prot_A-nodosum_M_contig116.64.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig116.64.2
Unique Nameprot_A-nodosum_M_contig116.64.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length278
Homology
BLAST of mRNA_A-nodosum_M_contig116.64.2 vs. uniprot
Match: A0A6H5L4C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C0_9PHAE)

HSP 1 Score: 370 bits (950), Expect = 5.080e-125
Identity = 197/281 (70.11%), Postives = 224/281 (79.72%), Query Frame = 0
Query:    1 MGDRDAPISCLFVSDLPTDITEKDLEKLFAGCHGFDSCRLRKDKNEKDVGFVEFRDSESAEIAKDRFKGHILKGHSIAVCYARAGRKRSRQERTEPRDNDGYTGVSSSGHHR----------TPSGGI----QTSLAGGVGAGYLGMGMSGMGGIHAAQAYGMATPRLMQ----MSAMGLPLRLPGDAHHTLYVEGIPGDATERELAHIFRPFPGYISLRLRAKGGRGNAGNSSSSGDAICFVEFESPYHATIAKMGVVDYRLDKLDRNSLVLRIEYAKAK 263
            MGDRD P   LFVSDLP+DITEK+LE+LFAGCHGF+SCR+RKDKNE DVGFV+F D+ESA IAK+RFKGH+ +GH IAVCYAR  RKR R ER++ RD DG  G  S  +            TPSGG+     T+L+  V  GYLGMG+ G+GGIHAAQAYGMATPRLMQ    MSAMGLPL LP DAHHTLYVEGIPGD +ERELAHIFRPFPGYISLRLRAKGGR + G++S++ +AICFVEFES YHATIAKMG  DYRLDK+DRNS VLRIEYAK+K
Sbjct:    1 MGDRDIPSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPIAVCYARPARKRHRPERSDARDMDG--GGDSRNYQSMQXXXXXXXXTPSGGVGGGLPTNLSS-VNTGYLGMGIGGIGGIHAAQAYGMATPRLMQASTAMSAMGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGR-SLGSASANVEAICFVEFESSYHATIAKMGAADYRLDKIDRNSAVLRIEYAKSK 277          
BLAST of mRNA_A-nodosum_M_contig116.64.2 vs. uniprot
Match: D7FXN5_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN5_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 4.670e-34
Identity = 58/79 (73.42%), Postives = 68/79 (86.08%), Query Frame = 0
Query:    1 MGDRDAPISCLFVSDLPTDITEKDLEKLFAGCHGFDSCRLRKDKNEKDVGFVEFRDSESAEIAKDRFKGHILKGHSIAV 79
            MGDRD P   LFVSDLP+DITEK+LE+LFAGCHGF+SCR+RKDKNE DVGFV+F D+ESA IAK+RFKGH+ +GH I  
Sbjct:    1 MGDRDTPSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPIGA 79          
BLAST of mRNA_A-nodosum_M_contig116.64.2 vs. uniprot
Match: A0A835Z002_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z002_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.050e-28
Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = 0
Query:  160 MGLPLRLPGDAHHTLYVEGIPGDATERELAHIFRPFPGYISLRLRAKGGRGNAGNSSSSGD----AICFVEFESPYHATIAKMGVVDYRLDKLDRNSLVLRIEYAKAKGG 265
            MGLPL+LP DA  TLYVEGIP DA+ERE+AHIFRPFPGY SLR+R K         S+ GD    A+CFVEF++ Y A++AK+   DY++D+ D  +  L + YA+ + G
Sbjct:    1 MGLPLQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHK--------ESARGDGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYARGRRG 102          
BLAST of mRNA_A-nodosum_M_contig116.64.2 vs. uniprot
Match: L8H910_ACACA (RNA recognition motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H910_ACACA)

HSP 1 Score: 118 bits (296), Expect = 1.220e-27
Identity = 91/286 (31.82%), Postives = 137/286 (47.90%), Query Frame = 0
Query:    9 SCLFVSDLPTDITEKDLEKLFAGCHGFDSCRLRKDKNEKDVGFVEFRDSESAEIAKDRFKGHILK---GHSIAVCYARAGRKRSRQERTEPRD--NDGYTGVSSS--------------GHHRTPSGGIQTSLAGGVGAGYLGMG----------MSGMGGIHAAQAYGMATPRLMQMSAM---GLPLRLPGDAHHTLYVEGIPGDATERELAHIFRPFPGYISLRLRAKGGRGNAGNSSSSGDAICFVEFESPYHATIAKMGVVDYRLDKLDRNSLVLRIEYAKA 262
            + LF++++P ++TE +    F+   G+ S RLR+D+NE  VGFVEF D +SA  A+++F          H I + +A    +   +ER + +   +  Y   SSS              G  R      + SL  G+    +G+           MSGM      Q Y    P     S +       +L  DA  TLYVEG+P DATERE+AHIFR  PGY+ +R++ K  + +     +    +C+VEFE+ Y+A +A   +  Y++DK D   L   I YAK 
Sbjct:   46 TALFIAEIPLEVTEAEFRSTFSSEPGYISARLRRDRNENTVGFVEFSDHKSAAEAREQFNNFKFSHNDDHGITIHFAHEHSRNKHRERDDGKHYGSQHYDQPSSSRKGYNXXXXXXDGYGSMRAADVNSRVSLTSGLPLVPMGVSPMMPGPTSLDMSGM------QFYSTVAPNAQFASYVQPQAYSPQLSPDAAPTLYVEGLPLDATEREVAHIFRQMPGYLGIRIKPKESKQHPSRVFN----LCWVEFETKYNAAVALHHLKGYKMDKNDTKGLT--ISYAKT 319          
BLAST of mRNA_A-nodosum_M_contig116.64.2 vs. uniprot
Match: A0A6J0KMJ8_RAPSA (nuclear speckle RNA-binding protein A-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0KMJ8_RAPSA)

HSP 1 Score: 100 bits (248), Expect = 1.710e-22
Identity = 53/113 (46.90%), Postives = 73/113 (64.60%), Query Frame = 0
Query:  164 LRLPGDAHHTLYVEGIPGDATERELAHIFRPFPGYISLRLRAKGGRGNAGNSSSSGDAI--CFVEFESPYHATIAKMGVVDYRLDKLDRNSLVLRIEYAKAKGGRDRDRGGDR 274
            LRLP DA  TL+VEG+P D + RE+AHIFRPFPGY  +RL  K  +        +GD I  CFV+FE+P  A  A+  +  YR+D+ +R+S +LRI++++  G R   RGG R
Sbjct:   45 LRLPPDASSTLFVEGLPSDCSMREVAHIFRPFPGYKEVRLVTKDSK------HRNGDLIILCFVDFENPACAATARNALQGYRMDEEERDSKILRIQFSRNPGPRPGQRGGRR 151          
BLAST of mRNA_A-nodosum_M_contig116.64.2 vs. uniprot
Match: A0A7S0HWY9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HWY9_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 4.440e-22
Identity = 97/314 (30.89%), Postives = 134/314 (42.68%), Query Frame = 0
Query:    4 RDAPISCLFVSDLPTDITEKDLEKLFAGCHGFDSCRLRKDKNEKDVGFVEFRDSESAEIAKDRFKGHI-LKGHSIAVCYARAGR---KRSRQERTEP-------------RDNDGYTGVSSSGHHRTPSGGIQTSLAGGVGAGYLGMGMSGMGGIHAAQAYGMAT--------------------------------PRLMQMSAMGLPLRLPGDAHHTLYVEGIPGDATERELAHIFRPFPG--YISLRLRAKGGRGNAGNSSSSGDAICFVEFESPYHATIAKMGVVDYRLDKLDRNSLVLRIEYAKAKGGR 266
            R  P +CLF+ +LP D+T+  LE+ F G  GF   R RKD+N K VGFVEF   + A   +D  +G    +G S  + Y+   +   KR R+E  +P             R N+        G    P   +  S  GG G                   +G                                   P    +    L  +LP DA  TLYVEG+P DATERE+AHIFR F G  Y S+R+ A+      G +      +CFVEF++P+ AT     +  YR+DK    + V +I +AK+KG R
Sbjct:    3 RAPPSNCLFLPELPADLTDATLERHFRGFVGFQVARTRKDRNSKLVGFVEFDAVDDAVRCRDSMQGTSPFEGISWHIHYSNNTKGTPKRPREEMEQPVSRMDAQRPAMYDRPNNQXXXXXXXG---AP---MMQSPGGGYGXXXXXXXXXXXXXXXXXXHHGXXXXXXXXXXXXXXXXXXGPMYQPMXXXXXXXXXXPAGSSIPPNYLSAQLPRDASSTLYVEGLPSDATEREVAHIFRRFEGHGYQSIRMLARESSKTPGKNLY----LCFVEFDNPHQATACLHQMQGYRVDKAIEGAGV-KISFAKSKGDR 305          
BLAST of mRNA_A-nodosum_M_contig116.64.2 vs. uniprot
Match: A0A1J6IWH5_NICAT (Rna-binding protein 2 n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1J6IWH5_NICAT)

HSP 1 Score: 98.2 bits (243), Expect = 6.520e-21
Identity = 51/111 (45.95%), Postives = 70/111 (63.06%), Query Frame = 0
Query:  164 LRLPGDAHHTLYVEGIPGDATERELAHIFRPFPGYISLRLRAKGGRGNAGNSSSSGDAICFVEFESPYHATIAKMGVVDYRLDKLDRNSLVLRIEYAKAKGGRDRDRGGDR 274
            + LP DA  TL+VEG+P D T RE++HIFRPF GY  +RL  KG R + G+       +CFV+F +P HA  A   +  YR D+ DR+S+ LR++YA+  G R    GG+R
Sbjct:  125 ISLPPDASSTLFVEGLPADCTRREVSHIFRPFVGYKEVRLVPKGSRHHGGDPL----ILCFVDFVTPLHAAAAMDALQGYRFDEHDRDSVSLRLQYARNPGARSG--GGNR 229          
BLAST of mRNA_A-nodosum_M_contig116.64.2 vs. uniprot
Match: A0A6L2J5P6_TANCI (RNA-binding protein 1-like n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2J5P6_TANCI)

HSP 1 Score: 96.7 bits (239), Expect = 3.550e-20
Identity = 61/139 (43.88%), Postives = 84/139 (60.43%), Query Frame = 0
Query:  131 LGMGMSGMGGIHAAQAYGMATPRLMQMSAMGLP-LRLPGDAHHTLYVEGIPGDATERELAHIFRPFPGYISLRLRAKGGRGNAGNSSSSGD--AICFVEFESPYHATIAKMGVVDYRLDKLDRNSLVLRIEYAKAKGGR 266
            +GMG++GM    AA A   A    +   A G P + LP DA +TL+VEG+P + + RE+AHIFRPF GY  +RL  K  R       SSGD   +CFV+FESP  A  AK  +  Y+ D+ DR+S +LR+++A+  G R
Sbjct:  106 MGMGLAGMDLAVAAAAAAKARDTGL---AGGRPEIALPPDASNTLFVEGLPSNCSRREVAHIFRPFVGYKEVRLVTKESR------HSSGDPLVLCFVDFESPAEAATAKDALHGYKFDEHDRDSGILRMQFARNPGVR 235          
BLAST of mRNA_A-nodosum_M_contig116.64.2 vs. uniprot
Match: A0A5A7P711_STRAF (RNA-binding protein with multiple splicing n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7P711_STRAF)

HSP 1 Score: 96.3 bits (238), Expect = 3.650e-20
Identity = 49/111 (44.14%), Postives = 72/111 (64.86%), Query Frame = 0
Query:  164 LRLPGDAHHTLYVEGIPGDATERELAHIFRPFPGYISLRLRAKGGRGNAGNSSSSGDAICFVEFESPYHATIAKMGVVDYRLDKLDRNSLVLRIEYAKAKGGRDRDRGGDR 274
            ++LP DA  TLYVEG+PG+ + RE++HIFRPF GY  +RL  K  R + G++      +CFV+F SP HA  A   +  Y+ D+ DR+S +LR+++A+  G R    GG+R
Sbjct:  128 IQLPPDATSTLYVEGLPGNCSRREVSHIFRPFVGYKEVRLVTKESRHSGGDTL----VLCFVDFLSPAHAATAMDALQGYKFDEHDRDSAILRLQFARYPGARSG--GGNR 232          
BLAST of mRNA_A-nodosum_M_contig116.64.2 vs. uniprot
Match: UPI001CB91082 (RNA-binding protein 1-like isoform X1 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB91082)

HSP 1 Score: 96.3 bits (238), Expect = 4.750e-20
Identity = 62/151 (41.06%), Postives = 85/151 (56.29%), Query Frame = 0
Query:  131 LGMGMSGMGGIHAAQAYGMATPRLMQMSAMGLP-LRLPGDAHHTLYVEGIPGDATERELAHIFRPFPGYISLRLRAKGGRGNAGNSSSSGDAICFVEFESPYHATIAKMGVVDYRLDKLDRNSLVLRIEYAKAKGGRD----RDRGGDRDR 276
            +GMG+     I AA + G     L      G P + LP DA +TL+VEG+P + + RE+AHIFRPF GY  +RL  K  R    +SS     +CFV+FESP  A  AK  +  Y+ D+ DR+S+ LR+++A+  G R     R  GG R R
Sbjct:  106 IGMGLGSADHIAAATSKGRDAGLLG-----GRPDVALPADASNTLFVEGLPSNCSRREVAHIFRPFVGYKEVRLVTKESR----HSSKDPLVLCFVDFESPAEAATAKDALQGYKFDEHDRDSVSLRMQFARYPGARTGGGARSSGGSRGR 247          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig116.64.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4C0_9PHAE5.080e-12570.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXN5_ECTSI4.670e-3473.42RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z002_9STRA2.050e-2852.73RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
L8H910_ACACA1.220e-2731.82RNA recognition motif domain containing protein n=... [more]
A0A6J0KMJ8_RAPSA1.710e-2246.90nuclear speckle RNA-binding protein A-like n=1 Tax... [more]
A0A7S0HWY9_9EUKA4.440e-2230.89Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A1J6IWH5_NICAT6.520e-2145.95Rna-binding protein 2 n=5 Tax=Nicotiana TaxID=4085... [more]
A0A6L2J5P6_TANCI3.550e-2043.88RNA-binding protein 1-like n=1 Tax=Tanacetum ciner... [more]
A0A5A7P711_STRAF3.650e-2044.14RNA-binding protein with multiple splicing n=1 Tax... [more]
UPI001CB910824.750e-2041.06RNA-binding protein 1-like isoform X1 n=1 Tax=Erig... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 10..80
e-value: 2.8E-15
score: 66.8
coord: 173..258
e-value: 0.013
score: 23.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 11..77
e-value: 3.3E-15
score: 55.7
coord: 174..237
e-value: 8.2E-6
score: 25.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 9..84
score: 13.924767
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 172..262
score: 10.803629
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 167..270
e-value: 3.3E-15
score: 58.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..119
e-value: 7.1E-21
score: 76.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..115
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 150..265
coord: 8..84
NoneNo IPR availableCDDcd00590RRM_SFcoord: 11..80
e-value: 6.33911E-17
score: 71.5673
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 8..237

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig116contigA-nodosum_M_contig116:841803..854561 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig116.64.2mRNA_A-nodosum_M_contig116.64.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig116 841368..854687 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig116.64.2 ID=prot_A-nodosum_M_contig116.64.2|Name=mRNA_A-nodosum_M_contig116.64.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=278bp
MGDRDAPISCLFVSDLPTDITEKDLEKLFAGCHGFDSCRLRKDKNEKDVG
FVEFRDSESAEIAKDRFKGHILKGHSIAVCYARAGRKRSRQERTEPRDND
GYTGVSSSGHHRTPSGGIQTSLAGGVGAGYLGMGMSGMGGIHAAQAYGMA
TPRLMQMSAMGLPLRLPGDAHHTLYVEGIPGDATERELAHIFRPFPGYIS
LRLRAKGGRGNAGNSSSSGDAICFVEFESPYHATIAKMGVVDYRLDKLDR
NSLVLRIEYAKAKGGRDRDRGGDRDRY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf