prot_A-nodosum_M_contig108.4.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig108.4.1
Unique Nameprot_A-nodosum_M_contig108.4.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length590
Homology
BLAST of mRNA_A-nodosum_M_contig108.4.1 vs. uniprot
Match: A0A6H5JK18_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK18_9PHAE)

HSP 1 Score: 479 bits (1232), Expect = 2.930e-154
Identity = 255/422 (60.43%), Postives = 296/422 (70.14%), Query Frame = 0
Query:   10 DSLQCTRGVT---AVAAVSGDLYVCPFLFDFLTVREVGKAACVCRAWREAAEDDELWRELYARTQVAETAMEDWARALAARPFGEDAVGWEVKVCNEEDNTWHQGLVVEYASPFYRVEYPDGSSRWESEQRTQGPWHRRGNSRLFFIGRLHDSIA---GGNNHITSNNGSCSSSSSCGKMPAGPNMSSVSEGM--WGRLRHGGWKEELKANACHVPAVELVRLMDHTDEVLDLKFSPDGTRLATCSRDMSILIYSVEEQEP-----KQEGDDGDKIFAAGAGRGVWGVGAGEGVEAKFGEEGSGRLRSSRQRLGQGRLSVRLIHRLRRSATASVCRIFWSPCSRFILSCLEEPHGDPFEPSSSELWDATLGSWLSRCRSQPFDVHAAWLPDGHHFVAGLDIHRDHSDVNAPFTQTLAIRRRP 418
            DSL  + G     AV+ VSGD YVCPFLFDFLT+ E+G+AA VC  WR  A DDELWR++Y RTQV E  ME+WA++LAARPF EDAVGWEV+V +EED  W  GLVV Y+   Y VEY DGSSRWESE RT+GPWHRRGNSR+ F+GRLHDS+A   GG   + + + S    SS G  PA    +  +     W RLRHG W+EE+KAN CHVPAVELV+L DHTDEVLDLKFSPDGT LATCSRDMSIL+Y++E         K+ G D     A              GV+ +   +G  +LR     LG   L VRLIHRLRRSATASVCRIFWSPC RFILSCLEEP+G+PF PS+SELWDA  G  +SRCRSQPFDVHAAW+PDG HFVAGLD+  D +D   P+TQT AIRRRP
Sbjct:    4 DSLMDSPGFCRRRAVSVVSGDEYVCPFLFDFLTISELGRAASVCSTWRTNAADDELWRDIYERTQVGEAGMEEWAQSLAARPFEEDAVGWEVEVLSEEDVMWTPGLVVAYSGGRYLVEYVDGSSRWESEYRTEGPWHRRGNSRISFLGRLHDSLADADGGAAAVANTHPSAPPDSSRG-APAAAEKAGETRSFPNWPRLRHGRWREEVKANCCHVPAVELVKLDDHTDEVLDLKFSPDGTLLATCSRDMSILVYAIEAMPENHGSLKKGGKDRSPRKARAGXXXXXXXXXDTGVD-EMPRDGQNKLRP----LGFKGLGVRLIHRLRRSATASVCRIFWSPCGRFILSCLEEPNGNPFNPSTSELWDARHGQCISRCRSQPFDVHAAWMPDGEHFVAGLDLTWDETDDTVPYTQTFAIRRRP 419          
BLAST of mRNA_A-nodosum_M_contig108.4.1 vs. uniprot
Match: D7G5J6_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J6_ECTSI)

HSP 1 Score: 369 bits (946), Expect = 1.050e-112
Identity = 216/431 (50.12%), Postives = 246/431 (57.08%), Query Frame = 0
Query:   21 VAAVSGDLYVCPFLFDFLTVREVGKAACVCRAWREAAEDDELWRELYARTQVAETAMEDWARALAARPFGEDAVGWEVKVCNEEDNTWHQGLVVEYASPFYRVEYPDGSSRWESEQRTQGPWHRRGNSRLFFIGRLHDSIAG----GNNHITSNNGSCSSSSSCGKMPAGPNMSSVSEGM--WGRLRHGGWKEELKANACHVPAVELVRLMDHTDEVLDLKFSPDGTRLATCSRDMSILIYSVEEQEPKQEG-------DDGDKIFAAGAGRGVWGVGAGEGVEAKFGEEGSGRLRSSRQRLGQGRLSVRLIHRLRRSATASVCRIFWSPCSRFILSCLEEPHGDPFEPSSSELWDATLGSWLSRCRSQPFDVHAAWLPDGHHFVAGLDIHRDHSDVNAPFTQTLAIRRRPNLAPVFTCGDAVEARTFDPA 438
            V+ V GD YVCPFLFDFLT+ E+G+AA VC  WR  A DDELWRE+Y                                                                    +RTQGPWHRRGNSRL F+GRLHDS+AG    G     SN    + + S    PA    +  +     W RLRHG W+EELKAN CHVPAVELV+L DHTDEVLDLKFSPDGTRLATCSRDMSIL+Y++E   P+  G       DDG +   A             GV+ +   +G  +LR     LG   L VRLIHRLRRSATASVCRIFWSPC RFILSCLEEPHG+PF PSSSELWDA  G  LSRCRSQPFDVHAAW+PDG HFVAGLD+  D +D   P+TQT AIRRRP   P+   G    A +   A
Sbjct:    3 VSVVGGDEYVCPFLFDFLTISELGRAASVCSTWRTNAADDELWREIY--------------------------------------------------------------------ERTQGPWHRRGNSRLSFLGRLHDSLAGQDADGGAAAVSNTPPSTPADSSRGAPAAAEKAGETRSFPDWPRLRHGRWREELKANCCHVPAVELVKLDDHTDEVLDLKFSPDGTRLATCSRDMSILVYAIEAM-PENHGSSKEGEKDDGPRKARASGXXXXXXXXXXXGVD-EMPRDGQNKLRP----LGFKGLGVRLIHRLRRSATASVCRIFWSPCGRFILSCLEEPHGNPFIPSSSELWDAWHGQRLSRCRSQPFDVHAAWMPDGEHFVAGLDLTWDETDDTVPYTQTFAIRRRPT--PITRGGSTAPASSASKA 357          
BLAST of mRNA_A-nodosum_M_contig108.4.1 vs. uniprot
Match: A0A813J8U8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813J8U8_POLGL)

HSP 1 Score: 126 bits (316), Expect = 1.920e-28
Identity = 83/238 (34.87%), Postives = 121/238 (50.84%), Query Frame = 0
Query:   34 LFDFLTVREVGKAACVCRAWREAAEDDELWRELYARTQVAETAM----EDWARALAARPFGEDAVGWEVKVCNEEDNT-WHQGLVVEYASPF--YRVEY------PDGSSRWESEQRTQGPWHRRGNSRLFFIGRLHDSIAGGNNHITSNNGSCSSSSSCGKMPAGPNMSSVSEGMWGRLRHGGWKEELKANACHVPAVELVRLMDHTDEVLDLKFSPDGTRLATCSRDMSILIYSVE 258
            +F F  V+++G      R+W+  A+   +W + Y RTQ  + +     E   R+L  RPFGEDAVGWEV V  E+ +  +  G +V Y      Y V+Y      P G  RWE E+R +    R   S    +G+   +       + +  GS SSSS        P ++           HG WK+EL+ N C+ P+  L RL++H DEVL + FSP GTRLA+CSRD+  +I+ V+
Sbjct:   38 IFRFCGVQDLGACLAADRSWKAVADAHHVWADAYDRTQCVDASSAPNGEGLLRSLIERPFGEDAVGWEVAVLIEDGSERYSTGHIVAYRPEIDSYLVDYGSSSGLPGGDRRWEQERRKRTAAMRHNPS---LLGKSRFNFLSPPKPLAATGGSSSSSSL-------PRLAGC---------HGSWKQELEHNVCNAPSRLLTRLLEHKDEVLFVVFSPCGTRLASCSRDLRTVIFKVK 256          
BLAST of mRNA_A-nodosum_M_contig108.4.1 vs. uniprot
Match: A0A812UCT2_SYMPI (PAP13 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812UCT2_SYMPI)

HSP 1 Score: 115 bits (288), Expect = 1.120e-24
Identity = 83/242 (34.30%), Postives = 122/242 (50.41%), Query Frame = 0
Query:   34 LFDFLTVREVGKAACVCRAWREAAEDDELWRELYARTQVAETAM----EDWARALAARPFGEDAVGWEVKVCNEEDN----TWHQGLVVEYA--SPFYRVEYPDGSSR-------WESEQRTQGPWHRRGNSRLFFIGRLHDSIAGGNNHITSNNGSCSSSSSCGKMPAGPNMSSVSEGMWGRLRHGGWKEELKANACHVPAVELVRLMDHTDEVLDLKFSPDGTRLATCSRDMSILIYSVE 258
            +F F ++R++G +  V R WR A +   +W + Y RTQ  + +     E+  R+L  RPFGEDAVGW V V  E+       ++ G VV Y+  +  Y + Y    ++       WE E+R +    R   S     G+   S      H+  + G+  SSS     P+   + +  E     LR G WKEELK N    P   L +L DH+DEVL + FSP GTRLA+CSRD+  +++ V+
Sbjct:   29 IFRFCSIRDLGASLAVDRHWRAAVDSHHVWADAYDRTQRVDDSSAPSGENLLRSLIERPFGEDAVGWHVAVLAEDHGYSTERYYAGRVVAYSVETDTYLIAYDTEGAQADQPNMHWEQERRKRTAAMRHNPS---LAGKSRFSFLSPPPHLPKS-GAAYSSSVAHAEPS-QKVRARDERSREPLR-GSWKEELKHNVLQAPTQMLTQLNDHSDEVLFVVFSPCGTRLASCSRDLQTIVFKVQ 264          
BLAST of mRNA_A-nodosum_M_contig108.4.1 vs. uniprot
Match: A0A813B4T2_SYMMI (Wdr26 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813B4T2_SYMMI)

HSP 1 Score: 120 bits (300), Expect = 1.420e-24
Identity = 84/243 (34.57%), Postives = 121/243 (49.79%), Query Frame = 0
Query:   34 LFDFLTVREVGKAACVCRAWREAAEDDELWRELYARTQVAETAM----EDWARALAARPFGEDAVGWEVKVCNEE----DNTWHQGLVVEYASPF--YRVEYPDGSSR------WESEQRTQGPWHRRGNSRLFFIGRLHDSIAGGNNHITSNNGSCSSSSSCGKMPAGPNMSSVSEGMWGRLRHGGWKEELKANACHVPAVELVRLMDHTDEVLDLKFSPDGTRLATCSRDMSILIYSVEEQ 260
            +F F ++R++G +  V R WR A +   +W + Y RTQ  + +     ED  R+L  RPFGEDAVGW V V  E+    +  ++ G VV Y++    Y + Y            WE E+R +    R   S     G+   S      H+  + G+ SSSS+    P         E     LR G WKEELK N    P   L +L +H+DEVL + FSP GTRLA+CSRD+  +++ V+ +
Sbjct:  341 IFRFCSIRDLGASLAVDRNWRAAGDSHHVWADAYDRTQRVDDSSAPSGEDLLRSLIERPFGEDAVGWHVAVLAEDHGYSNERYYTGRVVAYSAETDTYLIAYDSEGQEDQPHMHWEQERRKRTAAMRHNPS---LAGKSRFSFLSPPPHLPKS-GAVSSSSTASAGPLQKAARPRDERPREPLR-GSWKEELKHNVLQAPTHMLTQLNEHSDEVLFVVFSPCGTRLASCSRDLQTIVFKVQTE 578          
BLAST of mRNA_A-nodosum_M_contig108.4.1 vs. uniprot
Match: A0A7S0B5Y1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0B5Y1_9DINO)

HSP 1 Score: 105 bits (262), Expect = 1.280e-21
Identity = 83/249 (33.33%), Postives = 115/249 (46.18%), Query Frame = 0
Query:   34 LFDFLTVREVGKAACVCRAWREAAEDDELWRELYARTQVAETAM----EDWARALAARPFGEDAVGWEVKVCNEEDNT-WHQGLVVEY--ASPFYRVEYP---DGS----SRWESEQRTQGPWHRR-----GNSRLFFIGRLHDSIAGGNNHITSNNGSCSSSSSCGKMPAGP----NMSSVSEGMWGRLRHGGWKEELKANACHVPAVELVRLMDHTDEVLDLKFSPDGTRLATCSRDMSILIYSVEE 259
            +F F +V ++G    V + W    +   +W + Y RTQ  ++A     E   RAL  RPFGEDAVGW V V  E+    +  G +V Y   +  Y + Y    DGS      WE E+R +    R      G SR  F+                     S  +   + P G       SS S   W  LR   WK+EL+ N  + P+  L+RL +H DEVL + FSP GTRLA+CSRD+  +I+ V +
Sbjct:   43 VFRFCSVPDLGACLSVSKCWHNVTDAHHVWADAYERTQRVDSASAPAGEGELRALIERPFGEDAVGWRVAVLVEDGTERYATGHIVSYNAEADAYLIAYEEESDGSRSPREAWEQERRKRTAAMRHNPSLAGKSRFSFL---------------------SPPALDWRQPLGGLTPHGRSSGSSRRW-PLRFRSWKQELENNVRNAPSRLLLRLEEHADEVLFVVFSPCGTRLASCSRDLRTVIFRVRQ 269          
BLAST of mRNA_A-nodosum_M_contig108.4.1 vs. uniprot
Match: A0A0G4EZM2_9ALVE (F-box domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4EZM2_9ALVE)

HSP 1 Score: 98.6 bits (244), Expect = 1.240e-17
Identity = 74/253 (29.25%), Postives = 104/253 (41.11%), Query Frame = 0
Query:   40 VREVGKAACVCRAWREAAEDDELWRELYARTQVAE--TAMEDWARALAARPFGEDAVGWEVKVCNEEDNTWHQGLVVEYASP----------FYRVEYPD---GSSRWESEQRTQGPWHRRGNSRLFFIGRLHDSIAGGNNHITSNNGSCSSSSSCGKMPAGPNMSSVSEG-----------------MWG--RLRHGGWKEELKANACHVPAVELVRLMDHTDEVLDLKFSPDGTRLATCSRDMSILIYSVE 258
            V  +   A  C   + A ++  LW  LY RTQ A     + +   +L +RPFG DA+GW V V NE   T+ +G VV++ +           ++ V Y D   G+ +WE+E+R Q  W+  G SR  F  +  D                   S C K  A                           +W     R   W+   K      P   L+ +M H DEVL + FS  G   +TCSRD S+L+YSVE
Sbjct:   21 VASILNVAQTCTYLKTATDNALLWLMLYERTQTAHPRAGVCEKLLSLISRPFGRDAIGWSVSVLNEATKTYREGKVVDFKTENIPSGFAMVSYFGVLYEDDETGTVQWETEERQQDRWYNAGKSRFIFKSKDEDG------------------SGCRKKGASXXXXXXXXXXXXXXXXXXXXXXGVFPLWSLRETRETDWRALTKQTFTGAPRKLLLDVMQHKDEVLHVAFSDCGRFFSTCSRDRSVLVYSVE 255          
BLAST of mRNA_A-nodosum_M_contig108.4.1 vs. uniprot
Match: A0A7S2FRI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FRI1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.220e-11
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 0
Query:  203 GGWKEELKANACHVPAVELVRLMDHTDEVLDLKFSPDGTRLATCSRDMSILIYSV 257
            G WK ELK N   VP V + +L DH+DEVLD  FS DGT+LATCSRD+  LIY V
Sbjct:   40 GTWKNELKQNVECVPQVLIHKLKDHSDEVLDAVFSIDGTKLATCSRDLKTLIYEV 94          
BLAST of mRNA_A-nodosum_M_contig108.4.1 vs. uniprot
Match: A0A813CRT9_9DINO (Wdr26 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CRT9_9DINO)

HSP 1 Score: 68.2 bits (165), Expect = 3.640e-8
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 0
Query:  203 GGWKEELKANACHVPAVELVRLMDHTDEVLDLKFSPDGTRLATCSRDMSILIYSVEEQ 260
            G WKEELK N    P   L +L +H+DEVL + FSP GTRLA+CSRD+  +++ V+ +
Sbjct:  667 GSWKEELKHNVLQAPTHMLTQLNEHSDEVLFVVFSPCGTRLASCSRDLQTIVFKVQTE 724          
BLAST of mRNA_A-nodosum_M_contig108.4.1 vs. uniprot
Match: A0A1Q9CFV0_SYMMI (Uncharacterized protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CFV0_SYMMI)

HSP 1 Score: 68.2 bits (165), Expect = 3.910e-8
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 0
Query:  203 GGWKEELKANACHVPAVELVRLMDHTDEVLDLKFSPDGTRLATCSRDMSILIYSVEEQ 260
            G WKEELK N    P   L +L +H+DEVL + FSP GTRLA+CSRD+  +++ V+ +
Sbjct:  667 GSWKEELKHNVLQAPTHMLTQLNEHSDEVLFVVFSPCGTRLASCSRDLQTIVFKVQTE 724          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig108.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JK18_9PHAE2.930e-15460.43F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G5J6_ECTSI1.050e-11250.12F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A813J8U8_POLGL1.920e-2834.87Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A812UCT2_SYMPI1.120e-2434.30PAP13 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A813B4T2_SYMMI1.420e-2434.57Wdr26 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S0B5Y1_9DINO1.280e-2133.33Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A0G4EZM2_9ALVE1.240e-1729.25F-box domain-containing protein n=1 Tax=Chromera v... [more]
A0A7S2FRI1_9STRA1.220e-1161.82Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A813CRT9_9DINO3.640e-850.00Wdr26 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A1Q9CFV0_SYMMI3.910e-850.00Uncharacterized protein n=2 Tax=Symbiodinium TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 217..256
e-value: 3.2E-7
score: 40.0
IPR001680WD40 repeatPFAMPF00400WD40coord: 227..255
e-value: 0.0014
score: 19.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 224..265
score: 11.811761
IPR001810F-box domainPFAMPF12937F-box-likecoord: 35..68
e-value: 1.3E-6
score: 28.2
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 199..412
e-value: 4.0E-13
score: 51.3
NoneNo IPR availableGENE3D1.20.1280.50coord: 30..119
e-value: 3.3E-9
score: 38.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 491..517
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 224..258
score: 9.282875
NoneNo IPR availableSUPERFAMILY82171DPP6 N-terminal domain-likecoord: 220..400
IPR042508F-box/WD repeat-containing protein 5PANTHERPTHR20995F-BOX/WD REPEAT-CONTAINING PROTEIN 5coord: 34..70
coord: 204..258
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 35..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig108contigA-nodosum_M_contig108:61664..91970 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig108.4.1mRNA_A-nodosum_M_contig108.4.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig108 61664..92105 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig108.4.1 ID=prot_A-nodosum_M_contig108.4.1|Name=mRNA_A-nodosum_M_contig108.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=590bp
MEDINASVSDSLQCTRGVTAVAAVSGDLYVCPFLFDFLTVREVGKAACVC
RAWREAAEDDELWRELYARTQVAETAMEDWARALAARPFGEDAVGWEVKV
CNEEDNTWHQGLVVEYASPFYRVEYPDGSSRWESEQRTQGPWHRRGNSRL
FFIGRLHDSIAGGNNHITSNNGSCSSSSSCGKMPAGPNMSSVSEGMWGRL
RHGGWKEELKANACHVPAVELVRLMDHTDEVLDLKFSPDGTRLATCSRDM
SILIYSVEEQEPKQEGDDGDKIFAAGAGRGVWGVGAGEGVEAKFGEEGSG
RLRSSRQRLGQGRLSVRLIHRLRRSATASVCRIFWSPCSRFILSCLEEPH
GDPFEPSSSELWDATLGSWLSRCRSQPFDVHAAWLPDGHHFVAGLDIHRD
HSDVNAPFTQTLAIRRRPNLAPVFTCGDAVEARTFDPADRPCDRRERVDS
SCMVSSPKPSGKAVPGAGRTAEEVGGVMWVDPAVEDDRVSIGGDGLATAA
GAGKEEGSGAQPDDAAIPFTFGEAAATPASERRGITGRHFGYGGVQPQQQ
QQFHAMDIDDSNGHADHEDWWCSSDWCSDSKQEHGGGGGW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR001810F-box_dom
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR042508FBXW5
IPR036047F-box-like_dom_sf