prot_A-nodosum_M_contig1005.19.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1005.19.1
Unique Nameprot_A-nodosum_M_contig1005.19.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length639
Homology
BLAST of mRNA_A-nodosum_M_contig1005.19.1 vs. uniprot
Match: A0A6H5KJI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI2_9PHAE)

HSP 1 Score: 720 bits (1858), Expect = 5.210e-253
Identity = 415/632 (65.66%), Postives = 473/632 (74.84%), Query Frame = 0
Query:   32 LILRAGEAMVRAARAMAEAGLRERGPEFAALEAAALGAVAALLPGLATSGDG-SNATGIAEAVVSLVRHCWEG---GTGVAGREVVALAAGRLLLSSTSVLPPHALEASAAVNALLKEASQVSQSLPVGARVLLYESLSAFLLPPKLLEGDMRRVNDLDGRSRAYSEMLAPVLVAFSAAHAGWQNWTGPSPWPGFSDAGVSGALCASCRIISRLCRSFTSTPSKARRVLYQALEPALRPIVALASPLLENA-SGNSKEAASAARALLKMQVSVVETLGQEAGPSFASEAVGSLAAASPHGGVGGGS----------GGRLGGA-GPAWLSSAVFRLLTSVVRTRNASTKALVPQACGLALGRLHALGRLTGGQRVASEGWGDGWLEGPVVETLPEFLDLSKELLVTQWHCFVPSAASRGM-ATSLASAIAARSQRQDAAGSPNDGRGENLSGTGFASEEMASHFGGLMYVLRLTLSLPTKSSGG--------GSGQEGHSVPPDVVRRGLQVLEGAHREAGGLFRFPPFASRWLEPILTDALRGLTEGAHPLLQEEVRHLVFGMAEIDHASFVTQFLPHFLATHYSWLGETHKEALLSPWRAGTHLDAPTFSSFLEDFVSDLGFFRAQAEAA 638
            L++RAGEA+VRAA  MA AGL  RGPEFAAL+AAAL AV  LLPGLA  GDG SNAT IAEAVV+LVR CWE    G G  GREVV ++AGRLLLS  +VLPP +LEAS AV  LLK++SQV+ +LPV ARVLLY SLSAFL+PP+LL GDM +VNDL+GRSRAYSE++APVL  FSAA AGWQ WTGP PWPGFSD GVS  L  SCR++SRLCR+F STP+KARRVL+QA+ PAL PIV L  PLLE A +G SKEA SAA+ LL++QVSVVE LG+EAGP+FAS AVGSL+AA    GVGG            G + G A GP WLSS  FRLL SV++ RN  T+ALVPQAC LALGRLHALGRLT   + AS GWG+ WLEGPVV+TLP+FLDLSKELLVTQ HCF PS ++ G+  TSLASA++AR+      G             GFASE MA+HF GLM V RL LSLPT  +               GHSVPPD+VRRGL VLE +HR  GGLFRFPPFA+ WL+P+LTDAL GL EGAHPL  EEV  LVF +AE+DH +F T+FLPHFL THYSWLG   KEALL+PWRAGTHLD PTFSSFLE  VSDL FFRAQA AA
Sbjct:   25 LLMRAGEAVVRAAGTMASAGLHVRGPEFAALQAAALSAVGGLLPGLAAGGDGDSNATAIAEAVVALVRSCWESASEGDGD-GREVVPVSAGRLLLSLNTVLPPSSLEASQAVATLLKQSSQVAATLPVAARVLLYSSLSAFLMPPRLLHGDMGKVNDLEGRSRAYSELVAPVLGPFSAALAGWQGWTGPPPWPGFSDEGVSRELSCSCRVLSRLCRTFVSTPAKARRVLFQAVSPALSPIVTLVPPLLEQALAGGSKEAGSAAQGLLRLQVSVVECLGKEAGPTFASSAVGSLSAA----GVGGXXXXXXXXXXXXGAQHGAAAGPPWLSSGSFRLLASVLKARNKETRALVPQACELALGRLHALGRLTSMDQGAS-GWGERWLEGPVVDTLPDFLDLSKELLVTQLHCFQPSTSATGVPGTSLASALSARASLS---GXXXXXXXXXXXXXGFASEAMATHFSGLMTVFRLLLSLPTPPASSPLPGXXXXXXXXXGHSVPPDLVRRGLSVLEASHR-TGGLFRFPPFAATWLQPLLTDALWGLAEGAHPLTHEEVHRLVFDLAEVDHRAFATEFLPHFLGTHYSWLGAEQKEALLAPWRAGTHLDMPTFSSFLEALVSDLSFFRAQANAA 646          
BLAST of mRNA_A-nodosum_M_contig1005.19.1 vs. uniprot
Match: D7FYJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ7_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 6.200e-88
Identity = 155/224 (69.20%), Postives = 179/224 (79.91%), Query Frame = 0
Query:   32 LILRAGEAMVRAARAMAEAGLRERGPEFAALEAAALGAVAALLPGLATSGDG-SNATGIAEAVVSLVRHCWEGGT---GVAGREVVALAAGRLLLSSTSVLPPHALEASAAVNALLKEASQVSQSLPVGARVLLYESLSAFLLPPKLLEGDMRRVNDLDGRSRAYSEMLAPVLVAFSAAHAGWQNWTGPSPWPGFSDAGVSGALCASCRIISRLCRSFTSTPSK 251
            L++RAGEA+VRAA  MA AGL  RGPEFAAL+AAAL AV  LLPGLA   DG +NAT IAEAVV+LVR CWE      G  GREVV ++AGRLLLS  +VLPP +LEAS AV ALLK++SQV+ +LPV ARVLLY SLSAFL+PP+LL GDM +VNDL+GRSRAYSE++ PVL  FSAA AGWQ WTGP PWPGFSD GVS  L  SCR++SRLCR+F STP+K
Sbjct:   22 LLMRAGEAVVRAAATMASAGLHVRGPEFAALQAAALSAVGGLLPGLAAGSDGDNNATAIAEAVVALVRSCWESAASEGGGDGREVVPVSAGRLLLSLNTVLPPSSLEASQAVAALLKQSSQVAATLPVAARVLLYSSLSAFLMPPRLLHGDMGKVNDLEGRSRAYSELVTPVLGPFSAALAGWQGWTGPPPWPGFSDEGVSRELSCSCRVLSRLCRTFVSTPAK 245          
BLAST of mRNA_A-nodosum_M_contig1005.19.1 vs. uniprot
Match: D7FYJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ8_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 1.050e-75
Identity = 123/173 (71.10%), Postives = 135/173 (78.03%), Query Frame = 0
Query:  474 MASHFGGLMYVLRLTLSLPTKSSG--------GGSGQEGHSVPPDVVRRGLQVLEGAHREAGGLFRFPPFASRWLEPILTDALRGLTEGAHPLLQEEVRHLVFGMAEIDHASFVTQFLPHFLATHYSWLGETHKEALLSPWRAGTHLDAPTFSSFLEDFVSDLGFFRAQAEAA 638
            MA+HF GLM V RL LSLPT  +         GGSG  GHSVPPD+VRRGL VLE +HR  GGLFRFPPFA+ WL+P+LTDALRGL EGAHPL QEEV  LVF +AE+DH +F T+FLPHFL THYSWLG   KEALL+PWRAGTHLD PTFSSFLE  VSDL FFRAQA AA
Sbjct:    1 MATHFSGLMTVFRLLLSLPTPPASSPLPGDTTGGSGGGGHSVPPDLVRRGLSVLEASHR-TGGLFRFPPFAATWLQPLLTDALRGLAEGAHPLTQEEVHRLVFDLAEVDHRAFATEFLPHFLGTHYSWLGAEQKEALLAPWRAGTHLDVPTFSSFLEALVSDLSFFRAQANAA 172          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1005.19.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJI2_9PHAE5.210e-25365.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYJ7_ECTSI6.200e-8869.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FYJ8_ECTSI1.050e-7571.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 447..464
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 447..468
IPR040016Exportin-6PANTHERPTHR21452EXPORTIN-6coord: 58..319
coord: 509..633

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1005contigA-nodosum_M_contig1005:136393..143248 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1005.19.1mRNA_A-nodosum_M_contig1005.19.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1005 136369..143569 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1005.19.1 ID=prot_A-nodosum_M_contig1005.19.1|Name=mRNA_A-nodosum_M_contig1005.19.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=639bp
MPATAAAAGGGTASHGDSGGGGSKEDSGGGDLILRAGEAMVRAARAMAEA
GLRERGPEFAALEAAALGAVAALLPGLATSGDGSNATGIAEAVVSLVRHC
WEGGTGVAGREVVALAAGRLLLSSTSVLPPHALEASAAVNALLKEASQVS
QSLPVGARVLLYESLSAFLLPPKLLEGDMRRVNDLDGRSRAYSEMLAPVL
VAFSAAHAGWQNWTGPSPWPGFSDAGVSGALCASCRIISRLCRSFTSTPS
KARRVLYQALEPALRPIVALASPLLENASGNSKEAASAARALLKMQVSVV
ETLGQEAGPSFASEAVGSLAAASPHGGVGGGSGGRLGGAGPAWLSSAVFR
LLTSVVRTRNASTKALVPQACGLALGRLHALGRLTGGQRVASEGWGDGWL
EGPVVETLPEFLDLSKELLVTQWHCFVPSAASRGMATSLASAIAARSQRQ
DAAGSPNDGRGENLSGTGFASEEMASHFGGLMYVLRLTLSLPTKSSGGGS
GQEGHSVPPDVVRRGLQVLEGAHREAGGLFRFPPFASRWLEPILTDALRG
LTEGAHPLLQEEVRHLVFGMAEIDHASFVTQFLPHFLATHYSWLGETHKE
ALLSPWRAGTHLDAPTFSSFLEDFVSDLGFFRAQAEAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040016XPO6