prot_A-nodosum_M_contig1167.23.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1167.23.1
Unique Nameprot_A-nodosum_M_contig1167.23.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length273
Homology
BLAST of mRNA_A-nodosum_M_contig1167.23.1 vs. uniprot
Match: A0A6H5JW72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW72_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 3.310e-65
Identity = 98/166 (59.04%), Postives = 127/166 (76.51%), Query Frame = 0
Query:   41 GDLGCQTLESMKGNIEFKWDAPRTMRMGISGAFILAPMSLTWNLCAERVAPGRSLRAVLIKMGISMGVIPPMIGIQFTSLTLMEGGKSMEDVQHKLFRDLTPTIKNAYCYWPVVSVMNTLFVSVINRPAMSSFAGVFWNIYMSYQANHNGLDLGEVSEVLPLVEAE 206
            GD  CQ +E+     +F WD  RTMRMGI+GAF + P S  WN+ AER+APGRSLRAV+ K+G+S+ V+PPM+  QF SLTL+E GK+M DV+ KL RD TPT+KNA  +WPVVSV+N+ FV V++RP  SSF GVFWN+Y+SYQANHNG+++GE+S V P  + E
Sbjct:   38 GDALCQAMETFGTERKFAWDHTRTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVMTKLGVSVAVLPPMLAAQFASLTLLEEGKTMGDVRTKLSRDFTPTLKNAILFWPVVSVINSTFVPVLSRPVFSSFVGVFWNVYISYQANHNGMEVGELSVVYPAEQKE 203          
BLAST of mRNA_A-nodosum_M_contig1167.23.1 vs. uniprot
Match: D7G038_ECTSI (Integral membrane protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G038_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 3.440e-62
Identity = 94/159 (59.12%), Postives = 123/159 (77.36%), Query Frame = 0
Query:   48 LESMKGNIEFKWDAPRTMRMGISGAFILAPMSLTWNLCAERVAPGRSLRAVLIKMGISMGVIPPMIGIQFTSLTLMEGGKSMEDVQHKLFRDLTPTIKNAYCYWPVVSVMNTLFVSVINRPAMSSFAGVFWNIYMSYQANHNGLDLGEVSEVLPLVEAE 206
            +E+     +F WD  RTMRMGI+GAF + P S  WN+ AER+APGRSLRAV+ K+G+S+ V+PPM+  QF SLTL+E GK+M DV+ KL RD TPT+KNA  +WPVVSV+N+ FV V++RP  SSF GVFWN+Y+SYQANHNG+++GE+S V P  + E
Sbjct:    1 METFGTERKFAWDHARTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVVTKLGVSVAVLPPMLAAQFASLTLLEEGKTMGDVRTKLSRDFTPTLKNAILFWPVVSVINSAFVPVLSRPVFSSFVGVFWNVYISYQANHNGMEVGELSVVYPTEQKE 159          
BLAST of mRNA_A-nodosum_M_contig1167.23.1 vs. uniprot
Match: A0A835ZBN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBN1_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.410e-39
Identity = 70/151 (46.36%), Postives = 102/151 (67.55%), Query Frame = 0
Query:   41 GDLGCQTLESMKGNIEFKWDAPRTMRMGISGAFILAPMSLTWNLCAERVAPGRSLRAVLIKMGISMGVIPPMIGIQFTSLTLMEGGKSMEDVQHKLFRDLTPTIKNAYCYWPVVSVMNTLFVSVINRPAMSSFAGVFWNIYMSYQANHNGL 191
            GD+ CQ +E+    + +KW+  RT R+  +G F+L P+S+ WN  AER+ PGR ++A+L K+ + +  +PPMI IQF S+TLMEG K  + V  K+ +DL  T     CYWP V ++N+ FV V NRP + SFAG+FWNIY+S++AN + L
Sbjct:   35 GDVACQVMEA-DDKLHWKWNMARTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAVQLLCMPPMISIQFASMTLMEG-KGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKANESDL 183          
BLAST of mRNA_A-nodosum_M_contig1167.23.1 vs. uniprot
Match: A0A813WUK2_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813WUK2_9BILA)

HSP 1 Score: 88.2 bits (217), Expect = 4.530e-17
Identity = 54/159 (33.96%), Postives = 83/159 (52.20%), Query Frame = 0
Query:   41 GDLGCQTLESMK------------GNIEFKWDAPRTMRMGISGAFILAPMSLTWNLCAERVAPGRSLRAVLIKMGISMGVIPPMIGIQFTSLTLMEGGKSMEDVQHKLFRDLTPTIKNAYCYWPVVSVMNTLFVSVINRPAMSSFAGVFWNIYMSYQAN 187
            GDL CQ LE  K              +E+ W++ RT+ M  S   +  P S T     ER+ PG+    +  KM  +  + P  I + FTS+ L++G +S E+++ K+   +  T     CYWP VS +N  ++ +  RP + +FAG+FWNIY+S  AN
Sbjct:   37 GDLMCQYLERHKTTAQKDKGSDNASGLEW-WNSQRTLIMCTSAVLVSTPYSFTLARTVERLFPGKQGIQIAKKMLTNTLMGPVGISLAFTSIGLLKG-QSFEEIKLKIVHHMPQTFLLGNCYWPFVSFINFRYIPLNYRPFLGTFAGMFWNIYVSTIAN 193          
BLAST of mRNA_A-nodosum_M_contig1167.23.1 vs. uniprot
Match: A0A0L0G1N2_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G1N2_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 4.660e-13
Identity = 48/157 (30.57%), Postives = 81/157 (51.59%), Query Frame = 0
Query:   41 GDLGCQTLE-----SMKGNIEFK------WDAPRTMRMGISGAFILAPMSLTWNLCAERVAPGRSLRAVLIKMGISMGVIPPMIGIQFTSLTLMEGGKSMEDVQHKLFRDLTPTIKNAYCYWPVVSVMNTLFVSVINRPAMSSFAGVFWNIYMSYQA 186
            GD+ CQ LE     S +  ++ K      +D  RT  M ++GA I  P+        ER+ PG S+RAV++K  I++ +  P++     S ++   GKS  +++ K+  D  PT      +WP V+++   FV +  R +  + AG  W+ Y+SYQ+
Sbjct:   21 GDVFCQNLEHKQLVSQRDELQNKANNVQVYDYARTAAMALTGAAITGPLVHLMVASNERIYPGNSVRAVIVKASINL-IWSPLLIAATLSGSMWLRGKSNTEIKQKIDVDFLPTCVTGLGFWPPVNIVQYAFVPLKWRASAGACAGGIWSTYLSYQS 176          
BLAST of mRNA_A-nodosum_M_contig1167.23.1 vs. uniprot
Match: UPI0009019DAB (protein SYM1-like n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI0009019DAB)

HSP 1 Score: 75.9 bits (185), Expect = 1.670e-12
Identity = 40/137 (29.20%), Postives = 70/137 (51.09%), Query Frame = 0
Query:   51 MKGNIEFKWDAPRTMRMGISGAFILAPMSLTWNLCAERVAPGRSLRAVLIKMGISMGVIPPMIGIQFTSLTLMEGGKSMEDVQHKLFRDLTPTIKNAYCYWPVVSVMNTLFVSVINRPAMSSFAGVFWNIYMSYQAN 187
            + G+   ++D  RT+RM   G  IL P    W        P R LR+ L KM +   V  P++   F S+     G++  ++  +L RD+ PT+K+ + +WP+   +   F+ V  +P +S+     WN+Y++Y A+
Sbjct:  120 LSGSSLEQYDLVRTLRMAGYGMVILGPSLHYWFNFISMAFPKRDLRSTLTKMAMGQTVFGPIMTAVFFSVNSALQGENGAEILARLKRDVIPTMKSGFMFWPMCDFITFRFIPVHLQPLVSNSFSYIWNVYLTYTAS 256          
BLAST of mRNA_A-nodosum_M_contig1167.23.1 vs. uniprot
Match: A0A4S8IY19_MUSBA (Uncharacterized protein n=2 Tax=Musa TaxID=4640 RepID=A0A4S8IY19_MUSBA)

HSP 1 Score: 73.2 bits (178), Expect = 1.630e-11
Identity = 38/128 (29.69%), Postives = 63/128 (49.22%), Query Frame = 0
Query:   60 DAPRTMRMGISGAFILAPMSLTWNLCAERVAPGRSLRAVLIKMGISMGVIPPMIGIQFTSLTLMEGGKSMEDVQHKLFRDLTPTIKNAYCYWPVVSVMNTLFVSVINRPAMSSFAGVFWNIYMSYQAN 187
            D  RT+RM   G  IL P    W     R+ P + +   L KM +      P++   F S+  +  G++  ++  +L RD+ PT+K  + YWPV   +   FV V+ +P + +     W IY++Y A+
Sbjct:  132 DLVRTLRMAGYGMIILGPSLHFWFNFVARILPKQDMITTLKKMFLGQTTYGPLMTAAFFSVNAVLQGETRGEIIARLKRDMFPTVKRGFMYWPVCDFITFRFVPVLLQPLVCNSFSFLWTIYLTYMAS 259          
BLAST of mRNA_A-nodosum_M_contig1167.23.1 vs. uniprot
Match: A0A1D2NCD3_ORCCI (Protein Mpv17 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2NCD3_ORCCI)

HSP 1 Score: 71.2 bits (173), Expect = 2.260e-11
Identity = 42/154 (27.27%), Postives = 73/154 (47.40%), Query Frame = 0
Query:   40 IGDLGCQTLESMKGNIEFKWDAPRTMRMGISGAFILAPMSLTW-NLCAERVAPGRS-LRAVLIKMGISMGVIPPMIGIQFTSLTLMEGGKSMEDVQHKLFRDLTPTIKNAYCYWPVVSVMNTLFVSVINRPAMSSFAGVFWNIYMSYQANHNGL 191
            +GD   QTL   K     K+D  R +R G+ G  I+ P   TW  +   R++   S L   + KMG+  G+  P+    F  +  +  G S+  +++ + ++ T  + + Y  WP V +++   V +  R        VFWN Y+S++ N  G+
Sbjct:   29 LGDGISQTLVEKKD----KFDLNRNIRFGMLGLCIIGPTLRTWYGILDRRISIKASKLGTAVAKMGVDQGIFAPIFLANFLGINSLMQGNSLNQMKNDITKNFTDVVISNYKLWPAVQLISFSVVPLQYRVLFVQTVAVFWNTYLSWKTNSEGI 178          
BLAST of mRNA_A-nodosum_M_contig1167.23.1 vs. uniprot
Match: A0A316U4Y7_9BASI (Protein SYM1 n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316U4Y7_9BASI)

HSP 1 Score: 66.2 bits (160), Expect = 2.220e-9
Identity = 45/135 (33.33%), Postives = 67/135 (49.63%), Query Frame = 0
Query:   59 WDAPRTMRMGISGAFILAPMSLTWNLCAERV--APGRSLRAVLIKMGISMGVIPP-MIGIQFTSLTLMEGGKSMEDVQHKLFRDLTPTIKNAYCYWPVVSVMNTLFVSVINRPAMSSFAGVFWNIYMSYQANHNG 190
            +D  RT+R+G+ G  I AP+   W    E+V   PG S   V  K+ +  G+  P M+ + FT+ TLM GG S  DV+ KL      T+K ++  W  V  +N  FV V  R    +   + WN +++  A   G
Sbjct:   45 YDYVRTLRLGLYGGAIFAPIMSVWFRTLEKVPGVPG-SFANVAGKVALDQGLAAPNMLAVFFTATTLMAGG-STADVKKKLDTSYWSTLKTSWAVWIPVQGLNMAFVPVGQRLLFVNVVSLAWNTFLAAVAAGGG 177          
BLAST of mRNA_A-nodosum_M_contig1167.23.1 vs. uniprot
Match: UPI001C4D0143 (uncharacterized protein LOC122023235 n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4D0143)

HSP 1 Score: 67.4 bits (163), Expect = 3.300e-9
Identity = 35/128 (27.34%), Postives = 63/128 (49.22%), Query Frame = 0
Query:   60 DAPRTMRMGISGAFILAPMSLTWNLCAERVAPGRSLRAVLIKMGISMGVIPPMIGIQFTSLTLMEGGKSMEDVQHKLFRDLTPTIKNAYCYWPVVSVMNTLFVSVINRPAMSSFAGVFWNIYMSYQAN 187
            D  R +RM   G  +L P    W     ++ P + +  +L K+ +      P++   F S+     G+S +++  +L RDL PTIK  + YWP+   +   F  V  +P + +    FW IY++++A+
Sbjct:  214 DIVRILRMSGYGLLVLGPSLHFWYNFLSKILPKQDIITILKKILLGQTTFGPVMTAVFFSVNAFLQGESGDEIFSRLNRDLIPTIKAGFLYWPLCDFITFKFAPVQLQPLVCNSFSFFWTIYLTHKAS 341          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1167.23.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JW72_9PHAE3.310e-6559.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G038_ECTSI3.440e-6259.12Integral membrane protein-like protein n=1 Tax=Ect... [more]
A0A835ZBN1_9STRA1.410e-3946.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A813WUK2_9BILA4.530e-1733.96Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A0L0G1N2_9EUKA4.660e-1330.57Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
UPI0009019DAB1.670e-1229.20protein SYM1-like n=1 Tax=Ipomoea nil TaxID=35883 ... [more]
A0A4S8IY19_MUSBA1.630e-1129.69Uncharacterized protein n=2 Tax=Musa TaxID=4640 Re... [more]
A0A1D2NCD3_ORCCI2.260e-1127.27Protein Mpv17 n=1 Tax=Orchesella cincta TaxID=4870... [more]
A0A316U4Y7_9BASI2.220e-933.33Protein SYM1 n=1 Tax=Pseudomicrostroma glucosiphil... [more]
UPI001C4D01433.300e-927.34uncharacterized protein LOC122023235 n=2 Tax=Zingi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007248Mpv17/PMP22PFAMPF04117Mpv17_PMP22coord: 122..183
e-value: 6.4E-15
score: 55.1
IPR007248Mpv17/PMP22PANTHERPTHR11266PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17coord: 40..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..260
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..261

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1167contigA-nodosum_M_contig1167:207874..216310 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1167.23.1mRNA_A-nodosum_M_contig1167.23.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1167 205883..216402 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1167.23.1 ID=prot_A-nodosum_M_contig1167.23.1|Name=mRNA_A-nodosum_M_contig1167.23.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=273bp
MIDCSRSSFSLLLSPFFEKVTRVSSQPHQPFFCFWETSNIGDLGCQTLES
MKGNIEFKWDAPRTMRMGISGAFILAPMSLTWNLCAERVAPGRSLRAVLI
KMGISMGVIPPMIGIQFTSLTLMEGGKSMEDVQHKLFRDLTPTIKNAYCY
WPVVSVMNTLFVSVINRPAMSSFAGVFWNIYMSYQANHNGLDLGEVSEVL
PLVEAEPVPVTAGQSPLRKEMAVARKEVREGESNAKMSAEQEADAGKDGK
PMEAQSRKTKRALVRKTTVVSM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22