prot_A-nodosum_M_contig104.10.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig104.10.1
Unique Nameprot_A-nodosum_M_contig104.10.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length414
Homology
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BLAST of mRNA_A-nodosum_M_contig104.10.1 vs. uniprot
Match: D7G5B2_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B2_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.800e-13
Identity = 37/62 (59.68%), Postives = 38/62 (61.29%), Query Frame = 0 
Query:    1 MRNKRCLATGCYRNPHYGVSRLIDPNSKAQYCTQHKAPGMQNVNGGRCAGPDCSKQPRFSLP 62
            MRNKRCL  GCYRNPHYGVSRLIDPNSKAQYCT+                      PRFSLP
Sbjct:   40 MRNKRCLEPGCYRNPHYGVSRLIDPNSKAQYCTKXXXXXXXXXXXXXXXXXXXXXXPRFSLP 101
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig104.10.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5B2_ECTSI2.800e-1359.68EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043822EsV-1-7 cysteine-rich motifPFAMPF19114EsV_1_7_cyscoord: 6..43
e-value: 4.8E-5
score: 23.8
coord: 85..118
e-value: 2.7E-7
score: 31.0
coord: 48..80
e-value: 7.4E-8
score: 32.8
NoneNo IPR availableGENE3D6.10.140.110coord: 25..88
e-value: 2.4E-8
score: 36.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..193
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..221

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig104contigA-nodosum_M_contig104:172598..181030 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig104.10.1mRNA_A-nodosum_M_contig104.10.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig104 170007..181140 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig104.10.1 ID=prot_A-nodosum_M_contig104.10.1|Name=mRNA_A-nodosum_M_contig104.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=414bp
MRNKRCLATGCYRNPHYGVSRLIDPNSKAQYCTQHKAPGMQNVNGGRCAG
PDCSKQPRFSLPGQKGKYCSKHREEGMVDVLYTPCAAAGCKKHPHFGFIE
GGPRFCAQHRAQGMVDVKHRRCAVKGCRLDRIQIIAGCRKRGKFCEVHTS
EQDAFEASSEGHAQTDREVSSSDGASNGKKRERDLKAEIEDESVYMSSEG
SQRGASMDDIGSGLFDSPAGRSISMMPGELASSACQGYPSAHAEMRQRTF
AWNVEAAVPRDRIRTLVEIKRRRETHDHSMAVQASRGAVDADIDEGGQRG
APTPYFYGVGPATYPYPLFQRTQAKRTKRETSFAKRVSGPLPFSSHAKLQ
VRPDVNPDVNPEVKPFRLRCEDQTPHSSDMSWYPCPWEFTREDRRTRLSG
TTSRWFPSGDAPY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043822EsV_1_7_cys