mRNA_A-nodosum_M_contig9948.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9948.5.1
Unique NamemRNA_A-nodosum_M_contig9948.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9948.5.1 vs. uniprot
Match: A0A090F1V7_MESPL (Uncharacterized protein n=2 Tax=Mesorhizobium TaxID=68287 RepID=A0A090F1V7_MESPL)

HSP 1 Score: 51.2 bits (121), Expect = 2.120e-7
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 RATNDALVDVAIIGAGPAGLALAVGLKEKGVRVKVFEAAPEISER 135
            R+ N   +DVAIIGAGPAGL  A  L+E G+RVKVFEA P +  R
Sbjct:    4 RSRNQPDLDVAIIGAGPAGLRTAYHLRESGLRVKVFEALPHVGGR 48
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BLAST of mRNA_A-nodosum_M_contig9948.5.1 vs. uniprot
Match: UPI00042072AD (FAD-dependent monooxygenase n=1 Tax=Azorhizobium doebereinerae TaxID=281091 RepID=UPI00042072AD)

HSP 1 Score: 48.1 bits (113), Expect = 3.920e-5
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   19 LVDVAIIGAGPAGLALAVGLKEKGVRVKVFEAAPEI 126
            ++D+AIIGAGP GLA A+ L +KG R K++EAAPE+
Sbjct:    1 MLDIAIIGAGPGGLATALRLHQKGFRPKIYEAAPEL 36
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BLAST of mRNA_A-nodosum_M_contig9948.5.1 vs. uniprot
Match: UPI0018CB1159 (flavin-dependent oxidoreductase n=1 Tax=Brevundimonas sp. BAL450 TaxID=1708162 RepID=UPI0018CB1159)

HSP 1 Score: 47.8 bits (112), Expect = 5.360e-5
Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   22 VDVAIIGAGPAGLALAVGLKEKGVRVKVFEAAPEISE 132
            +D+AIIG G  GLALA+GL ++GVR +V+EAAP++ E
Sbjct:    1 MDIAIIGGGIVGLALALGLHKRGVRARVYEAAPQVRE 37
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BLAST of mRNA_A-nodosum_M_contig9948.5.1 vs. uniprot
Match: A0A345P563_9GAMM (Alkyl hydroperoxide reductase subunit F n=1 Tax=Aquirhabdus parva TaxID=2283318 RepID=A0A345P563_9GAMM)

HSP 1 Score: 47.8 bits (112), Expect = 5.370e-5
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 RATNDALVDVAIIGAGPAGLALAVGLKEKGVRVKVFEAAP 120
            + TND ++DV IIGAGPAG ALA+ L+ +G+ +++ + AP
Sbjct:    3 KKTNDKIIDVLIIGAGPAGTALAIDLQRRGLNIRIVDKAP 42
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BLAST of mRNA_A-nodosum_M_contig9948.5.1 vs. uniprot
Match: UPI00049829EA (FAD-dependent monooxygenase n=1 Tax=Rhizorhabdus wittichii TaxID=160791 RepID=UPI00049829EA)

HSP 1 Score: 47.4 bits (111), Expect = 7.310e-5
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   25 DVAIIGAGPAGLALAVGLKEKGVRVKVFEAAPEISE 132
            D+AIIG G  GLALA+GL  +GVR  V+EAAPE+ E
Sbjct:    6 DIAIIGGGIVGLALAIGLHRRGVRATVYEAAPELRE 41
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BLAST of mRNA_A-nodosum_M_contig9948.5.1 vs. uniprot
Match: UPI001F1FFDEA (FAD-dependent monooxygenase n=1 Tax=Microbacterium chengjingii TaxID=2769067 RepID=UPI001F1FFDEA)

HSP 1 Score: 47.4 bits (111), Expect = 7.340e-5
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   10 NDALVDVAIIGAGPAGLALAVGLKEKGVRVKVFEAAPEI 126
             + ++D+AIIGAGPAGLA A+ L +KG R +++EA PE+
Sbjct:   16 KNTMLDIAIIGAGPAGLAAALRLHQKGFRPRIYEAVPEL 54
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9948.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A090F1V7_MESPL2.120e-760.00Uncharacterized protein n=2 Tax=Mesorhizobium TaxI... [more]
UPI00042072AD3.920e-561.11FAD-dependent monooxygenase n=1 Tax=Azorhizobium d... [more]
UPI0018CB11595.360e-559.46flavin-dependent oxidoreductase n=1 Tax=Brevundimo... [more]
A0A345P563_9GAMM5.370e-550.00Alkyl hydroperoxide reductase subunit F n=1 Tax=Aq... [more]
UPI00049829EA7.310e-563.89FAD-dependent monooxygenase n=1 Tax=Rhizorhabdus w... [more]
UPI001F1FFDEA7.340e-553.85FAD-dependent monooxygenase n=1 Tax=Microbacterium... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9948contigA-nodosum_M_contig9948:13607..13741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1038858.AXBA01000021_gene4777
Preferred nameMA20_38140
PFAMsFAD_binding_3
Model size135
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K20940
KEGG Pathwayko00405,ko01130,map00405,map01130
KEGG ModuleM00835
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.43e-06
EggNOG OGsCOG0654@1|root,COG0654@2|Bacteria,1MXEW@1224|Proteobacteria,2TRRC@28211|Alphaproteobacteria
EC1.14.13.218
DescriptionCOG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Cds size135
COG categoryCH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870535.7349687-CDS-A-nodosum_M_contig9948:13606..137411680870535.7349687-CDS-A-nodosum_M_contig9948:13606..13741Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9948 13607..13741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9948.5.1prot_A-nodosum_M_contig9948.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9948 13607..13741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9948.5.1

>prot_A-nodosum_M_contig9948.5.1 ID=prot_A-nodosum_M_contig9948.5.1|Name=mRNA_A-nodosum_M_contig9948.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=45bp
RATNDALVDVAIIGAGPAGLALAVGLKEKGVRVKVFEAAPEISER
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mRNA from alignment at A-nodosum_M_contig9948:13607..13741-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9948.5.1 ID=mRNA_A-nodosum_M_contig9948.5.1|Name=mRNA_A-nodosum_M_contig9948.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at A-nodosum_M_contig9948:13607..13741- (Ascophyllum nodosum dioecious)
AGAGCCACGAATGACGCCTTGGTCGATGTTGCAATCATTGGAGCTGGTCC
CGCTGGTCTGGCTCTGGCGGTGGGACTGAAGGAAAAAGGGGTTCGCGTCA
AAGTTTTCGAAGCAGCGCCTGAAATCAGCGAGAGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9948:13607..13741-

>mRNA_A-nodosum_M_contig9948.5.1 ID=mRNA_A-nodosum_M_contig9948.5.1|Name=mRNA_A-nodosum_M_contig9948.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=135bp|location=Sequence derived from alignment at A-nodosum_M_contig9948:13607..13741- (Ascophyllum nodosum dioecious)
AGAGCCACGAATGACGCCTTGGTCGATGTTGCAATCATTGGAGCTGGTCC
CGCTGGTCTGGCTCTGGCGGTGGGACTGAAGGAAAAAGGGGTTCGCGTCA
AAGTTTTCGAAGCAGCGCCTGAAATCAGCGAGAGA
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