mRNA_A-nodosum_M_contig995.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig995.7.1
Unique NamemRNA_A-nodosum_M_contig995.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig995.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig995contigA-nodosum_M_contig995:29268..29721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size454
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870535.936011-UTR-A-nodosum_M_contig995:29267..293641680870535.936011-UTR-A-nodosum_M_contig995:29267..29364Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig995 29268..29364 -
1680870535.9607415-UTR-A-nodosum_M_contig995:29670..297211680870535.9607415-UTR-A-nodosum_M_contig995:29670..29721Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig995 29671..29721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870535.950316-CDS-A-nodosum_M_contig995:29364..296701680870535.950316-CDS-A-nodosum_M_contig995:29364..29670Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig995 29365..29670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig995.7.1prot_A-nodosum_M_contig995.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig995 29365..29670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig995.7.1

>prot_A-nodosum_M_contig995.7.1 ID=prot_A-nodosum_M_contig995.7.1|Name=mRNA_A-nodosum_M_contig995.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=102bp
MGVASQNSTLMRPKEVSHHRVVSWNLSHLNQVSLRTSCFDQLIRELLTCH
CLDGSSVHFLQSYFSVCAETFFLAYPVFSAKQFLFLGQAVHRSCCSKARF
C*
back to top

mRNA from alignment at A-nodosum_M_contig995:29268..29721-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig995.7.1 ID=mRNA_A-nodosum_M_contig995.7.1|Name=mRNA_A-nodosum_M_contig995.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=454bp|location=Sequence derived from alignment at A-nodosum_M_contig995:29268..29721- (Ascophyllum nodosum dioecious)
CGGTCCGTCTCGCATCCGTACAAGGATTCCTACGACTCGTCAGCTAGGCC
AATGGGTGTCGCTTCGCAAAACTCTACGCTGATGAGACCGAAGGAGGTAT
CCCATCACCGGGTTGTCAGTTGGAACCTGAGTCACTTGAATCAGGTGTCT
TTACGGACTTCTTGTTTCGATCAGTTGATACGGGAACTTCTGACCTGTCA
CTGTCTCGACGGCTCCTCTGTGCATTTCCTGCAGAGTTACTTTTCGGTTT
GTGCTGAAACTTTCTTTTTAGCCTACCCTGTATTCTCCGCCAAACAGTTT
CTTTTTCTGGGTCAGGCAGTTCACCGATCTTGCTGTTCAAAAGCCCGCTT
TTGTTAAGGAACGGCTTGGGGCAGGTTCTCATGTTATGTCCATCCTCGGA
CAAACAGTTTAGGCATTGTCCAACGAATTTTTTGAAAGTAGCAGATCTGA
CTTT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig995:29268..29721-

>mRNA_A-nodosum_M_contig995.7.1 ID=mRNA_A-nodosum_M_contig995.7.1|Name=mRNA_A-nodosum_M_contig995.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at A-nodosum_M_contig995:29268..29721- (Ascophyllum nodosum dioecious)
ATGGGTGTCGCTTCGCAAAACTCTACGCTGATGAGACCGAAGGAGGTATC
CCATCACCGGGTTGTCAGTTGGAACCTGAGTCACTTGAATCAGGTGTCTT
TACGGACTTCTTGTTTCGATCAGTTGATACGGGAACTTCTGACCTGTCAC
TGTCTCGACGGCTCCTCTGTGCATTTCCTGCAGAGTTACTTTTCGGTTTG
TGCTGAAACTTTCTTTTTAGCCTACCCTGTATTCTCCGCCAAACAGTTTC
TTTTTCTGGGTCAGGCAGTTCACCGATCTTGCTGTTCAAAAGCCCGCTTT
TGTTAA
back to top