mRNA_A-nodosum_M_contig996.27.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig996.27.1
Unique NamemRNA_A-nodosum_M_contig996.27.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig996.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig996contigA-nodosum_M_contig996:179225..179854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEW9
PFAMsUCH
Model size198
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000359
EggNOG OGsKOG1887@1|root,KOG1887@2759|Eukaryota
Descriptionprotein deubiquitination
Cds size195
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870540.6815777-CDS-A-nodosum_M_contig996:179224..1792691680870540.6815777-CDS-A-nodosum_M_contig996:179224..179269Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig996 179225..179269 +
1680870540.7029862-CDS-A-nodosum_M_contig996:179702..1798521680870540.7029862-CDS-A-nodosum_M_contig996:179702..179852Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig996 179703..179852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig996.27.1prot_A-nodosum_M_contig996.27.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig996 179225..179852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig996.27.1

>prot_A-nodosum_M_contig996.27.1 ID=prot_A-nodosum_M_contig996.27.1|Name=mRNA_A-nodosum_M_contig996.27.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=65bp
QQQQHGGGAWGKKPRAWGAAVVDVGNDNAPEEFSHRVESALRALFRALSG
GGRGDGRKGEGAGIT
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mRNA from alignment at A-nodosum_M_contig996:179225..179854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig996.27.1 ID=mRNA_A-nodosum_M_contig996.27.1|Name=mRNA_A-nodosum_M_contig996.27.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=630bp|location=Sequence derived from alignment at A-nodosum_M_contig996:179225..179854+ (Ascophyllum nodosum dioecious)
CAGCAACAGCAGCACGGCGGGGGGGCATGGGGAAAGAAGCCACGGGTACG
CTTCAAGCCTTGTTTTTCTCGATAGTGTAGCTACGTGTACCCGCGAGCTC
GCATGCCGTGCGGTGCAGTTGCACAAGAGCAGAAGCTTTTCTATCATCCC
GTCCCTCCTACTTCTCCCCCACCAACTTGCCTGTTGAAGGGTGGTCTCAT
GTTATGGTCCGCCTGATGTATAATCCGTTATCGCGCACGAATATTTGTCG
TTCCGGTGCTAGCTTCGCCCTGTACATTGCCTGTAGTCGGCACGATAGAA
CGATTGACCATTCTCACAAGCAAGCCAGAGGGTCGCTCTTGCAACGACAT
TGAATATTGAAAGATCTGCTGTCGTTCGTGCTTGCCCGGGCCTACATGCG
AACACACGAAGAAGACTGAACGTTGGTATCCGTCCGTTTGTGACCGCGCT
TCCGCCTGCCTTCGTCGGATGTCGGCAGGCGTGGGGAGCTGCAGTGGTCG
ACGTCGGCAACGACAACGCCCCGGAGGAGTTCAGCCACCGCGTTGAATCC
GCGCTCCGCGCACTTTTCCGCGCACTTTCAGGAGGGGGCCGCGGCGACGG
AAGGAAGGGGGAGGGGGCTGGTATTACCGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig996:179225..179854+

>mRNA_A-nodosum_M_contig996.27.1 ID=mRNA_A-nodosum_M_contig996.27.1|Name=mRNA_A-nodosum_M_contig996.27.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=195bp|location=Sequence derived from alignment at A-nodosum_M_contig996:179225..179854+ (Ascophyllum nodosum dioecious)
CAGCAACAGCAGCACGGCGGGGGGGCATGGGGAAAGAAGCCACGGGCGTG
GGGAGCTGCAGTGGTCGACGTCGGCAACGACAACGCCCCGGAGGAGTTCA
GCCACCGCGTTGAATCCGCGCTCCGCGCACTTTTCCGCGCACTTTCAGGA
GGGGGCCGCGGCGACGGAAGGAAGGGGGAGGGGGCTGGTATTACC
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