prot_A-nodosum_M_contig108.35.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig108.35.1
Unique Nameprot_A-nodosum_M_contig108.35.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length296
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig108.35.1 vs. uniprot
Match: A0A6H5KAD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD9_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 3.630e-68
Identity = 140/305 (45.90%), Postives = 180/305 (59.02%), Query Frame = 0 
Query:    1 MPTNDA--WPGASNIANVQHNLLYLGSPALDAGLQVTWGNRPVYWEQIDEPTSPRGRIWRLHTVCWLAVTTTVRAPSPGLYATFFRIRKYAIRSNLLSFSAEWKADA------AGTRERGFLHT-NGRPASGSCTLQESDAIVSWSHRKLDTSVDPGAWMLVHVGNVVVR------RRAHATDGGTGA----------GDDGLDVALSFGGNNSGWCSNLDVDFAAIAPLRLCWDITRVVWIGQMKGQS-----SVGGVTQGATNGDEEAVHPQGGI------SPLYGVPEGLIRLILEFSQPTL 269
            +PT++A  WP A  I    HN L+LG   LD+GL VTWG+   +W +++EPTSPRG IW L+ VCWL+V  TV AP PG YA FFRIR+   R  LL FSAEWK  A      AG  + GFL T + + A G    Q+ +A VSW HR+     +PG W+L+H+GN++VR      + A AT+GG  +          G+ G DVA+SFGG N  W SNL+VDFAAIAPLRL WDI RV+ IG  K  +      +G   +   +   EA    GGI      SPL  +P  ++ L+LEFSQPTL
Sbjct:    8 LPTDEAAVWPRAEQIFG--HNRLHLGRRILDSGLGVTWGDGQ-HWVEVNEPTSPRGSIWHLNRVCWLSVHATVPAPPPGCYAGFFRIRQPIQRRPLLRFSAEWKVAATMAVRPAGD-DFGFLSTTDSQRAEG--VRQDGEASVSWIHRQEYHEDNPGGWLLLHIGNIMVRESSEAQQSAAATEGGASSATIGTGGPAVGNRGRDVAISFGGENPNWMSNLEVDFAAIAPLRLSWDIERVLMIGNRKTDAILPPAELGQAHEEGLDRAVEAAPDDGGIGSHLCCSPLALLPHAVMTLVLEFSQPTL 306
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig108.35.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAD9_9PHAE3.630e-6845.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025886Phloem protein 2-likePFAMPF14299PP2coord: 31..161
e-value: 2.0E-9
score: 37.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 269..295

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig108contigA-nodosum_M_contig108:348464..379079 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig108.35.1mRNA_A-nodosum_M_contig108.35.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig108 347501..379088 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig108.35.1 ID=prot_A-nodosum_M_contig108.35.1|Name=mRNA_A-nodosum_M_contig108.35.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=296bp
MPTNDAWPGASNIANVQHNLLYLGSPALDAGLQVTWGNRPVYWEQIDEPT
SPRGRIWRLHTVCWLAVTTTVRAPSPGLYATFFRIRKYAIRSNLLSFSAE
WKADAAGTRERGFLHTNGRPASGSCTLQESDAIVSWSHRKLDTSVDPGAW
MLVHVGNVVVRRRAHATDGGTGAGDDGLDVALSFGGNNSGWCSNLDVDFA
AIAPLRLCWDITRVVWIGQMKGQSSVGGVTQGATNGDEEAVHPQGGISPL
YGVPEGLIRLILEFSQPTLTQEFDGNSNEPEGDEGNDESGTWRVF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025886PP2-like