prot_A-nodosum_M_contig1.143.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1.143.1
Unique Nameprot_A-nodosum_M_contig1.143.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length153
Homology
BLAST of mRNA_A-nodosum_M_contig1.143.1 vs. uniprot
Match: A0A6H5L258_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L258_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.310e-25
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 0
Query:    1 MGFMPAKAESVVVLLCRVCVEGAPGLKDMGWDLSEWMTLVQDRRFLGWLVKEPTEQQKFV 60
            MGF+PAKA+SVVVLLCRVCVEGAPGLKDMGWDLSEW+ LVQDRRFL WLVK P+EQQ+  
Sbjct:  213 MGFVPAKADSVVVLLCRVCVEGAPGLKDMGWDLSEWLPLVQDRRFLPWLVKVPSEQQQIA 272          
BLAST of mRNA_A-nodosum_M_contig1.143.1 vs. uniprot
Match: D7FN00_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN00_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.320e-25
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 0
Query:    1 MGFMPAKAESVVVLLCRVCVEGAPGLKDMGWDLSEWMTLVQDRRFLGWLVKEPTEQQKFVGR 62
            MGF+PAKA+SVVVLLCRVCVEGAPGLKDMGWDLSEW+ LVQDRRFL WLVK P+EQQ+   R
Sbjct:  226 MGFVPAKADSVVVLLCRVCVEGAPGLKDMGWDLSEWLPLVQDRRFLPWLVKVPSEQQQSRAR 287          
BLAST of mRNA_A-nodosum_M_contig1.143.1 vs. uniprot
Match: A0A7S2RDC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RDC6_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.940e-20
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0
Query:    1 MGFMPAKAESVVVLLCRVCVEGAPGLKDMGWDLSEWMTLVQDRRFLGWLVKEPTEQQKFVGR 62
            +GF+PAKA+SVVV+LCRVCVE    LK+MGWDL EW+ L+ DRR L WLVK PTEQQ+   R
Sbjct:  234 LGFVPAKADSVVVVLCRVCVESVGSLKEMGWDLKEWLPLISDRRLLSWLVKVPTEQQQLRAR 295          
BLAST of mRNA_A-nodosum_M_contig1.143.1 vs. uniprot
Match: F0Y1L0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1L0_AURAN)

HSP 1 Score: 89.7 bits (221), Expect = 6.020e-18
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 0
Query:    2 GFMPAKAESVVVLLCRVCVEGAPGLKDMGWDLSEWMTLVQDRRFLGWLVKEPTEQQKFVGR 62
            GF+PAK ESVVVLLCRVCVE  P LK M WDL EW+ L+ DRRFL WLV+EP E  +   R
Sbjct:  121 GFVPAKTESVVVLLCRVCVETVPALKSMDWDLDEWLPLIADRRFLPWLVREPEEDAQRRAR 181          
BLAST of mRNA_A-nodosum_M_contig1.143.1 vs. uniprot
Match: A0A7S4I9J9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I9J9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.840e-17
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 0
Query:    1 MGFMPAKAESVVVLLCRVCVEGAPGLKDMGWDLSEWMTLVQDRRFLGWLVKEPTEQQKFVGR 62
            +GF+PA + SVVVLLCRVCVE  P LKDM W+LS+W  LVQDR+FL WLVK P ++Q    R
Sbjct:  173 LGFVPASSSSVVVLLCRVCVETVPALKDMEWELSQWHPLVQDRKFLPWLVKVPADKQLLRAR 234          
BLAST of mRNA_A-nodosum_M_contig1.143.1 vs. uniprot
Match: A0A8J2WS10_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WS10_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.850e-17
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0
Query:    2 GFMPAKAESVVVLLCRVCVEGAPGLKDMGWDLSEWMTLVQDRRFLGWLVKEPTEQ 56
            GF+PAKA+SVVVLLCR CVEG P LK M W L EW+ L+ DRRFL WLV+EP E+
Sbjct:  110 GFVPAKADSVVVLLCRGCVEGVPSLKSMDWALDEWLPLIADRRFLPWLVREPEER 164          
BLAST of mRNA_A-nodosum_M_contig1.143.1 vs. uniprot
Match: A0A7S1Y141_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y141_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 9.640e-17
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 0
Query:    1 MGFMPAKAESVVVLLCRVCVEGAPGLKDMGWDLSEWMTLVQDRRFLGWLVKEPTEQ 56
            MGF+PA + SVVVLLCRVCVE  P LK+M W+LS+W  L+QDRRFL WL+K P+++
Sbjct:   38 MGFVPASSSSVVVLLCRVCVETVPALKEMDWELSQWTPLIQDRRFLTWLIKVPSDK 93          
BLAST of mRNA_A-nodosum_M_contig1.143.1 vs. uniprot
Match: A0A7S1ZCC0_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZCC0_TRICV)

HSP 1 Score: 85.9 bits (211), Expect = 1.010e-16
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 0
Query:    1 MGFMPAKAESVVVLLCRVCVEGAPGLKDMGWDLSEWMTLVQDRRFLGWLVKEPTEQQKFVGR 62
            +GF+PA + SVVVLLCRVCVE  P LKDM W+L +W  LVQDR+FL WL+K P ++Q    R
Sbjct:  271 LGFVPASSSSVVVLLCRVCVETVPALKDMDWELGQWHPLVQDRKFLPWLIKVPEDKQLLRAR 332          
BLAST of mRNA_A-nodosum_M_contig1.143.1 vs. uniprot
Match: A0A7S1FMD2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMD2_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.320e-16
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0
Query:    1 MGFMPAKAESVVVLLCRVCVEGAPGLKDMGWDLSEWMTLVQDRRFLGWLVK 51
            +GF+PAKA+SVVVLLCRVCVE  P LKDM W+L+EW  L+QDR+FL WLVK
Sbjct:  193 LGFVPAKADSVVVLLCRVCVETVPALKDMDWELAEWHPLIQDRKFLPWLVK 243          
BLAST of mRNA_A-nodosum_M_contig1.143.1 vs. uniprot
Match: A0A2P6MZ86_9EUKA (Putative nonsense-mediated mRNA decay protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MZ86_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 1.350e-16
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 0
Query:    1 MGFMPAKAESVVVLLCRVCVEGAPGLKDMGWDLSEWMTLVQDRRFLGWLVKEPTEQQKFVGR 62
            +GF+PAK ESVVVLLCR     A GLKDM WDLS+W+ L++DR FL WLVK PTEQ++   R
Sbjct:  343 LGFIPAKTESVVVLLCRDPCANASGLKDMNWDLSQWLPLIEDRCFLPWLVKIPTEQEQLRAR 404          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1.143.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L258_9PHAE1.310e-2583.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN00_ECTSI1.320e-2582.26RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A7S2RDC6_9STRA4.940e-2066.13Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
F0Y1L0_AURAN6.020e-1865.57Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4I9J9_9STRA2.840e-1762.90Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A8J2WS10_9STRA3.850e-1769.09Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1Y141_9STRA9.640e-1764.29Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1ZCC0_TRICV1.010e-1659.68Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1FMD2_9STRA1.320e-1672.55Hypothetical protein (Fragment) n=2 Tax=Corethron ... [more]
A0A2P6MZ86_9EUKA1.350e-1662.90Putative nonsense-mediated mRNA decay protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018999RNA helicase UPF1, Cys/His rich zinc-binding domainPFAMPF09416UPF1_Zn_bindcoord: 1..60
e-value: 7.9E-17
score: 61.6
IPR045055DNA2/NAM7-like helicasePANTHERPTHR10887DNA2/NAM7 HELICASE FAMILYcoord: 4..62
NoneNo IPR availablePANTHERPTHR10887:SF486REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEINcoord: 4..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1contigA-nodosum_M_contig1:1995657..1997710 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1.143.1mRNA_A-nodosum_M_contig1.143.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1 1987055..2001133 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1.143.1 ID=prot_A-nodosum_M_contig1.143.1|Name=mRNA_A-nodosum_M_contig1.143.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=153bp
MGFMPAKAESVVVLLCRVCVEGAPGLKDMGWDLSEWMTLVQDRRFLGWLV
KEPTEQQKFVGRTSRGHTGGRSHRISHPPFFCVSGEEHFVCTNRQARGAV
ELGARGCPRRPGEAGRRRRGTGACVRRVQIVCLPKAMHAVLPRPHPLMNS
VY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018999UPF1_CH/ZBD
IPR045055DNA2/NAM7-like