prot_A-nodosum_M_contig1091.3.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1091.3.1
Unique Nameprot_A-nodosum_M_contig1091.3.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length691
Homology
BLAST of mRNA_A-nodosum_M_contig1091.3.1 vs. uniprot
Match: D7G0F0_ECTSI (Tau95 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F0_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 2.710e-88
Identity = 221/518 (42.66%), Postives = 285/518 (55.02%), Query Frame = 0
Query:   10 WSIASVEVVGAVHTSFTFNSLADAQFVSCRPRDVRA--------EDKIDELITAAAARTEPMELVPQSFLPSFPRVSDESRAE------KILRKEKKQNEAVKLERGELLVYHRFGEDVKHRTKKGAAIMKEARAIEHLQQELDAKWGTGKKSDPGRPNRPSRLRLGISGYNEVKEQELMLVLKMIKIYESKPMYLMSELHSFFSREASWPVRHIVPVLAYHCCNGPWRSRWVRFGYCPEDHPVDRFEQMFEFRLSPGQLREWRETLKKI--------EALAPKKKTARDRTKTTTTNSRAKVNDGRNGDDDDMEEKEMDEGSRRDRGDREKELGGDNGDSAGGAKDEERRPGGDVDDAAVAAAVAAVDALQRSGEVDAEKSGXXXXXXXXXXXXXXXXDGPAGEEGVARKRGDGGPGSGRGGGPDVLRSGGVTPEVVLAAKTKGRFASQVVVNGHPLTARNRQIVHESPFRTVQEVALRSSRLDQPNSLTGWWPQATIDKMRHLTLEGIHETIRLKQ 505
            WSIASV  VG VHT+F FN+LADAQ V      VR                      +   M + P+  L   P V+  + +E      KILR+E+K ++ VKL+RG LLVYHRFGE VKH TK GA ++++A+ +EHL+ ELD KWG+G++   GR NRPSR R GISG+NEV+EQ L+LV K++K++E +PMY M EL      + +WP+R +VP +AY+ CNGPWRSRWVRFGY PEDHP DRFEQ+ EFRL P QLR W   L++         + LAP   T+    KT                        + EG R                                  A+V A VA V        V+AE   XXXXXXXXXXXXX    G      +  +R               L  GGV PEV L ++ KGRFASQ+V+NG+ L+ARNR +V ESP R VQE+AL++ R+D+P  +TGWW Q TIDKMR LTLE +   ++ K+
Sbjct:   85 WSIASVTAVGEVHTTFAFNALADAQVVEVTQLKVRGGGGGXXXXXXXXXXXXXXXQEKALKMYMRPKDPL-CRPMVAQRNASETNSFIFKILRRERKHHDTVKLQRGSLLVYHRFGEAVKHVTKSGAILIRDAKEVEHLRVELDRKWGSGRQR--GRKNRPSRYRKGISGHNEVREQRLLLVQKIVKLFEKQPMYFMRELEEHMQDQPTWPIRDLVPAVAYYYCNGPWRSRWVRFGYRPEDHPSDRFEQILEFRLFPAQLRVWAAALEQAGVKKSSTPKVLAPVVATSSPAAKTAAXXXXXXXXXXX------XXXXXVREGGR---------------------------------GASVTAPVAKV--------VEAEMEEXXXXXXXXXXXXXKKDAGLT----LTSQR---------------LSVGGVVPEVGLTSRPKGRFASQLVLNGNILSARNRHVVGESPIREVQELALKAPRMDRPGIVTGWWQQGTIDKMRMLTLEALSALVKHKK 533          
BLAST of mRNA_A-nodosum_M_contig1091.3.1 vs. uniprot
Match: A0A6H5KH63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH63_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 8.600e-17
Identity = 50/111 (45.05%), Postives = 70/111 (63.06%), Query Frame = 0
Query:  415 LRSGGVTPEVVLAAKTKGRFASQVVVNGHPLTARNRQIVHESPFRTVQEVALRSSRL--------------------DQPNSLTGWWPQATIDKMRHLTLEGIHETIRLKQ 505
            L  GG+ PEV LA++ KGRFASQ+++NG+ L+ARNR +V ESP R VQE+AL++ R+                    D+P  +TGWW Q T+DKMR LTLE +   ++ K+
Sbjct:  300 LSVGGIVPEVGLASRPKGRFASQLLLNGNVLSARNRHVVGESPIREVQELALKAPRMGGGNVSALRRVLAPRILLAQDRPGIVTGWWQQGTMDKMRMLTLEALSTLVKHKK 410          
BLAST of mRNA_A-nodosum_M_contig1091.3.1 vs. uniprot
Match: K1P552_CRAGI (General transcription factor 3C polypeptide 5 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1P552_CRAGI)

HSP 1 Score: 64.7 bits (156), Expect = 3.190e-7
Identity = 29/100 (29.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query:  150 PGRPNRPSRLRLGISGYNEVKEQELMLVLKMIKIYESKPMYLMSELHSFFSREASWPVRHIVPVLAYHCCNGPWRSRWVRFGYCPEDHPVDRFEQMFEFR 249
            P +P   + + L +  YN  + +E     ++ K++E +P++  + L+SF++ +    +++++P+++++  NGPWR +WVRFGY P  HP  +  Q+ ++R
Sbjct:  226 PEKPQEEAVVSLRLK-YNAPQGEE-----ELAKLFEQRPVWSRTALNSFYTGKLD-KLKYLLPLVSFYYLNGPWRCQWVRFGYDPRKHPEAKMYQIVDYR 318          
BLAST of mRNA_A-nodosum_M_contig1091.3.1 vs. uniprot
Match: UPI001CFD6ADC (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD6ADC)

HSP 1 Score: 60.5 bits (145), Expect = 9.430e-6
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 0
Query:  187 KPMYLMSELHSFF-SREASWPVRHIVPVLAYHCCNGPWRSRWVRFGYCPEDHPVDRFEQMFEFRLSPGQLREWRETLKKIEALAPKKK 273
            +P++  S + S F SR+  W +R ++P +AYH  NGPWR  WVR+GY P+      + Q+ +FR+ P +LR       KI +L  K+K
Sbjct:  395 RPIWSKSAISSKFESRKDKWKLRMVLPRVAYHYKNGPWRMLWVRYGYDPKKDVSASYYQLLDFRV-PHELRP------KIHSLTGKRK 475          
BLAST of mRNA_A-nodosum_M_contig1091.3.1 vs. uniprot
Match: A0A6A5CF63_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5CF63_NAEFO)

HSP 1 Score: 60.1 bits (144), Expect = 1.270e-5
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 0
Query:  198 FFSREASWPVRHIVPVLAYHCCNGPWRSRWVRFGYCPEDHPVDRFEQMFEFRLSPGQLREWRETLKKIEALAPKKK 273
            F SR+  W +R ++P +AYH  NGPWR  WVR+GY P+      + Q+ +FR+ P +LR       KI +L  K+K
Sbjct:  434 FESRKDKWKLRMVLPRVAYHYKNGPWRMLWVRYGYDPKKDIAASYYQLLDFRV-PHELRP------KIHSLTGKRK 502          
BLAST of mRNA_A-nodosum_M_contig1091.3.1 vs. uniprot
Match: A0A3M7QTK3_BRAPC (General transcription factor 3C polypeptide 5 (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7QTK3_BRAPC)

HSP 1 Score: 57.8 bits (138), Expect = 4.590e-5
Identity = 31/98 (31.63%), Postives = 56/98 (57.14%), Query Frame = 0
Query:  153 PNRPSRLRLGISGYNEVKEQELMLVLKMIKIYESKPMYLMSELHSFFSREASWPVRHIVPVLAYHCCNGPWRSRWVRFGYCPEDHPVDRFEQMFEFRL 250
            P++PS  +L  +   +++E     + K+ ++++ +P YL S L    +  AS  ++  +P +AY+   GPWRS WV++GY P  H   +  QM ++RL
Sbjct:  292 PDKPSE-KLKPARTEQIRE----CITKLTELFQQRPCYLKSVLLCITNFSASL-LKETLPYVAYYFTTGPWRSCWVKYGYDPRKHCGAKIYQMIDYRL 383          
BLAST of mRNA_A-nodosum_M_contig1091.3.1 vs. uniprot
Match: A0A821NDF8_9NEOP (Hypothetical protein n=4 Tax=Pieris TaxID=7115 RepID=A0A821NDF8_9NEOP)

HSP 1 Score: 57.8 bits (138), Expect = 4.760e-5
Identity = 24/69 (34.78%), Postives = 43/69 (62.32%), Query Frame = 0
Query:  182 KIYESKPMYLMSELHSFFSREASWPVRHIVPVLAYHCCNGPWRSRWVRFGYCPEDHPVDRFEQMFEFRL 250
            K+++ +P++  + +    +R  +  ++ I+P +A+H  NGPW+  WV+FGY P   P  R+ QM +FRL
Sbjct:  238 KMFDERPVWSFNHI-KHHTRLRTVNLKVILPCIAFHNLNGPWKLLWVKFGYDPRKEPYARYYQMLDFRL 305          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1091.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G0F0_ECTSI2.710e-8842.66Tau95 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KH63_9PHAE8.600e-1745.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K1P552_CRAGI3.190e-729.00General transcription factor 3C polypeptide 5 n=2 ... [more]
UPI001CFD6ADC9.430e-638.64uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5CF63_NAEFO1.270e-540.79Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A0A3M7QTK3_BRAPC4.590e-531.63General transcription factor 3C polypeptide 5 (Fra... [more]
A0A821NDF8_9NEOP4.760e-534.78Hypothetical protein n=4 Tax=Pieris TaxID=7115 Rep... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019136Transcription factor IIIC subunit 5, HTH domainPFAMPF09734Tau95coord: 125..249
e-value: 1.1E-14
score: 55.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 269..283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 617..631
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 569..690
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 305..343
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 269..420
NoneNo IPR availablePANTHERPTHR13230:SF5GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 5coord: 14..668
IPR040454Transcription factor IIIC subunit Tfc1/Sfc1PANTHERPTHR13230GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5coord: 14..668

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1091contigA-nodosum_M_contig1091:249122..256494 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1091.3.1mRNA_A-nodosum_M_contig1091.3.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1091 233393..256900 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1091.3.1 ID=prot_A-nodosum_M_contig1091.3.1|Name=mRNA_A-nodosum_M_contig1091.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=691bp
MSGSSRSDSWSIASVEVVGAVHTSFTFNSLADAQFVSCRPRDVRAEDKID
ELITAAAARTEPMELVPQSFLPSFPRVSDESRAEKILRKEKKQNEAVKLE
RGELLVYHRFGEDVKHRTKKGAAIMKEARAIEHLQQELDAKWGTGKKSDP
GRPNRPSRLRLGISGYNEVKEQELMLVLKMIKIYESKPMYLMSELHSFFS
REASWPVRHIVPVLAYHCCNGPWRSRWVRFGYCPEDHPVDRFEQMFEFRL
SPGQLREWRETLKKIEALAPKKKTARDRTKTTTTNSRAKVNDGRNGDDDD
MEEKEMDEGSRRDRGDREKELGGDNGDSAGGAKDEERRPGGDVDDAAVAA
AVAAVDALQRSGEVDAEKSGKSTESKSRPSAPSGPSDGPAGEEGVARKRG
DGGPGSGRGGGPDVLRSGGVTPEVVLAAKTKGRFASQVVVNGHPLTARNR
QIVHESPFRTVQEVALRSSRLDQPNSLTGWWPQATIDKMRHLTLEGIHET
IRLKQRRAKSAAAAAAAAAAADAATGGPVRDRYHLPKNLSTEEFFRAASL
GEDKVSIVKAPPPYVAAADEERGGPVFPRRIDIPYQGNQQEPCPAEGRGS
FQKDVVRKPGAEGDPEAVTGDGDRETVSSSEVDEEGVSDGLNSSDLMHDT
GDDLFSEEPSDGEDDSQSDTEKKGVEGDGGDKPSMLYGGV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019136TF_IIIC_su-5_HTH
IPR040454TF_IIIC_Tfc1/Sfc1