prot_A-nodosum_M_contig1028.14.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig1028.14.1
Unique Name	prot_A-nodosum_M_contig1028.14.1
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	1089

Homology

[Close]

BLAST of mRNA_A-nodosum_M_contig1028.14.1 vs. uniprot
Match: A0A6H5KJS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS1_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.350e-11
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 0

Query:  266 SALMRRMTEAGRNGRWRDVQPALEEMLAQGLVSDGRPFTVAIKALGD 312
            +A MRRMTEAG+ GRWRDV PALEEML  GLV+DGRP+TVAIKALGD
Sbjct:  205 AAFMRRMTEAGKRGRWRDVVPALEEMLNLGLVTDGRPYTVAIKALGD 251

[Close]

BLAST of mRNA_A-nodosum_M_contig1028.14.1 vs. uniprot
Match: D7G0E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E7_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 6.880e-11
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0

Query:  259 RQMATRTSALMRRMTEAGRNGRWRDVQPALEEMLAQGLVSDGRPFTVAIKALGD 312
            ++ A+  +A MRRMTEAG+ GRWRDV PALEEM + GLV+DGRP+TVAIKALGD
Sbjct:   30 KKSASAAAAFMRRMTEAGKRGRWRDVVPALEEMRSLGLVTDGRPYTVAIKALGD 83

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig1028.14.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig1028.14.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KJS1_9PHAE	1.350e-11	80.85	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G0E7_ECTSI	6.880e-11	70.37	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 265..364 e-value: 9.3E-19 score: 70.0 coord: 973..1082 e-value: 4.5E-18 score: 67.8 coord: 365..468 e-value: 1.4E-32 score: 115.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 469..540 e-value: 4.5E-14 score: 54.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 834..972 e-value: 8.8E-29 score: 102.8 coord: 696..833 e-value: 3.4E-37 score: 130.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 701..744 e-value: 8.9E-8 score: 32.2 coord: 475..522 e-value: 2.1E-10 score: 40.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 393..451 e-value: 1.7E-15 score: 56.9 coord: 757..814 e-value: 5.3E-7 score: 29.6 coord: 1010..1069 e-value: 7.0E-5 score: 22.8 coord: 322..382 e-value: 3.8E-8 score: 33.3 coord: 938..998 e-value: 0.0028 score: 17.7 coord: 866..927 e-value: 1.1E-4 score: 22.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 303..335 e-value: 5.6E-4 score: 17.9 coord: 845..878 e-value: 0.0023 score: 16.0 coord: 477..510 e-value: 1.7E-6 score: 25.8 coord: 770..804 e-value: 2.3E-7 score: 28.5 coord: 917..951 e-value: 0.002 score: 16.2 coord: 701..734 e-value: 5.4E-8 score: 30.5 coord: 735..769 e-value: 0.0028 score: 15.7 coord: 336..370 e-value: 1.8E-6 score: 25.8 coord: 372..406 e-value: 3.4E-7 score: 28.0 coord: 990..1022 e-value: 5.0E-4 score: 18.1 coord: 407..440 e-value: 1.6E-8 score: 32.2 coord: 443..476 e-value: 0.0016 score: 16.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 299..333 score: 9.930995
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 987..1021 score: 9.350046
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 405..439 score: 13.42765
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 1022..1056 score: 9.163705
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 915..949 score: 11.049048
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 768..802 score: 12.638436
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 733..767 score: 9.54735
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 370..404 score: 12.002681
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 440..474 score: 8.659485
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 334..364 score: 9.952918
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 475..509 score: 11.969797
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 698..732 score: 11.39981
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 576..616
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 586..600
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 641..667
None	No IPR available	PANTHER	PTHR47932:SF44	ATPASE EXPRESSION PROTEIN 3	coord: 270..538 coord: 701..971 coord: 835..1065
None	No IPR available	PANTHER	PTHR47932	ATPASE EXPRESSION PROTEIN 3	coord: 270..538 coord: 701..971 coord: 835..1065

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig1028	contig	A-nodosum_M_contig1028:222046..245584 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig1028.14.1	mRNA_A-nodosum_M_contig1028.14.1	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig1028 221127..245646 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig1028.14.1 ID=prot_A-nodosum_M_contig1028.14.1|Name=mRNA_A-nodosum_M_contig1028.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1089bp
MFHTECAVCFHGAKVPCRNTSAELACGFPATLPTSAVHQTRSTPQSHVQG
RARGVALASVCRQPAFAARAPSICPTHCGLSSQRRRLHISAVEASAADFN
LGVVGNGRDRKGTSNGGVGKSRVAAESGAAPIKFDPVTAKKISSSASRGP
MTVDNGAPYEPIKVTRNSPGDSWDSTNNCKINSVAKVVGTQQAATATRAS
NGCDVLIGPGLSTSMPAGALGMPTSPSGANVVPAREVAEARFPSTSSTRA
VVPPRRTERQMATRTSALMRRMTEAGRNGRWRDVQPALEEMLAQGLVSDG
RPFTVAIKALGDNGQTKQALQLLQTMRDAGVTPNEYSYTAVANACARTGD
WVLALRLLKEMRERDGLTPNNFTYTAAVTACGRGGNLEGAMGLLEEMQQE
GIRPNCYTYNSAIHACARKGKWQDALQLMEKMKAEGLAPTVATYSCVADA
CAKGGNSTGALEILDEARLSGLEIDEVLYNTVMEACGAAGKTKLALSLLE
AMRKDGVQPSPTTYTTAITACSRTADWKRALMLLVEMRTAFPSRALHVAA
VTTPSALANSSGAAAITAVAAGGKATDTPLPSRADEKPASAKEEARGLDS
SNRGAGEAGEGSFAGPDWWGRGNVHDVFGFGAGAAGAAASPAAAKDDGRR
RRLRGSQGAGDGSVVSDDGKKESVDGYVRGAWGKGVGVSGRIAIADGQRA
AYNAAINVCGRAGRWDRALCLLEEMPAYGITPDIVSYNSAICACSHRARW
EKATGLLAEVWLAGLKPDAYSYSSAIHACAGAGRWEEAMSLLREMESVGL
GPNVVAYGAAMSALANGRQWERALKLLDEVSSRSKASKVRPNAVLYGAAI
RACSTAGKWRVGLELLEKMHSADGVKPSLVCFNAALHGMATAGEAGRARE
LLESMQRGPRVTRPDIYSYNSAIAACGPGGKAAEARALLEDMRRHGTAPD
VFSFNGVMQANVGGGNWAAALEASVLEEIGREGLTPDATSFNIAVHACAV
GCRWQTAMDVLEEMTEAGMPMDAFTYAHAIEACCNAGNRVAAVALVAELR
DKGLPLRMATYKLITEAFGSDALALVARSPPPPEAFFY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat