prot_A-nodosum_M_contig103.29.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig103.29.1
Unique Nameprot_A-nodosum_M_contig103.29.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length229
Homology
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BLAST of mRNA_A-nodosum_M_contig103.29.1 vs. uniprot
Match: D7G213_ECTSI (TLC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G213_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.900e-34
Identity = 81/165 (49.09%), Postives = 111/165 (67.27%), Query Frame = 0 
Query:    1 MAHSAESLMGTSKLPAGMELYSFMFVNSDPSVLAGHVEAGKLPAPATLLVGVGVGGVLTLVRVLLDFAVYKPLARMILGIPRRQKEQTRIAGLDAMCSRSKKPSAEEVAKEAAAAGVLEEEAMQYVSTKKEIFEETKKINKFKEAAWRLTIYLTLVAYALKLCYG 165
            M  SAE   G+ +LP GM  YSFMF   D  +L G+V+AGKLPAP++L++G+ +G VLT  R+ LD  V+KPLAR ILG PRRQ     I  LD +C++SK  S EEVA+ +A++G+ +EE   Y   ++    E KK+ KFKEAAWRL +Y++LV Y L++  G
Sbjct:    1 MVGSAEG-SGSGELPVGMCFYSFMF--DDQHLLPGYVKAGKLPAPSSLVLGMAMGVVLTGARLALDMIVFKPLARSILGFPRRQNRA--IPALDHLCAKSKLLSPEEVAQASASSGLSQEEVKTYAKGRRLSALEDKKVGKFKEAAWRLVVYMSLVIYGLRVASG 160
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig103.29.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G213_ECTSI2.900e-3449.09TLC domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig103contigA-nodosum_M_contig103:321318..342424 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig103.29.1mRNA_A-nodosum_M_contig103.29.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig103 318289..342478 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig103.29.1 ID=prot_A-nodosum_M_contig103.29.1|Name=mRNA_A-nodosum_M_contig103.29.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=229bp
MAHSAESLMGTSKLPAGMELYSFMFVNSDPSVLAGHVEAGKLPAPATLLV
GVGVGGVLTLVRVLLDFAVYKPLARMILGIPRRQKEQTRIAGLDAMCSRS
KKPSAEEVAKEAAAAGVLEEEAMQYVSTKKEIFEETKKINKFKEAAWRLT
IYLTLVAYALKLCYGVFGSRTLIASGMIGPQGQRAKALSSSTTARWACTG
TLLSSSSGKPADRTSIRCSCITWRPCSC*
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