prot_A-nodosum_M_contig114.6.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig114.6.2
Unique Nameprot_A-nodosum_M_contig114.6.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length769
Homology
BLAST of mRNA_A-nodosum_M_contig114.6.2 vs. uniprot
Match: D8LHQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ6_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 7.400e-21
Identity = 138/404 (34.16%), Postives = 172/404 (42.57%), Query Frame = 0
Query:   34 NSANARERGWAEAAIPGVEEQMEEWQRKRSRLEAGLPEAPDDRQPGS---------------NQPGGASSRCEKGVFDVGGRVETVLASAPAVAK-----------KRPDDFDATFRGLMPGMIKIMPSGDRSGPGSHAEDC-------GSGGLTEDTFQKVFVEVSEDEVERWQAPWMAGLMNR-------ARGDGG---------GKEL--------SVDGG-------------ISGRGVSKSQQI--PEPALADDTKKGE-----LSDLHHEILRFSEYVSLTPAEVEARENMKRSVKTAAVNAFGPGASVGFFGSY--PRDERFGTNVTAPGENFSIFLSDVDIFVKPDGGGDGPGGVANAGGSPPGEPSGTVIDLTLGEGFVNA-----DAFEEGSNA 353
            N++ AR     EA    VE ++ +W+RKR+R EAGLP    +RQ GS                  GGA  R        GGR E   +  P  A+           + P+ F+A      P   + MP   R+GP S A          GS G+T D   +       D   RW APWM GL++R        RG GG         G E         + DGG             I G G S    +  PE A  D   +       LSDLHHEILRF +YVSLTPAEV AREN+  SV+ +A  A G GA+   +GSY    DE            FSIFLSDVDI V+P      P   + A   PP   S      TLG GF++      D FEEGS++
Sbjct:  128 NASGARRTERREAVHHDVEVKLGQWRRKRAREEAGLP-GDGERQYGSCPAGAGYYERSDGGGGMQGGAFGRSSLSAGG-GGRGEAGDSRVPGGARGCWRGAANGGGRWPEVFNA------PAPRRSMPRPGRAGPFSSAATATARPGGSGSTGVTSDARAR-------DAGTRWVAPWMVGLVDRFPGGAAGPRGRGGRDAGRVGLVGSEEGEAGLLRGASDGGALHSRGPDGSDMDICGAGSSHGSSVKGPEGAAGDGGAEXXXXXXGLSDLHHEILRFEDYVSLTPAEVAARENLVSSVQASAREALGSGATARAYGSYGGAGDELC----------FSIFLSDVDISVRP------PADPSIA--PPPQGRSKPPARSTLG-GFLDLTRGSDDGFEEGSSS 497          
BLAST of mRNA_A-nodosum_M_contig114.6.2 vs. uniprot
Match: A0A6H5JXD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD9_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.040e-18
Identity = 131/400 (32.75%), Postives = 167/400 (41.75%), Query Frame = 0
Query:   34 NSANARERGWAEAAIPGVEEQMEEWQRKRSRLEAGLPEAPDDR--------------QPGSNQPGGASSRC----------EKGVFDVGGRVETVLASAPAVAKKRPDDFDATFRGLMPGMIKIMPSGDRSGP-----GSHAEDCGSG--GLTEDTFQKVFVEVSEDEVERWQAPWMAGLMNR-------ARGDGG---------GKEL--------SVDGG-------------ISGRGVSKSQQI--PEPALADDTKKGE-----LSDLHHEILRFSEYVSLTPAEVEARENMKRSVKTAAVNAFGPGASVGFFGSY--PRDERFGTNVTAPGENFSIFLSDVDIFVKPDGGGDG---PGGVANAGGSPPGEPSGTVIDLTLGEGFVNADAFEEGSNA 353
            N++ AR     EA    VE ++ +W++KR+R EAGLP   + +                G +  GG   R           E G   V G        A     + P+ F+A      P   + MP   R+GP      + A   GSG  G+T D   +       D   RW APWM GL++R        RG GG         G E         + DGG             I G G S    +  PE A  D   +G       SDLHHEILRF +YVSLTPAEV AREN+  SV+ +A  A G GA+   +GSY    DE            FSIFLSDVDI V+P         P G   A   P     G+ +DLT G    + D FEEGS++
Sbjct:  180 NASGARRAERREAVHHDVEVKLGQWRKKRAREEAGLPGDGEQQYGPCPAGAGYYEQSDGGGSMQGGTFGRSLXXXXXXXXXEAGDSRVLGGAGGCWRGAANGGGRWPEVFNA------PAPRRSMPRPGRAGPFPSAAAATARPGGSGSTGVTSDARAR-------DAETRWVAPWMVGLVDRFPGGAAGPRGRGGRDAGRVGLVGSEEGEAGLLRGASDGGALQSRGRDGSNVDIHGAGSSHGSSVKSPEGATRDGGAEGGGEASGQSDLHHEILRFEDYVSLTPAEVAARENLVSSVQASAREALGSGATARAYGSYGGAGDELC----------FSIFLSDVDISVRPPADSSTVPPPQGRCKA---PARSTLGSFLDLTRG----SDDGFEEGSSS 549          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig114.6.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHQ6_ECTSI7.400e-2134.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXD9_9PHAE1.040e-1832.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.1410.10coord: 487..639
e-value: 9.2E-10
score: 40.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 701..769
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 346..372
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 349..363
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..330
NoneNo IPR availablePANTHERPTHR23092:SF15INACTIVE NON-CANONICAL POLY(A) RNA POLYMERASE PROTEIN TRF4-2-RELATEDcoord: 176..573
NoneNo IPR availableSUPERFAMILY81631PAP/OAS1 substrate-binding domaincoord: 501..574
IPR045862Nucleotidyltransferase Trf4-likePANTHERPTHR23092POLY(A) RNA POLYMERASEcoord: 176..573

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig114contigA-nodosum_M_contig114:119608..144703 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig114.6.2mRNA_A-nodosum_M_contig114.6.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig114 119165..144703 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig114.6.2 ID=prot_A-nodosum_M_contig114.6.2|Name=mRNA_A-nodosum_M_contig114.6.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=769bp
MTKQVPKHVANPPRRAKKRKKTAAPANAASNACNSANARERGWAEAAIPG
VEEQMEEWQRKRSRLEAGLPEAPDDRQPGSNQPGGASSRCEKGVFDVGGR
VETVLASAPAVAKKRPDDFDATFRGLMPGMIKIMPSGDRSGPGSHAEDCG
SGGLTEDTFQKVFVEVSEDEVERWQAPWMAGLMNRARGDGGGKELSVDGG
ISGRGVSKSQQIPEPALADDTKKGELSDLHHEILRFSEYVSLTPAEVEAR
ENMKRSVKTAAVNAFGPGASVGFFGSYPRDERFGTNVTAPGENFSIFLSD
VDIFVKPDGGGDGPGGVANAGGSPPGEPSGTVIDLTLGEGFVNADAFEEG
SNASEQATPCDEEGKSVSASPGLVEEGAGRLAIQKLGTKSGAAKATPSSV
VTTAGGIKTLGMFFKRRSKEARSRLKHFGKELQKNAWIMGYEFHKCASEV
CVAPNIQVPGISCRDARSGVESDIVWGGHRRSEALAAQIGPAYFSAMFPG
AFLPLVKFLKVLMYQRNLDNPCTGRIGSFRLYVLVAAYLEACGATSSTVA
TGSLSSASADLGKLLMGFLRRYASDSQDALTSKSKLQVKTVKVKLKSAYR
ADSASQTFKEALCLLSKPTPANSGSSSSSGEEDAVMVQVRAGDLELQRSR
GRRGSILGRVIWGSDLRKEREARLAAVGSAKASPAPQEPDPAWHRELEAL
SIPGPRDNRVISIKGGGPKRKNANNGGGGVKGGPAGSRVQPRGKKMTKKE
RKAAMSPAAQRKATAQRES
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR045862Trf4-like