prot_A-nodosum_M_contig105.44.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig105.44.1
Unique Nameprot_A-nodosum_M_contig105.44.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length398
Homology
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BLAST of mRNA_A-nodosum_M_contig105.44.1 vs. uniprot
Match: D7FQD2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD2_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 2.410e-89
Identity = 178/389 (45.76%), Postives = 234/389 (60.15%), Query Frame = 0 
Query:   17 RRGRSLEEGSERGGQNEPHASTLVLLCLTSLESSLGNGLATLSLEELPIVLADQIYNFIFSRGSRMAQMEISKALAPIMRHHINSFDCSRSRI-GNSALLQLASGCGSGLVHLDLSECLFLGNNGILDLMFKCPSIRTLSLSGCNRVSDQVAHHLPYRTXXXXRLDLAGVEGITESGVAYISFLPALEKLCLARCKIGDAAVASLGAGVCRHSIRWLDLTGTGVRDVCIPSLRNML-LEYVALSSTSISVVAMAALARDLRLPALLPEAPKTRARCNRTLLMGSTWSQHQLGHVPRKRASSRRS---GAPFHHEHGTVRRSCAEGRSGD---MRLI-TPDNISAYNPSASGGQ-VEIGFREAEERAERRGRELVANLVRGIVDLWPAKP 395
            RR      G   G + E    TL +LCL SLESSLG GLAT  L++LP+ LA+ +Y+F+ S GSRMA MEI +ALAPI+R H++S D SR++I G+SALL+LA+GC S LV L+LS C F+ +  +L  + KCP ++ L+                   XXXX            SGVAYI++LPALE+LCLARC + DAAV ++  GVCR S+RWLDLT T +      SLR++  LE             +AALARDLRLPA LPEAPKTRAR +R LL+GS WS+ QL  +P+KRA++  +   GAP      ++       R G    MRLI     +S+ + S      VE+GFR  ++  E  GR+L+ NLV+GIV LWPA P
Sbjct:   32 RRTGPASSGVRSGSEREVEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHVSSLDFSRAKIVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGVKDLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCNVSDAAVVAITTGVCRQSLRWLDLTCTAISAAAAASLRDLQRLEXXXXXXXXXXXXXVAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGAPAKSWRNSIASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFR--DDGIEEGGRKLLLNLVQGIVRLWPAVP 418
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig105.44.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQD2_ECTSI2.410e-8945.76Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 174..199
e-value: 18.0
score: 12.6
coord: 148..169
e-value: 21.0
score: 12.1
coord: 122..147
e-value: 110.0
score: 6.5
coord: 200..223
e-value: 21.0
score: 12.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 187..276
e-value: 3.7E-9
score: 38.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 37..186
e-value: 1.1E-14
score: 56.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 310..329
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 54..226
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 98..272

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig105contigA-nodosum_M_contig105:539444..546633 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig105.44.1mRNA_A-nodosum_M_contig105.44.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig105 539296..547425 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig105.44.1 ID=prot_A-nodosum_M_contig105.44.1|Name=mRNA_A-nodosum_M_contig105.44.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=398bp
MDSPPLHGWTAHSRWSRRGRSLEEGSERGGQNEPHASTLVLLCLTSLESS
LGNGLATLSLEELPIVLADQIYNFIFSRGSRMAQMEISKALAPIMRHHIN
SFDCSRSRIGNSALLQLASGCGSGLVHLDLSECLFLGNNGILDLMFKCPS
IRTLSLSGCNRVSDQVAHHLPYRTPSLTRLDLAGVEGITESGVAYISFLP
ALEKLCLARCKIGDAAVASLGAGVCRHSIRWLDLTGTGVRDVCIPSLRNM
LLEYVALSSTSISVVAMAALARDLRLPALLPEAPKTRARCNRTLLMGSTW
SQHQLGHVPRKRASSRRSGAPFHHEHGTVRRSCAEGRSGDMRLITPDNIS
AYNPSASGGQVEIGFREAEERAERRGRELVANLVRGIVDLWPAKPIL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf