prot_A-nodosum_M_contig1148.9.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1148.9.1
Unique Nameprot_A-nodosum_M_contig1148.9.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length300
Homology
BLAST of mRNA_A-nodosum_M_contig1148.9.1 vs. uniprot
Match: A0A6H5KW83_9PHAE (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW83_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.810e-41
Identity = 108/201 (53.73%), Postives = 117/201 (58.21%), Query Frame = 0
Query:    1 MARYRPGHDLPGPDGGRAKKHREFIRIKYVDKRWYATPDDLEKDAQREKEREVARVRRDADRGKRDSASGGRGAVPKKPERPSGVSAERARRGSLDRGLGKVDPLKAGGVAAAVKPPPAPKKQVDLLDFLSD-------GPVQ----AQVPRPAQQWAAFSGGESAIGAIARPPAP--PATGGAPGFASWTAFGDAPAASQ 188
            MARYRPGHDLP P+GGRA KHREFIR KYVDKRWY TP+DL +D QRE ERE +R +RDA+RG     S           +P   SA R R+G  DRGL KV+P  A      VK PP P KQVDLLDFLSD        PVQ       P   Q W AF       GA A  PA   PA G A GFASW AFGD PA  Q
Sbjct:   95 MARYRPGHDLPEPEGGRAAKHREFIRTKYVDKRWYGTPEDLAQDRQREAEREESRAKRDAERG-----SSXXXXXXXXXXQPRSASAARPRKGGGDRGLRKVEPA-AXXXXXXVKVPPVPAKQVDLLDFLSDDPAPPPAAPVQPAGAVAAPAQTQPWDAF-------GAPAPTPAAAAPAVGTAAGFASWAAFGDDPAVPQ 282          
BLAST of mRNA_A-nodosum_M_contig1148.9.1 vs. uniprot
Match: D8LD15_ECTSI (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD15_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 8.340e-18
Identity = 60/123 (48.78%), Postives = 64/123 (52.03%), Query Frame = 0
Query:    1 MARYRPGHDLPGPDGGRAKKHREFIRIKYVDKRWYATPDDLEKDAQREKEREVARVRRDADRGKRDSASGGRGAVPKKPERPSGVSAERARRGSLDRGLGKVDPLKAGGVAAAVKPPPAPKKQ 123
            MARYRPGHDLP P+GGRA KHREFIR KYVDKRWY TP+DL  D QRE     A                                  R R+ S DRGL KV+P      AAAVK PP P KQ
Sbjct:   95 MARYRPGHDLPEPEGGRAAKHREFIRTKYVDKRWYGTPEDLANDRQRE-----AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPRKASGDRGLRKVEPA-----AAAVKAPPVPAKQ 207          
BLAST of mRNA_A-nodosum_M_contig1148.9.1 vs. uniprot
Match: A0A836C8Y8_9STRA (Putative GTPase activating protein for Arf-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Y8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.740e-9
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 0
Query:    1 MARYRPGHDLPGPDGGRAKKHREFIRIKYVDKRWYATPDDLEKDAQREKEREVARVR 57
            +A+Y P  DLP PDG   +K REFIR+KY +KRWYAT +DL ++A+ +  R  AR R
Sbjct:   86 LAKYDPDRDLPEPDGSSVEKRREFIRMKYQEKRWYATTEDLAREAEEQARRASARAR 142          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1148.9.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KW83_9PHAE2.810e-4153.73Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
D8LD15_ECTSI8.340e-1848.78Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836C8Y8_9STRA1.740e-952.63Putative GTPase activating protein for Arf-domain-... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..299
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 274..299
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..260

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1148contigA-nodosum_M_contig1148:111985..113489 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1148.9.1mRNA_A-nodosum_M_contig1148.9.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1148 111816..116150 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1148.9.1 ID=prot_A-nodosum_M_contig1148.9.1|Name=mRNA_A-nodosum_M_contig1148.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=300bp
MARYRPGHDLPGPDGGRAKKHREFIRIKYVDKRWYATPDDLEKDAQREKE
REVARVRRDADRGKRDSASGGRGAVPKKPERPSGVSAERARRGSLDRGLG
KVDPLKAGGVAAAVKPPPAPKKQVDLLDFLSDGPVQAQVPRPAQQWAAFS
GGESAIGAIARPPAPPATGGAPGFASWTAFGDAPAASQQQQQPQQQKAPQ
QVPSFAFQDGSTTQAQPASGSTFPAFSFSTNLPATANANVGQQQKQQQQP
WSQQQVSTVPAPAVLPKAGFPQAGSHGQQPQPPQNRAAFGAQATPSGGL*
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