prot_A-nodosum_M_contig1097.10.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig1097.10.1
Unique Name	prot_A-nodosum_M_contig1097.10.1
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	117

Homology

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BLAST of mRNA_A-nodosum_M_contig1097.10.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 2.450e-68
Identity = 110/116 (94.83%), Postives = 112/116 (96.55%), Query Frame = 0

Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDAFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKSVTKFTSS 116
            MAKTPSKKSAK PKKAGDKK+ NKR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFIND FERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTK+VTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116

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BLAST of mRNA_A-nodosum_M_contig1097.10.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.010e-61
Identity = 100/116 (86.21%), Postives = 109/116 (93.97%), Query Frame = 0

Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDAFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKSVTKFTSS 116
            MAKTPSKKSAK PKKAGDK K  KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTK+VTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130

[Close]

BLAST of mRNA_A-nodosum_M_contig1097.10.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 190 bits (482), Expect = 1.560e-60
Identity = 101/117 (86.32%), Postives = 107/117 (91.45%), Query Frame = 0

Query:    1 MAKTPSKKSAKVPKKAGD-KKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDAFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKSVTKFTSS 116
            MAK PSKK+AK PKKA D KKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFIND FER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTK+VTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117

[Close]

BLAST of mRNA_A-nodosum_M_contig1097.10.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 189 bits (479), Expect = 4.630e-60
Identity = 100/118 (84.75%), Postives = 109/118 (92.37%), Query Frame = 0

Query:    1 MAKTPSKKSAKVPKKAGDKKKANK--RIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDAFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKSVTKFTSS 116
            MAKTPSKKSAK PKK G+K K  K  RIESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTK+VTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118

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BLAST of mRNA_A-nodosum_M_contig1097.10.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 188 bits (477), Expect = 7.960e-60
Identity = 97/115 (84.35%), Postives = 108/115 (93.91%), Query Frame = 0

Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDAFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKSVTKFTS 115
            MAKTPSKK+AK PKKAG K+  NKR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTK+VTKFTS
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 113

[Close]

BLAST of mRNA_A-nodosum_M_contig1097.10.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 190 bits (482), Expect = 1.040e-58
Identity = 101/117 (86.32%), Postives = 107/117 (91.45%), Query Frame = 0

Query:    1 MAKTPSKKSAKVPKKAGD-KKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDAFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKSVTKFTSS 116
            MAK PSKK+AK PKKA D KKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFIND FER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTK+VTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250

[Close]

BLAST of mRNA_A-nodosum_M_contig1097.10.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 184 bits (466), Expect = 4.040e-58
Identity = 96/116 (82.76%), Postives = 105/116 (90.52%), Query Frame = 0

Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDAFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKSVTKFTSS 116
            MAKTPSK+SAK PKKA    K+ KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTK+VTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116

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BLAST of mRNA_A-nodosum_M_contig1097.10.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.580e-56
Identity = 96/115 (83.48%), Postives = 106/115 (92.17%), Query Frame = 0

Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDAFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKSVTKFTS 115
            MAKTPSKK+A  PKKAG K ++ KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTK+VTKF+S
Sbjct:    8 MAKTPSKKAA-APKKAGGK-RSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSS 120

[Close]

BLAST of mRNA_A-nodosum_M_contig1097.10.1 vs. uniprot
Match: A0A7S2U5X6_9STRA (Histone H2B (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5X6_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.920e-56
Identity = 95/112 (84.82%), Postives = 103/112 (91.96%), Query Frame = 0

Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDAFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKSVTK 112
            MAKTPSKKSA VPKKA   K+  KR+ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTK+VTK
Sbjct:    6 MAKTPSKKSA-VPKKASTGKRNKKRVESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTK 116

[Close]

BLAST of mRNA_A-nodosum_M_contig1097.10.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 179 bits (454), Expect = 3.090e-56
Identity = 98/119 (82.35%), Postives = 110/119 (92.44%), Query Frame = 0

Query:    1 MAKTPSKKS-AKVPKKA--GDKKK-ANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDAFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKSVTKFTS 115
            MAKTPSK++ AK  KKA  GDKKK + KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTK+VTKF+S
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSS 119

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig1097.10.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig1097.10.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWI8_ECTSI	2.450e-68	94.83	Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
A0A6U0X3U9_9STRA	1.010e-61	86.21	Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R...	[more]
A0A836CJ22_9STRA	1.560e-60	86.32	Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A485K2U0_9STRA	4.630e-60	84.75	Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep...	[more]
H2B_OLILU	7.960e-60	84.35	Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830...	[more]
A0A836CJT3_9STRA	1.040e-58	86.32	Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R...	[more]
B7FWR8_PHATC	4.040e-58	82.76	Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re...	[more]
A0A6U6DWX5_9STRA	1.580e-56	83.48	Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ...	[more]
A0A7S2U5X6_9STRA	1.920e-56	84.82	Histone H2B (Fragment) n=1 Tax=Attheya septentrion...	[more]
B8BX20_THAPS	3.090e-56	82.35	Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 29..47 score: 84.56 coord: 87..100 score: 90.61 coord: 48..68 score: 66.67 coord: 70..87 score: 56.83 coord: 100..113 score: 85.78
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 19..115 e-value: 4.0E-67 score: 239.0
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 3..116
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 84..106
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..116 e-value: 3.0E-54 score: 184.4
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 4..116
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 2..92 e-value: 2.5E-17 score: 63.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR23428:SF256	HISTONE H2B.6	coord: 3..116

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig1097	contig	A-nodosum_M_contig1097:183978..184328 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig1097.10.1	mRNA_A-nodosum_M_contig1097.10.1	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig1097 183978..184328 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig1097.10.1 ID=prot_A-nodosum_M_contig1097.10.1|Name=mRNA_A-nodosum_M_contig1097.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=117bp
MAKTPSKKSAKVPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDAFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKSVTKFTSS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000558	Histone_H2B
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3