mRNA_A-nodosum_M_contig996.25.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig996.25.1
Unique NamemRNA_A-nodosum_M_contig996.25.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig996.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig996contigA-nodosum_M_contig996:177842..178577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size515
Hectar predicted targeting categoryother localisation
Exons2
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870537.967816-CDS-A-nodosum_M_contig996:177841..1780241680870537.967816-CDS-A-nodosum_M_contig996:177841..178024Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig996 177842..178024 +
1680870537.9813342-CDS-A-nodosum_M_contig996:178247..1785771680870537.9813342-CDS-A-nodosum_M_contig996:178247..178577Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig996 178248..178577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig996.25.1prot_A-nodosum_M_contig996.25.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig996 177842..178577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig996.25.1

>prot_A-nodosum_M_contig996.25.1 ID=prot_A-nodosum_M_contig996.25.1|Name=mRNA_A-nodosum_M_contig996.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=171bp
MPWVPDGGQQHYVHHLTPQQEDWGSPTQGIGYAPPPPPTLSLQLQQQQQP
PLHLAHGVGGVMVSANDDDSVGERTPSLNGYGQGHDEGQTSGDHQTESVS
SPPYEIEGCTSLELDAVATRAQEGLCEARTSEGEVASPSQSSETMTPAAE
LANGAVSLFSSAAVDSSITTG
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mRNA from alignment at A-nodosum_M_contig996:177842..178577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig996.25.1 ID=mRNA_A-nodosum_M_contig996.25.1|Name=mRNA_A-nodosum_M_contig996.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=736bp|location=Sequence derived from alignment at A-nodosum_M_contig996:177842..178577+ (Ascophyllum nodosum dioecious)
ATGCCGTGGGTGCCCGATGGGGGGCAGCAGCACTACGTGCACCACCTTAC
CCCTCAGCAGGAAGACTGGGGCTCGCCAACTCAAGGTATAGGTTACGCGC
CGCCCCCACCCCCTACCCTCTCGCTGCAGCTGCAACAACAGCAGCAGCCT
CCGCTGCACTTGGCACATGGAGTTGGGGGTGTGAAGCCTCGGTAGGTGAA
TGATGAATGATGATGATTCACCGGCGGCATGCCCAAACAAATGCCGTGGG
TGCCCGATGGGGGGCAGCAGCACTACGTGCACCACCTTACCCCTCAGCAG
GAAGACTGGGGTTCGCCAACCCAAGGTATAGGTTACGCGCCGCCCCCACC
CCCTACCCTCTCGCTGCAGCTGCAACAACAGCAGCAGCCTCCGCTGCACT
TGGCACATGGTGTCGGCGAATGATGATGACTCGGTAGGTGAAAGGACGCC
AAGTCTCAACGGTTACGGGCAGGGGCATGACGAAGGGCAGACGTCGGGAG
ACCATCAGACGGAGTCGGTGTCGTCGCCACCCTACGAAATAGAAGGATGC
ACGTCGTTGGAGTTAGACGCCGTTGCAACGCGCGCGCAAGAAGGCCTCTG
CGAGGCTCGAACGTCCGAGGGGGAGGTAGCTTCGCCCTCGCAATCCTCTG
AAACCATGACACCCGCTGCAGAACTAGCGAACGGCGCGGTATCGTTGTTT
TCGTCCGCTGCCGTCGATTCCTCGATCACAACTGGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig996:177842..178577+

>mRNA_A-nodosum_M_contig996.25.1 ID=mRNA_A-nodosum_M_contig996.25.1|Name=mRNA_A-nodosum_M_contig996.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=513bp|location=Sequence derived from alignment at A-nodosum_M_contig996:177842..178577+ (Ascophyllum nodosum dioecious)
ATGCCGTGGGTGCCCGATGGGGGGCAGCAGCACTACGTGCACCACCTTAC
CCCTCAGCAGGAAGACTGGGGCTCGCCAACTCAAGGTATAGGTTACGCGC
CGCCCCCACCCCCTACCCTCTCGCTGCAGCTGCAACAACAGCAGCAGCCT
CCGCTGCACTTGGCACATGGAGTTGGGGGTGTGATGGTGTCGGCGAATGA
TGATGACTCGGTAGGTGAAAGGACGCCAAGTCTCAACGGTTACGGGCAGG
GGCATGACGAAGGGCAGACGTCGGGAGACCATCAGACGGAGTCGGTGTCG
TCGCCACCCTACGAAATAGAAGGATGCACGTCGTTGGAGTTAGACGCCGT
TGCAACGCGCGCGCAAGAAGGCCTCTGCGAGGCTCGAACGTCCGAGGGGG
AGGTAGCTTCGCCCTCGCAATCCTCTGAAACCATGACACCCGCTGCAGAA
CTAGCGAACGGCGCGGTATCGTTGTTTTCGTCCGCTGCCGTCGATTCCTC
GATCACAACTGGT
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