAHQLEEEHPRHRSGDHS
GERFQQSSIRDAKIKQVWIRAAERRAQIA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007607BacA/B